Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0002111.1

Orthogroup ID

OG0009176

Physical Location & Seq

Genomic Coordinates Forward (+)

54183 .. 57724

Gene Structure 3542 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0002111.1_g000015.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1365 bp

atggtctcctgccaacccaatggcatttgcgtaatatttcacaaacaaaactgcatagctgaaaaaaaagaaggaacttttaaagaaccaaattctgcaaagattataatcatgtccctaagtatcaagtggcatgaacaactacatggctttacttcattcccatcccctgctactccaattttcaataccaggaagaaagctgacgtgataagagtattagctaaagcagccaacttgggttctgaatcaaatgcaaagaaagcaaatttgtgtgctgcaaagaaggaaagaattaagctgccaagttttgatggtaacttagggcgcaagaatttgcacattagagagtttctaagccacccatcaggaactgaagccatgctcaatactagagcactggaaaattttgaaccccttagcactgatacttacaggtgcactttgccaaagcttaaacttttgacttttgaagcagcccctgtggtggatttaagagtgaacccaaccaatgaggattgtatggttgagatgctctcttgcaagtttgagggttcagaatctgtggaacgccaaaacagccgtttttcagcattgatgacaaatcacatgtcgtgggggacagacaactctgaatcatttttggaagttgatgtgaagttaaatctcaccctcgagatctatacgctcccttttaccatgatgccggtatcagctgttgagcgtccgggaaacttcaactcctacaagattatgacaaatgggttcataagcattcagaagatgattttccatgaaatggtccatttctgcattgttaagatggcctttggtaaaaccaaaaaagacagccgtggcattactctagccaatttatctctgattcccattgcttcacgtgttggttttctttgctatgaagtttgctttgtgatccatcaaaaaaataaaaattttcagctacaaaaaggagtgttattacttcttatctccaagaacaatagcagtggttccacctatctcctcagacgcggcagcagcttccagagtcctccgagccttggcgaccttctcaccaatctcaccctccgtgaatccctgattgctcagattctcctccagcaccacaagcttgagctcaatctggcgcttgcaatcatactcaaggatgtctctgttgccttctttgtgacgccagccatgccccggtctccctcaaaccctctggagttttcagcaaccttgccagtcttggacctgatgaagaacttgttcgtctggatattgccattggttccagaccctctcggagtctgtaaccctattccgttgacatatcttgctactctttgctcaatcacctaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF1997

Protein Analysis

454

Amino Acids

50.67

Weight (kDa)

9.1

Isoelectric Point (pI)

38.62

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009176)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G31115 AT4G31115
fragaria_vesca	FvH4_4g12330
malus_domestica	MD08G1133200.v1.1
prunus_persica	Prupe.1G463100_v2.0.a1 Prupe.1G463100_v2.0.a1 Prupe.1G463100_v2.0.a1 Prupe.1G463100_v2.0.a1
pyrus_communis	pycom08g11210
rosa_chinensis	RchiOBHm_Chr4g0410411
rosa_laevigata	RLG00000008431
rosa_multiflora	Rmu_co8379347.1_g000001 Rmu_sc0002111.1_g000015
rosa_roxburghii	Rroxscaffold_5G00355220
rosa_rugosa	Rorug04G0102400 Rorug04G0102500 Rorug04G0102600
rosa_samantha	Rh4AG160500 Rh4BG159700 Rh4CG172600 Rh4DG155400
rosa_wichuraiana	Rw4G013380

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	107
AccB7I	CCANNNNNTGG	1 cut(s)	799
AccII	CGCG	1 cut(s)	1032
AciI	CCGC	1 cut(s)	1032
AclWI	GGATC	1 cut(s)	928
AcsI	RAATTY	5 cut(s)	91, 268, 334, 406, 952
AcuI	CTGAAG	1 cut(s)	396
AcvI	CACGTG	1 cut(s)	899
AcyI	GRCGYC	1 cut(s)	1193
AfiI	CCNNNNNNNGG	4 cut(s)	487, 799, 1061, 1206
AflIII	ACRYGT	2 cut(s)	609, 898
AgsI	TTSAA	4 cut(s)	187, 413, 473, 739
AjiI	CACGTC	1 cut(s)	208
AjnI	CCWGG	1 cut(s)	191
Alw21I	GWGCWC	3 cut(s)	400, 443, 1140
Alw26I	GTCTC	3 cut(s)	10, 1177, 1215
Alw44I	GTGCAC	1 cut(s)	439
AlwI	GGATC	1 cut(s)	928
AlwNI	CAGNNNCTG	3 cut(s)	374, 482, 563
Ama87I	CYCGRG	1 cut(s)	674
AoxI	GGCC	1 cut(s)	825
ApaLI	GTGCAC	1 cut(s)	439
ApeKI	GCWGC	6 cut(s)	230, 278, 301, 476, 1035, 1038
ApoI	RAATTY	5 cut(s)	91, 268, 334, 406, 952
ArsI	GACNNNNNNTTYG	2 cut(s)	596, 628
Asp700I	GAANNNNTTC	1 cut(s)	1271
AspLEI	GCGC	2 cut(s)	330, 1150
AspS9I	GGNCC	2 cut(s)	802, 1255
AsuC2I	CCSGG	2 cut(s)	729, 1207
AsuHPI	GGTGA	4 cut(s)	661, 1066, 1075, 1351
AvaI	CYCGRG	1 cut(s)	674
AvaII	GGWCC	2 cut(s)	802, 1255
BaeGI	GKGCMC	1 cut(s)	443
BanII	GRGCYC	1 cut(s)	1140
BbrPI	CACGTG	1 cut(s)	899
Bbv12I	GWGCWC	3 cut(s)	400, 443, 1140
BbvI	GCAGC	6 cut(s)	242, 265, 288, 488, 1047, 1050
BccI	CCATC	5 cut(s)	172, 308, 373, 817, 945
BceAI	ACGGC	2 cut(s)	567, 837
BciT130I	CCWGG	1 cut(s)	193
BcnI	CCSGG	2 cut(s)	729, 1207
BcoDI	GTCTC	3 cut(s)	10, 1177, 1215
BfaI	CTAG	2 cut(s)	393, 866
BfoI	RGCGCY	1 cut(s)	1151
BglII	AGATCT	1 cut(s)	678
BisI	GCNGC	7 cut(s)	231, 279, 302, 477, 1033, 1036, 1039
BlsI	GCNGC	7 cut(s)	232, 280, 303, 478, 1034, 1037, 1040
Bme1390I	CCNGG	3 cut(s)	193, 729, 1207
Bme18I	GGWCC	2 cut(s)	802, 1255
BmeT110I	CYCGRG	1 cut(s)	674
BmgBI	CACGTC	1 cut(s)	208
BmgT120I	GGNCC	2 cut(s)	802, 1255
BmiI	GGNNCC	2 cut(s)	1012, 1296
BmrFI	CCNGG	3 cut(s)	193, 729, 1207
BmsI	GCATC	2 cut(s)	522, 693
BplI	GAGNNNNNCTC	2 cut(s)	521, 553
BpmI	CTGGAG	2 cut(s)	1103, 1247
Bpu10I	CCTNAGC	1 cut(s)	419
BpuEI	CTTGAG	2 cut(s)	1148, 1154
BpuMI	CCSGG	2 cut(s)	729, 1207
BsaAI	YACGTR	1 cut(s)	899
BsaBI	GATNNNNATC	1 cut(s)	107
BsaHI	GRCGYC	1 cut(s)	1193
BsaI	GGTCTC	2 cut(s)	10, 1215
BsaJI	CCNNGG	3 cut(s)	853, 1060, 1205
BsaXI	ACNNNNNCTCC	2 cut(s)	725, 755
Bsc4I	CCNNNNNNNGG	4 cut(s)	487, 799, 1061, 1206
Bse118I	RCCGGY	1 cut(s)	706
Bse1I	ACTGG	2 cut(s)	405, 1247
Bse3DI	GCAATG	1 cut(s)	888
Bse8I	GATNNNNATC	1 cut(s)	107
BseBI	CCWGG	1 cut(s)	193
BseDI	CCNNGG	3 cut(s)	853, 1060, 1205
BseGI	GGATG	2 cut(s)	164, 1174
BseJI	GATNNNNATC	1 cut(s)	107
BseLI	CCNNNNNNNGG	4 cut(s)	487, 799, 1061, 1206
BseMI	GCAATG	1 cut(s)	888
BseMII	CTCAG	2 cut(s)	1039, 1121
BseNI	ACTGG	2 cut(s)	405, 1247
BseRI	GAGGAG	2 cut(s)	1013, 1106
BseSI	GKGCMC	1 cut(s)	443
BseXI	GCAGC	6 cut(s)	242, 265, 288, 488, 1047, 1050
Bsh1236I	CGCG	1 cut(s)	1032
BshFI	GGCC	1 cut(s)	827
BsiHKAI	GWGCWC	3 cut(s)	400, 443, 1140
BsiHKCI	CYCGRG	1 cut(s)	674
BsiSI	CCGG	3 cut(s)	707, 728, 1207
BslFI	GGGAC	2 cut(s)	100, 634
BslI	CCNNNNNNNGG	4 cut(s)	487, 799, 1061, 1206
BsmAI	GTCTC	3 cut(s)	10, 1177, 1215
BsmFI	GGGAC	2 cut(s)	100, 634
BsmI	GAATGC	1 cut(s)	774
BsnI	GGCC	1 cut(s)	827
Bso31I	GGTCTC	2 cut(s)	10, 1215
BsoBI	CYCGRG	1 cut(s)	674
Bsp1286I	GDGCHC	3 cut(s)	400, 443, 1140
Bsp143I	GATC	2 cut(s)	678, 933
BspACI	CCGC	1 cut(s)	1032
BspANI	GGCC	1 cut(s)	827
BspCNI	CTCAG	2 cut(s)	1038, 1120
BspFNI	CGCG	1 cut(s)	1032
BspLI	GGNNCC	2 cut(s)	1012, 1296
BspPI	GGATC	1 cut(s)	928
BspTNI	GGTCTC	2 cut(s)	10, 1215
BsrDI	GCAATG	1 cut(s)	888
BsrFI	RCCGGY	1 cut(s)	706
BsrI	ACTGG	2 cut(s)	405, 1247
BssAI	RCCGGY	1 cut(s)	706
BssECI	CCNNGG	3 cut(s)	853, 1060, 1205
BssMI	GATC	2 cut(s)	678, 933
BssNI	GRCGYC	1 cut(s)	1193
BssT1I	CCWWGG	1 cut(s)	1060
Bst2UI	CCWGG	1 cut(s)	193
BstACI	GRCGYC	1 cut(s)	1193
BstBAI	YACGTR	1 cut(s)	899
BstC8I	GCNNGC	2 cut(s)	1152, 1197
BstDEI	CTNAG	6 cut(s)	119, 322, 356, 419, 1025, 1107
BstDSI	CCRYGG	1 cut(s)	853
BstF5I	GGATG	2 cut(s)	164, 1174
BstFNI	CGCG	1 cut(s)	1032
BstH2I	RGCGCY	1 cut(s)	1151
BstHHI	GCGC	2 cut(s)	330, 1150
BstKTI	GATC	2 cut(s)	681, 936
BstMAI	GTCTC	3 cut(s)	10, 1177, 1215
BstMBI	GATC	2 cut(s)	678, 933
BstMWI	GCNNNNNNNGC	6 cut(s)	230, 263, 579, 1038, 1129, 1201
BstNI	CCWGG	1 cut(s)	193
BstNSI	RCATGY	1 cut(s)	613
BstSCI	CCNGG	3 cut(s)	191, 727, 1205
BstSLI	GKGCMC	1 cut(s)	443
BstUI	CGCG	1 cut(s)	1032
BstV1I	GCAGC	6 cut(s)	242, 265, 288, 488, 1047, 1050
BstX2I	RGATCY	1 cut(s)	678
BstXI	CCANNNNNNTGG	1 cut(s)	20
BstYI	RGATCY	1 cut(s)	678
BsuRI	GGCC	1 cut(s)	827
BtgI	CCRYGG	1 cut(s)	853
BtrI	CACGTC	1 cut(s)	208
BtsCI	GGATG	2 cut(s)	164, 1174
BtsI	GCAGTG	1 cut(s)	1012
BtsIMutI	CAGTG	3 cut(s)	398, 423, 1012
Cac8I	GCNNGC	2 cut(s)	1152, 1197
CaiI	CAGNNNCTG	3 cut(s)	374, 482, 563
CfoI	GCGC	2 cut(s)	330, 1150
Cfr10I	RCCGGY	1 cut(s)	706
Cfr13I	GGNCC	2 cut(s)	802, 1255
CseI	GACGC	3 cut(s)	713, 1038, 1201
CspCI	CAANNNNNGTGG	2 cut(s)	988, 1023
CviAII	CATG	8 cut(s)	112, 134, 146, 382, 610, 700, 794, 1201
DdeI	CTNAG	6 cut(s)	119, 322, 356, 419, 1025, 1107
DpnI	GATC	2 cut(s)	680, 935
DpnII	GATC	2 cut(s)	678, 933
DraI	TTTAAA	1 cut(s)	82
Ecl136II	GAGCTC	1 cut(s)	1138
Eco130I	CCWWGG	1 cut(s)	1060
Eco24I	GRGCYC	1 cut(s)	1140
Eco31I	GGTCTC	2 cut(s)	10, 1215
Eco47I	GGWCC	2 cut(s)	802, 1255
Eco53kI	GAGCTC	1 cut(s)	1138
Eco57I	CTGAAG	1 cut(s)	396
Eco72I	CACGTG	1 cut(s)	899
Eco88I	CYCGRG	1 cut(s)	674
EcoICRI	GAGCTC	1 cut(s)	1138
EcoRII	CCWGG	1 cut(s)	191
EcoT14I	CCWWGG	1 cut(s)	1060
EcoT38I	GRGCYC	1 cut(s)	1140
ErhI	CCWWGG	1 cut(s)	1060
FaeI	CATG	8 cut(s)	115, 137, 149, 385, 613, 703, 797, 1204
FalI	AAGNNNNNCTT	2 cut(s)	812, 844
FaqI	GGGAC	2 cut(s)	100, 634
FatI	CATG	8 cut(s)	111, 133, 145, 381, 609, 699, 793, 1200
Fnu4HI	GCNGC	7 cut(s)	231, 279, 302, 477, 1033, 1036, 1039
FokI	GGATG	2 cut(s)	151, 1181
FriOI	GRGCYC	1 cut(s)	1140
Fsp4HI	GCNGC	7 cut(s)	231, 279, 302, 477, 1033, 1036, 1039
FspBI	CTAG	2 cut(s)	393, 866
GlaI	GCGC	2 cut(s)	329, 1149
GluI	GCNGC	7 cut(s)	231, 279, 302, 477, 1033, 1036, 1039
GsuI	CTGGAG	2 cut(s)	1103, 1247
HaeII	RGCGCY	1 cut(s)	1151
HaeIII	GGCC	1 cut(s)	827
HapII	CCGG	3 cut(s)	707, 728, 1207
HgaI	GACGC	3 cut(s)	713, 1038, 1201
HhaI	GCGC	2 cut(s)	330, 1150
Hin1I	GRCGYC	1 cut(s)	1193
Hin1II	CATG	8 cut(s)	115, 137, 149, 385, 613, 703, 797, 1204
Hin6I	GCGC	2 cut(s)	328, 1148
HinP1I	GCGC	2 cut(s)	328, 1148
HincII	GTYRAC	1 cut(s)	1332
HindII	GTYRAC	1 cut(s)	1332
HindIII	AAGCTT	2 cut(s)	452, 1130
HinfI	GANTC	8 cut(s)	248, 560, 635, 883, 1048, 1094, 1111, 1311
HpaII	CCGG	3 cut(s)	707, 728, 1207
HphI	GGTGA	4 cut(s)	661, 1066, 1075, 1351
Hpy166II	GTNNAC	3 cut(s)	441, 502, 1332
Hpy188I	TCNGA	9 cut(s)	247, 559, 634, 780, 882, 1028, 1056, 1110, 1310
Hpy188III	TCNNGA	6 cut(s)	369, 676, 1045, 1226, 1279, 1298
Hpy8I	GTNNAC	3 cut(s)	441, 502, 1332
HpyAV	CCTTC	4 cut(s)	65, 280, 1079, 1192
HpyCH4IV	ACGT	2 cut(s)	207, 898
HpyCH4V	TGCA	9 cut(s)	54, 98, 257, 281, 340, 441, 543, 813, 1154
HpyF10VI	GCNNNNNNNGC	6 cut(s)	230, 263, 579, 1038, 1129, 1201
HpyF3I	CTNAG	6 cut(s)	119, 322, 356, 419, 1025, 1107
HpySE526I	ACGT	2 cut(s)	207, 898
Hsp92I	GRCGYC	1 cut(s)	1193
Hsp92II	CATG	8 cut(s)	115, 137, 149, 385, 613, 703, 797, 1204
HspAI	GCGC	2 cut(s)	328, 1148
Kzo9I	GATC	2 cut(s)	678, 933
LmnI	GCTCC	1 cut(s)	693
Lsp1109I	GCAGC	6 cut(s)	242, 265, 288, 488, 1047, 1050
LweI	GCATC	2 cut(s)	522, 693
MaeI	CTAG	2 cut(s)	393, 866
MaeII	ACGT	2 cut(s)	207, 898
MaeIII	GTNAC	3 cut(s)	317, 1189, 1316
MalI	GATC	2 cut(s)	680, 935
MboI	GATC	2 cut(s)	678, 933
MboII	GAAGA	3 cut(s)	208, 793, 1276
MflI	RGATCY	1 cut(s)	678
MhlI	GDGCHC	3 cut(s)	400, 443, 1140
MluCI	AATT	8 cut(s)	91, 180, 268, 294, 334, 406, 871, 952
MlyI	GAGTC	2 cut(s)	1057, 1320
MroXI	GAANNNNTTC	1 cut(s)	1271
MseI	TTAA	6 cut(s)	81, 297, 456, 494, 662, 819
MspA1I	CMGCKG	1 cut(s)	716
MspI	CCGG	3 cut(s)	707, 728, 1207
MspR9I	CCNGG	3 cut(s)	193, 729, 1207
Mva1269I	GAATGC	1 cut(s)	774
MvaI	CCWGG	1 cut(s)	193
MvnI	CGCG	1 cut(s)	1032
MwoI	GCNNNNNNNGC	6 cut(s)	230, 263, 579, 1038, 1129, 1201
NciI	CCSGG	2 cut(s)	729, 1207
NdeII	GATC	2 cut(s)	678, 933
NlaIII	CATG	8 cut(s)	115, 137, 149, 385, 613, 703, 797, 1204
NlaIV	GGNNCC	2 cut(s)	1012, 1296
NmuCI	GTSAC	1 cut(s)	1189
NspI	RCATGY	1 cut(s)	613
PaeR7I	CTCGAG	1 cut(s)	674
PciI	ACATGT	1 cut(s)	609
PctI	GAATGC	1 cut(s)	774
PdmI	GAANNNNTTC	1 cut(s)	1271
PfeI	GAWTC	6 cut(s)	248, 560, 635, 883, 1094, 1111
PflMI	CCANNNNNTGG	1 cut(s)	799
PfoI	TCCNGGA	1 cut(s)	727
PkrI	GCNGC	7 cut(s)	232, 280, 303, 478, 1034, 1037, 1040
PleI	GAGTC	2 cut(s)	1056, 1319
PmaCI	CACGTG	1 cut(s)	899
PmlI	CACGTG	1 cut(s)	899
PpsI	GAGTC	2 cut(s)	1056, 1319
Ppu21I	YACGTR	1 cut(s)	899
PscI	ACATGT	1 cut(s)	609
PsiI	TTATAA	1 cut(s)	107
Psp124BI	GAGCTC	1 cut(s)	1140
Psp6I	CCWGG	1 cut(s)	191
PspCI	CACGTG	1 cut(s)	899
PspGI	CCWGG	1 cut(s)	191
PspN4I	GGNNCC	2 cut(s)	1012, 1296
PspPI	GGNCC	2 cut(s)	802, 1255
PstNI	CAGNNNCTG	3 cut(s)	374, 482, 563
PsuI	RGATCY	1 cut(s)	678
PvuII	CAGCTG	1 cut(s)	716
SacI	GAGCTC	1 cut(s)	1140
SaqAI	TTAA	6 cut(s)	81, 297, 456, 494, 662, 819
SatI	GCNGC	7 cut(s)	231, 279, 302, 477, 1033, 1036, 1039
Sau3AI	GATC	2 cut(s)	678, 933
Sau96I	GGNCC	2 cut(s)	802, 1255
SchI	GAGTC	2 cut(s)	1057, 1320
ScrFI	CCNGG	3 cut(s)	193, 729, 1207
SduI	GDGCHC	3 cut(s)	400, 443, 1140
SfaNI	GCATC	2 cut(s)	522, 693
Sfr274I	CTCGAG	1 cut(s)	674
SinI	GGWCC	2 cut(s)	802, 1255
SlaI	CTCGAG	1 cut(s)	674
SmlI	CTYRAG	3 cut(s)	674, 1133, 1163
SmoI	CTYRAG	3 cut(s)	674, 1133, 1163
Sse9I	AATT	8 cut(s)	91, 180, 268, 294, 334, 406, 871, 952
SsiI	CCGC	1 cut(s)	1032
SspI	AATATT	1 cut(s)	36
SspMI	CTAG	2 cut(s)	393, 866
SstI	GAGCTC	1 cut(s)	1140
StyD4I	CCNGG	3 cut(s)	191, 727, 1205
StyI	CCWWGG	1 cut(s)	1060
TaiI	ACGT	2 cut(s)	210, 901
TaqI	TCGA	1 cut(s)	675
TasI	AATT	8 cut(s)	91, 180, 268, 294, 334, 406, 871, 952
TauI	GCSGC	1 cut(s)	1035
TfiI	GAWTC	6 cut(s)	248, 560, 635, 883, 1094, 1111
Tru1I	TTAA	6 cut(s)	81, 297, 456, 494, 662, 819
Tru9I	TTAA	6 cut(s)	81, 297, 456, 494, 662, 819
TscAI	CASTG	3 cut(s)	405, 430, 1012
TseFI	GTSAC	1 cut(s)	1189
TseI	GCWGC	6 cut(s)	230, 278, 301, 476, 1035, 1038
Tsp45I	GTSAC	1 cut(s)	1189
TspDTI	ATGAA	6 cut(s)	147, 150, 757, 810, 933, 1277
TspGWI	ACGGA	2 cut(s)	1079, 1317
TspRI	CASTG	3 cut(s)	405, 430, 1012
Van91I	CCANNNNNTGG	1 cut(s)	799
VneI	GTGCAC	1 cut(s)	439
VpaK11BI	GGWCC	2 cut(s)	802, 1255
XapI	RAATTY	5 cut(s)	91, 268, 334, 406, 952
XceI	RCATGY	1 cut(s)	613
XhoI	CTCGAG	1 cut(s)	674
XmnI	GAANNNNTTC	1 cut(s)	1271
XspI	CTAG	2 cut(s)	393, 866

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.