Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0011756

Physical Location & Seq

Genomic Coordinates Forward (+)

15993957 .. 15995685

Gene Structure 1729 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT4G33160.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1374 bp

ATGCCCTCCTCTGCTACTAGCACATATCTCCTCTCTTTAAAACAAGTCTCTCTCACAGCTTCTTCACCACTCCTTCTCCAGCTCAAAGACCGTTTCTTTCACCAGCCAAAGCTCCTTAACATGGGATTCTCAACTGGGAAAAGAAAATCAAGAGATGAAGAAGAAGATAGAGTGAGCTTCTTCGCTTCTGAATTCCCCATGGATGACCTCAACGATGACGTTCTCGAGAGAGTCCTCTCATGGCTACCAACTTCTTGCTTCTTTCGTATGAGCTCTGTTTGCAAAAGATGGAAATCAAGCCAAACCTCGAAAAGCTTCAAGCTTGCTTGCTCTCAAATCCCTACTCGAGATCCTTGGTTCTTCATGATCGACAACGATTCCAATTCTTCCTCCTTCGTTTTCGACTCCACTGAGAACTCCTGGAAAAATCTCAACCGCCGCGATTTCCTCCACCACCACCGTCAAGATTTCATCCCCGTCGCTTCTTCCGGCGGCTTGCTCTGTTACCGCTGCTCCATCTCCGGCGACTTCCTCCTCCGTAATCCACTCACTGGATCTTCTCGTGACATTCCTTCTCAAGATAACAACAACAACAAACCTCTCCAAGCCGTAGCCATGACCACCACTACTGTTACTCCCTCCAGCTATACGCTCGTTACCATCTCCGGTGAAATCCCAAATCTCAGTTTCAAGATCTACGAATCAAACGCAGATTCTTGGAGCAAAGACCAAGAACTGGAATCAGTCAAGAACAATGATTCATCATTACATGATGATTATGATACTGACAGTGGCACAGTCTACTTTCTTAGCAAACAAGGAAACGTTGTCGTGGCGAGTAACAATCTTCAGAGAAGTCCGTCGAAGCAATACTCTTCCGTTATTACCGTTACAGATGAAGCCGAAATCGTCTATTTTCTCAGCTCTTACGGAACAATTGTAGCTTGTGATCTCACTAAACGATGCTTCACCGAGCTACCAAAGCTTCTTCCTCCGTTCCTAGAGTACTCCATCGACTTGGTGGAATGTGAAGGAACAATGTATGTGATTCTTCTCTCTGAGTTCTTTGAAAGCGCAAGTTTAAGGATCTGGAGACTTGACAATAACCGGGAATGGGTTCAAGTCGGGATGTTGCCTCCCGCGTTGTCTCATGAGTTATACGGTAAGAAAGGCGACATAAACTGCGTTGGAGGAGCTGGAAACAAGATACTCGTGTGCTTCAATGCTAGTCCTCCAGAAGTGTATTGTAGATACTTTGTGTATGATTTAGTTGCAGAAGAGTGGAACGAGTTGCCGAAATGCTTCAAGGATGGAGAAGCTGTGGATTTTGTTTCCGCTCTTTCTTTCCAGCCTAGGATCGAGGCTACAGTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004842 GO:0006464 GO:0006508 GO:0006511 GO:0006807 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009987 GO:0010498 GO:0016567 GO:0016740 GO:0019538 GO:0019787 GO:0019941 GO:0030163 GO:0031146 GO:0032446 GO:0036211 GO:0043161 GO:0043170 GO:0043412 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0051603 GO:0070647 GO:0071704 GO:0140096 GO:1901564 GO:1901565 GO:1901575

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

F-box

Protein Analysis

457

Amino Acids

51.66

Weight (kDa)

5.08

Isoelectric Point (pI)

47.96

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
F-box	PF00646	68 - 107	4.6e-08	F-box domain
Beta-prop_KIB1-4	PF03478	160 - 378	2.6e-08	KIB1-4 beta-propeller

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0011756)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G33160 AT4G33160
fragaria_vesca	FvH4_2g37090
malus_domestica	MD08G1047200.v1.1 MD15G1046700.v1.1
prunus_persica	Prupe.1G401100_v2.0.a1
pyrus_communis	pycom08g03960 pycom15g04440 pycom15g04450
rosa_chinensis	RchiOBHm_Chr6g0304701
rosa_multiflora	Rmu_co8288461.1_g000001 Rmu_sc0003341.1_g000008
rosa_roxburghii	Rroxscaffold_7G00163580
rosa_rugosa	Rorug06G0333600
rosa_samantha	Rh6AG445700 Rh6BG456200 Rh6CG458600 Rh6DG445800
rosa_wichuraiana	Rw6G038760

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	2 cut(s)	551, 736
AccBSI	CCGCTC	1 cut(s)	1337
AccI	GTMKAC	1 cut(s)	801
AccII	CGCG	2 cut(s)	441, 1142
AciI	CCGC	6 cut(s)	436, 439, 492, 508, 1140, 1335
AclI	AACGTT	1 cut(s)	825
AclWI	GGATC	4 cut(s)	344, 562, 1094, 1364
AcsI	RAATTY	1 cut(s)	191
AcuI	CTGAAG	1 cut(s)	833
AfaI	GTAC	1 cut(s)	1007
AfiI	CCNNNNNNNGG	4 cut(s)	121, 551, 736, 1114
AgsI	TTSAA	6 cut(s)	319, 691, 1070, 1121, 1222, 1306
AjnI	CCWGG	1 cut(s)	419
Alw21I	GWGCWC	1 cut(s)	275
Alw26I	GTCTC	3 cut(s)	52, 1087, 1152
AlwI	GGATC	4 cut(s)	344, 562, 1094, 1364
Ama87I	CYCGRG	2 cut(s)	224, 345
ApeKI	GCWGC	1 cut(s)	510
ApoI	RAATTY	1 cut(s)	191
Asp700I	GAANNNNTTC	3 cut(s)	314, 1116, 1301
AspA2I	CCTAGG	1 cut(s)	1352
AspLEI	GCGC	1 cut(s)	1076
AsuC2I	CCSGG	1 cut(s)	1109
AsuHPI	GGTGA	4 cut(s)	57, 92, 680, 961
AvaI	CYCGRG	2 cut(s)	224, 345
AvrII	CCTAGG	1 cut(s)	1352
BaeI	ACNNNNGTAYC	2 cut(s)	1199, 1232
BanII	GRGCYC	1 cut(s)	275
BauI	CACGAG	2 cut(s)	561, 1211
Bbv12I	GWGCWC	1 cut(s)	275
BbvI	GCAGC	1 cut(s)	497
BccI	CCATC	5 cut(s)	282, 524, 668, 1019, 1304
BceAI	ACGGC	1 cut(s)	593
BciT130I	CCWGG	1 cut(s)	421
BcnI	CCSGG	1 cut(s)	1109
BcoDI	GTCTC	3 cut(s)	52, 1087, 1152
BfaI	CTAG	4 cut(s)	18, 1001, 1227, 1353
BfmI	CTRYAG	1 cut(s)	1365
BglII	AGATCT	1 cut(s)	693
BisI	GCNGC	3 cut(s)	439, 493, 511
BlnI	CCTAGG	1 cut(s)	1352
BlsI	GCNGC	3 cut(s)	440, 494, 512
BmcAI	AGTACT	1 cut(s)	1007
Bme1390I	CCNGG	2 cut(s)	421, 1109
BmeT110I	CYCGRG	2 cut(s)	224, 345
BmrFI	CCNGG	2 cut(s)	421, 1109
BmrI	ACTGGG	1 cut(s)	144
BmsI	GCATC	1 cut(s)	953
BmuI	ACTGGG	1 cut(s)	144
BpmI	CTGGAG	4 cut(s)	62, 625, 1111, 1218
BpuEI	CTTGAG	1 cut(s)	561
BpuMI	CCSGG	1 cut(s)	1109
BsaBI	GATNNNNATC	1 cut(s)	292
BsaJI	CCNNGG	3 cut(s)	198, 353, 1352
BsaWI	WCCGGW	1 cut(s)	665
BsaXI	ACNNNNNCTCC	8 cut(s)	60, 90, 497, 527, 619, 649, 1305, 1335
Bsc4I	CCNNNNNNNGG	4 cut(s)	121, 551, 736, 1114
Bse1I	ACTGG	3 cut(s)	139, 556, 741
Bse8I	GATNNNNATC	1 cut(s)	292
BseBI	CCWGG	1 cut(s)	421
BseDI	CCNNGG	3 cut(s)	198, 353, 1352
BseGI	GGATG	4 cut(s)	208, 471, 1134, 1315
BseJI	GATNNNNATC	1 cut(s)	292
BseLI	CCNNNNNNNGG	4 cut(s)	121, 551, 736, 1114
BseMII	CTCAG	4 cut(s)	402, 697, 934, 1050
BseNI	ACTGG	3 cut(s)	139, 556, 741
BseRI	GAGGAG	3 cut(s)	20, 524, 1206
BseXI	GCAGC	1 cut(s)	497
Bsh1236I	CGCG	2 cut(s)	441, 1142
BsiHKAI	GWGCWC	1 cut(s)	275
BsiHKCI	CYCGRG	2 cut(s)	224, 345
BsiSI	CCGG	4 cut(s)	489, 522, 666, 1108
BslI	CCNNNNNNNGG	4 cut(s)	121, 551, 736, 1114
BsmAI	GTCTC	3 cut(s)	52, 1087, 1152
BsoBI	CYCGRG	2 cut(s)	224, 345
Bsp1286I	GDGCHC	1 cut(s)	275
Bsp143I	GATC	7 cut(s)	349, 366, 554, 693, 949, 1086, 1356
Bsp19I	CCATGG	1 cut(s)	198
BspACI	CCGC	6 cut(s)	436, 439, 492, 508, 1140, 1335
BspCNI	CTCAG	4 cut(s)	403, 696, 933, 1051
BspFNI	CGCG	2 cut(s)	441, 1142
BspHI	TCATGA	2 cut(s)	363, 1150
BspPI	GGATC	4 cut(s)	344, 562, 1094, 1364
BsrBI	CCGCTC	1 cut(s)	1337
BsrI	ACTGG	3 cut(s)	139, 556, 741
BssECI	CCNNGG	3 cut(s)	198, 353, 1352
BssMI	GATC	7 cut(s)	349, 366, 554, 693, 949, 1086, 1356
BssSI	CACGAG	2 cut(s)	561, 1211
BssT1I	CCWWGG	3 cut(s)	198, 353, 1352
Bst2BI	CACGAG	2 cut(s)	561, 1211
Bst2UI	CCWGG	1 cut(s)	421
Bst4CI	ACNGT	8 cut(s)	92, 461, 631, 791, 799, 889, 1163, 1369
Bst6I	CTCTTC	2 cut(s)	880, 1272
BstC8I	GCNNGC	3 cut(s)	324, 328, 497
BstDEI	CTNAG	5 cut(s)	411, 683, 809, 920, 1059
BstDSI	CCRYGG	1 cut(s)	198
BstF5I	GGATG	4 cut(s)	208, 471, 1134, 1315
BstFNI	CGCG	2 cut(s)	441, 1142
BstHHI	GCGC	1 cut(s)	1076
BstKTI	GATC	7 cut(s)	352, 369, 557, 696, 952, 1089, 1359
BstMAI	GTCTC	3 cut(s)	52, 1087, 1152
BstMBI	GATC	7 cut(s)	349, 366, 554, 693, 949, 1086, 1356
BstMWI	GCNNNNNNNGC	2 cut(s)	279, 982
BstNI	CCWGG	1 cut(s)	421
BstSCI	CCNGG	2 cut(s)	419, 1107
BstSFI	CTRYAG	1 cut(s)	1365
BstUI	CGCG	2 cut(s)	441, 1142
BstV1I	GCAGC	1 cut(s)	497
BstX2I	RGATCY	4 cut(s)	349, 554, 693, 1086
BstXI	CCANNNNNNTGG	1 cut(s)	1018
BstYI	RGATCY	4 cut(s)	349, 554, 693, 1086
BtgI	CCRYGG	1 cut(s)	198
BtsCI	GGATG	4 cut(s)	208, 471, 1134, 1315
BtsIMutI	CAGTG	3 cut(s)	408, 549, 796
Cac8I	GCNNGC	3 cut(s)	324, 328, 497
CciI	TCATGA	2 cut(s)	363, 1150
CfoI	GCGC	1 cut(s)	1076
Csp6I	GTAC	1 cut(s)	1006
CviAII	CATG	7 cut(s)	121, 199, 240, 364, 616, 770, 1151
CviQI	GTAC	1 cut(s)	1006
DdeI	CTNAG	5 cut(s)	411, 683, 809, 920, 1059
DpnI	GATC	7 cut(s)	351, 368, 556, 695, 951, 1088, 1358
DpnII	GATC	7 cut(s)	349, 366, 554, 693, 949, 1086, 1356
DraI	TTTAAA	1 cut(s)	39
Eam1104I	CTCTTC	2 cut(s)	880, 1272
EarI	CTCTTC	2 cut(s)	880, 1272
Ecl136II	GAGCTC	1 cut(s)	273
Eco130I	CCWWGG	3 cut(s)	198, 353, 1352
Eco24I	GRGCYC	1 cut(s)	275
Eco53kI	GAGCTC	1 cut(s)	273
Eco57I	CTGAAG	1 cut(s)	833
Eco88I	CYCGRG	2 cut(s)	224, 345
EcoICRI	GAGCTC	1 cut(s)	273
EcoRI	GAATTC	1 cut(s)	191
EcoRII	CCWGG	1 cut(s)	419
EcoT14I	CCWWGG	3 cut(s)	198, 353, 1352
EcoT38I	GRGCYC	1 cut(s)	275
ErhI	CCWWGG	3 cut(s)	198, 353, 1352
FaeI	CATG	7 cut(s)	124, 202, 243, 367, 619, 773, 1154
FatI	CATG	7 cut(s)	120, 198, 239, 363, 615, 769, 1150
FauI	CCCGC	1 cut(s)	1147
FblI	GTMKAC	1 cut(s)	801
Fnu4HI	GCNGC	3 cut(s)	439, 493, 511
FokI	GGATG	4 cut(s)	215, 458, 1141, 1322
FriOI	GRGCYC	1 cut(s)	275
Fsp4HI	GCNGC	3 cut(s)	439, 493, 511
FspBI	CTAG	4 cut(s)	18, 1001, 1227, 1353
GlaI	GCGC	1 cut(s)	1075
GluI	GCNGC	3 cut(s)	439, 493, 511
GsuI	CTGGAG	4 cut(s)	62, 625, 1111, 1218
HapII	CCGG	4 cut(s)	489, 522, 666, 1108
HhaI	GCGC	1 cut(s)	1076
Hin1II	CATG	7 cut(s)	124, 202, 243, 367, 619, 773, 1154
Hin6I	GCGC	1 cut(s)	1074
HinP1I	GCGC	1 cut(s)	1074
HindIII	AAGCTT	3 cut(s)	313, 320, 983
HinfI	GANTC	9 cut(s)	126, 231, 377, 404, 701, 713, 740, 758, 1048
HpaII	CCGG	4 cut(s)	489, 522, 666, 1108
HphI	GGTGA	4 cut(s)	57, 92, 680, 961
Hpy166II	GTNNAC	1 cut(s)	802
Hpy188I	TCNGA	3 cut(s)	190, 852, 1060
Hpy8I	GTNNAC	1 cut(s)	802
Hpy99I	CGWCG	2 cut(s)	482, 865
HpyAV	CCTTC	4 cut(s)	83, 403, 582, 1025
HpyCH4III	ACNGT	8 cut(s)	92, 461, 631, 791, 799, 889, 1163, 1369
HpyCH4IV	ACGT	2 cut(s)	219, 825
HpyCH4V	TGCA	2 cut(s)	282, 1274
HpyF10VI	GCNNNNNNNGC	2 cut(s)	279, 982
HpyF3I	CTNAG	5 cut(s)	411, 683, 809, 920, 1059
HpySE526I	ACGT	2 cut(s)	219, 825
Hsp92II	CATG	7 cut(s)	124, 202, 243, 367, 619, 773, 1154
HspAI	GCGC	1 cut(s)	1074
Kzo9I	GATC	7 cut(s)	349, 366, 554, 693, 949, 1086, 1356
LmnI	GCTCC	4 cut(s)	117, 518, 720, 1193
Lsp1109I	GCAGC	1 cut(s)	497
LweI	GCATC	1 cut(s)	953
MaeI	CTAG	4 cut(s)	18, 1001, 1227, 1353
MaeII	ACGT	2 cut(s)	219, 825
MaeIII	GTNAC	6 cut(s)	503, 563, 631, 655, 839, 889
MalI	GATC	7 cut(s)	351, 368, 556, 695, 951, 1088, 1358
MbiI	CCGCTC	1 cut(s)	1337
MboI	GATC	7 cut(s)	349, 366, 554, 693, 949, 1086, 1356
MfeI	CAATTG	1 cut(s)	936
MflI	RGATCY	4 cut(s)	349, 554, 693, 1086
MhlI	GDGCHC	1 cut(s)	275
MluCI	AATT	3 cut(s)	191, 382, 936
MlyI	GAGTC	2 cut(s)	240, 398
MmeI	TCCRAC	1 cut(s)	1168
MroXI	GAANNNNTTC	3 cut(s)	314, 1116, 1301
MseI	TTAA	3 cut(s)	38, 117, 1082
MspA1I	CMGCKG	1 cut(s)	510
MspI	CCGG	4 cut(s)	489, 522, 666, 1108
MspR9I	CCNGG	2 cut(s)	421, 1109
MunI	CAATTG	1 cut(s)	936
MvaI	CCWGG	1 cut(s)	421
MvnI	CGCG	2 cut(s)	441, 1142
MwoI	GCNNNNNNNGC	2 cut(s)	279, 982
NciI	CCSGG	1 cut(s)	1109
NcoI	CCATGG	1 cut(s)	198
NdeII	GATC	7 cut(s)	349, 366, 554, 693, 949, 1086, 1356
NlaIII	CATG	7 cut(s)	124, 202, 243, 367, 619, 773, 1154
NmuCI	GTSAC	1 cut(s)	563
PaeR7I	CTCGAG	2 cut(s)	224, 345
PagI	TCATGA	2 cut(s)	363, 1150
PdmI	GAANNNNTTC	3 cut(s)	314, 1116, 1301
PfeI	GAWTC	7 cut(s)	126, 377, 701, 713, 740, 758, 1048
PflMI	CCANNNNNTGG	2 cut(s)	551, 736
PfoI	TCCNGGA	1 cut(s)	419
PkrI	GCNGC	3 cut(s)	440, 494, 512
PleI	GAGTC	2 cut(s)	239, 398
PpsI	GAGTC	2 cut(s)	239, 398
Psp124BI	GAGCTC	1 cut(s)	275
Psp1406I	AACGTT	1 cut(s)	825
Psp6I	CCWGG	1 cut(s)	419
PspGI	CCWGG	1 cut(s)	419
PsuI	RGATCY	4 cut(s)	349, 554, 693, 1086
RsaI	GTAC	1 cut(s)	1007
RsaNI	GTAC	1 cut(s)	1006
SacI	GAGCTC	1 cut(s)	275
SaqAI	TTAA	3 cut(s)	38, 117, 1082
SatI	GCNGC	3 cut(s)	439, 493, 511
Sau3AI	GATC	7 cut(s)	349, 366, 554, 693, 949, 1086, 1356
ScaI	AGTACT	1 cut(s)	1007
SchI	GAGTC	2 cut(s)	240, 398
ScrFI	CCNGG	2 cut(s)	421, 1109
SduI	GDGCHC	1 cut(s)	275
SfaNI	GCATC	1 cut(s)	953
SfcI	CTRYAG	1 cut(s)	1365
Sfr274I	CTCGAG	2 cut(s)	224, 345
SlaI	CTCGAG	2 cut(s)	224, 345
SmlI	CTYRAG	3 cut(s)	224, 345, 576
SmoI	CTYRAG	3 cut(s)	224, 345, 576
Sse9I	AATT	3 cut(s)	191, 382, 936
SsiI	CCGC	6 cut(s)	436, 439, 492, 508, 1140, 1335
SspMI	CTAG	4 cut(s)	18, 1001, 1227, 1353
SstI	GAGCTC	1 cut(s)	275
StyD4I	CCNGG	2 cut(s)	419, 1107
StyI	CCWWGG	3 cut(s)	198, 353, 1352
TaaI	ACNGT	8 cut(s)	92, 461, 631, 791, 799, 889, 1163, 1369
TaiI	ACGT	2 cut(s)	222, 828
TaqI	TCGA	8 cut(s)	225, 308, 346, 369, 402, 863, 1014, 1359
TasI	AATT	3 cut(s)	191, 382, 936
TatI	WGTACW	1 cut(s)	1005
TauI	GCSGC	2 cut(s)	441, 495
TfiI	GAWTC	7 cut(s)	126, 377, 701, 713, 740, 758, 1048
Tru1I	TTAA	3 cut(s)	38, 117, 1082
Tru9I	TTAA	3 cut(s)	38, 117, 1082
TscAI	CASTG	3 cut(s)	415, 556, 796
TseFI	GTSAC	1 cut(s)	563
TseI	GCWGC	1 cut(s)	510
Tsp45I	GTSAC	1 cut(s)	563
TspDTI	ATGAA	5 cut(s)	171, 352, 460, 750, 912
TspGWI	ACGGA	5 cut(s)	527, 849, 868, 945, 984
TspRI	CASTG	3 cut(s)	415, 556, 796
Van91I	CCANNNNNTGG	2 cut(s)	551, 736
XapI	RAATTY	1 cut(s)	191
XcmI	CCANNNNNNNNNTGG	1 cut(s)	1018
XhoI	CTCGAG	2 cut(s)	224, 345
XmaJI	CCTAGG	1 cut(s)	1352
XmiI	GTMKAC	1 cut(s)	801
XmnI	GAANNNNTTC	3 cut(s)	314, 1116, 1301
XspI	CTAG	4 cut(s)	18, 1001, 1227, 1353
ZrmI	AGTACT	1 cut(s)	1007

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.