Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8288461.1

Orthogroup ID

OG0011756

Physical Location & Seq

Genomic Coordinates Reverse (-)

263 .. 781

Gene Structure 519 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8288461.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 519 bp

atgcaaagaagcccatccaagcaatactcatctgttatcactaacaaagatggtgaggaaatagtccatttccttagctcctcgggctcaatcgtggcttgcaatctgacctccaagtgcttcattgagtacccgaggctactccccgttttctatgagtactccattgacttggtggagtgtggaggcaggatgctggtggttctgttgtcggagttctttgaaagtgcgagccttagggtttggtgttatgatgaggatgttcgaagttggcaacaaattgcagcaatgccaccagcaatgtcccatgagtggtatggcaagaatgtggatatcaactgtgtcggggcaggtgaccagatattgatttgcttaagctctgcagagatttctagctgtgttatgtgtgacttggctgctaatgaatgggttgaattgcccaaatgctatgtggatggtgaagccatcaagtttatgtctgctttctcattccagccaaggattgaggcttctctatga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004842 GO:0006464 GO:0006508 GO:0006511 GO:0006807 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009987 GO:0010498 GO:0016567 GO:0016740 GO:0019538 GO:0019787 GO:0019941 GO:0030163 GO:0031146 GO:0032446 GO:0036211 GO:0043161 GO:0043170 GO:0043412 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0051603 GO:0070647 GO:0071704 GO:0140096 GO:1901564 GO:1901565 GO:1901575

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

F-box

Protein Analysis

172

Amino Acids

19.28

Weight (kDa)

4.56

Isoelectric Point (pI)

58.34

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0011756)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G33160 AT4G33160
fragaria_vesca	FvH4_2g37090
malus_domestica	MD08G1047200.v1.1 MD15G1046700.v1.1
prunus_persica	Prupe.1G401100_v2.0.a1
pyrus_communis	pycom08g03960 pycom15g04440 pycom15g04450
rosa_chinensis	RchiOBHm_Chr6g0304701
rosa_multiflora	Rmu_co8288461.1_g000001 Rmu_sc0003341.1_g000008
rosa_roxburghii	Rroxscaffold_7G00163580
rosa_rugosa	Rorug06G0333600
rosa_samantha	Rh6AG445700 Rh6BG456200 Rh6CG458600 Rh6DG445800
rosa_wichuraiana	Rw6G038760

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	341
Acc36I	ACCTGC	1 cut(s)	341
AfaI	GTAC	2 cut(s)	131, 161
AfiI	CCNNNNNNNGG	1 cut(s)	312
AflII	CTTAAG	1 cut(s)	373
AgsI	TTSAA	2 cut(s)	224, 434
AluBI	AGCT	3 cut(s)	78, 378, 396
AluI	AGCT	3 cut(s)	78, 378, 396
Ama87I	CYCGRG	2 cut(s)	82, 133
ApeKI	GCWGC	2 cut(s)	284, 416
AsuHPI	GGTGA	3 cut(s)	65, 365, 470
AsuII	TTCGAA	1 cut(s)	265
AvaI	CYCGRG	2 cut(s)	82, 133
AxyI	CCTNAGG	1 cut(s)	236
BanII	GRGCYC	1 cut(s)	89
BbvI	GCAGC	2 cut(s)	296, 403
BccI	CCATC	4 cut(s)	22, 44, 449, 473
BfaI	CTAG	1 cut(s)	393
BfmI	CTRYAG	1 cut(s)	381
BfrI	CTTAAG	1 cut(s)	373
BfuAI	ACCTGC	1 cut(s)	341
BisI	GCNGC	2 cut(s)	285, 417
BlsI	GCNGC	2 cut(s)	286, 418
BmcAI	AGTACT	1 cut(s)	161
BmeT110I	CYCGRG	2 cut(s)	82, 133
BmsI	GCATC	1 cut(s)	183
Bpu10I	CCTNAGC	1 cut(s)	74
Bpu14I	TTCGAA	1 cut(s)	265
BsaJI	CCNNGG	3 cut(s)	81, 134, 497
Bsc4I	CCNNNNNNNGG	1 cut(s)	312
Bse21I	CCTNAGG	1 cut(s)	236
Bse3DI	GCAATG	2 cut(s)	294, 306
BseDI	CCNNGG	3 cut(s)	81, 134, 497
BseGI	GGATG	4 cut(s)	14, 198, 265, 460
BseLI	CCNNNNNNNGG	1 cut(s)	312
BseMI	GCAATG	2 cut(s)	294, 306
BseRI	GAGGAG	1 cut(s)	70
BseXI	GCAGC	2 cut(s)	296, 403
BsiHKCI	CYCGRG	2 cut(s)	82, 133
BslFI	GGGAC	1 cut(s)	289
BslI	CCNNNNNNNGG	1 cut(s)	312
BsmFI	GGGAC	1 cut(s)	289
BsoBI	CYCGRG	2 cut(s)	82, 133
Bsp119I	TTCGAA	1 cut(s)	265
Bsp1286I	GDGCHC	1 cut(s)	89
BspMAI	CTGCAG	1 cut(s)	385
BspMI	ACCTGC	1 cut(s)	341
BspT104I	TTCGAA	1 cut(s)	265
BspTI	CTTAAG	1 cut(s)	373
BsrDI	GCAATG	2 cut(s)	294, 306
BssECI	CCNNGG	3 cut(s)	81, 134, 497
BssT1I	CCWWGG	1 cut(s)	497
Bst4CI	ACNGT	1 cut(s)	341
BstAFI	CTTAAG	1 cut(s)	373
BstBI	TTCGAA	1 cut(s)	265
BstC8I	GCNNGC	2 cut(s)	100, 232
BstDEI	CTNAG	2 cut(s)	74, 236
BstEII	GGTNACC	1 cut(s)	353
BstF5I	GGATG	4 cut(s)	14, 198, 265, 460
BstMWI	GCNNNNNNNGC	1 cut(s)	84
BstPI	GGTNACC	1 cut(s)	353
BstSFI	CTRYAG	1 cut(s)	381
BstV1I	GCAGC	2 cut(s)	296, 403
BstXI	CCANNNNNNTGG	1 cut(s)	172
Bsu36I	CCTNAGG	1 cut(s)	236
BtsCI	GGATG	4 cut(s)	14, 198, 265, 460
BveI	ACCTGC	1 cut(s)	341
Cac8I	GCNNGC	2 cut(s)	100, 232
Csp6I	GTAC	2 cut(s)	130, 160
CviAII	CATG	1 cut(s)	308
CviQI	GTAC	2 cut(s)	130, 160
DdeI	CTNAG	2 cut(s)	74, 236
Eco130I	CCWWGG	1 cut(s)	497
Eco24I	GRGCYC	1 cut(s)	89
Eco32I	GATATC	1 cut(s)	334
Eco81I	CCTNAGG	1 cut(s)	236
Eco88I	CYCGRG	2 cut(s)	82, 133
Eco91I	GGTNACC	1 cut(s)	353
EcoO65I	GGTNACC	1 cut(s)	353
EcoRV	GATATC	1 cut(s)	334
EcoT14I	CCWWGG	1 cut(s)	497
EcoT38I	GRGCYC	1 cut(s)	89
ErhI	CCWWGG	1 cut(s)	497
FaeI	CATG	1 cut(s)	311
FaiI	YATR	8 cut(s)	156, 252, 309, 318, 404, 450, 476, 517
FaqI	GGGAC	1 cut(s)	289
FatI	CATG	1 cut(s)	307
Fnu4HI	GCNGC	2 cut(s)	285, 417
FokI	GGATG	3 cut(s)	205, 272, 467
FriOI	GRGCYC	1 cut(s)	89
Fsp4HI	GCNGC	2 cut(s)	285, 417
FspBI	CTAG	1 cut(s)	393
GluI	GCNGC	2 cut(s)	285, 417
Hin1II	CATG	1 cut(s)	311
HphI	GGTGA	3 cut(s)	65, 365, 470
Hpy188I	TCNGA	2 cut(s)	108, 214
HpyCH4III	ACNGT	1 cut(s)	341
HpyCH4V	TGCA	4 cut(s)	4, 102, 284, 383
HpyF10VI	GCNNNNNNNGC	1 cut(s)	84
HpyF3I	CTNAG	2 cut(s)	74, 236
Hsp92II	CATG	1 cut(s)	311
LmnI	GCTCC	1 cut(s)	83
LpnPI	CCDG	6 cut(s)	175, 182, 309, 336, 371, 506
Lsp1109I	GCAGC	2 cut(s)	296, 403
LweI	GCATC	1 cut(s)	183
MaeI	CTAG	1 cut(s)	393
MaeIII	GTNAC	2 cut(s)	353, 407
MhlI	GDGCHC	1 cut(s)	89
MluCI	AATT	2 cut(s)	279, 434
MmeI	TCCRAC	1 cut(s)	192
MnlI	CCTC	7 cut(s)	49, 91, 121, 129, 179, 250, 499
MseI	TTAA	1 cut(s)	374
MspCI	CTTAAG	1 cut(s)	373
MwoI	GCNNNNNNNGC	1 cut(s)	84
NlaIII	CATG	1 cut(s)	311
NmuCI	GTSAC	2 cut(s)	353, 407
NspV	TTCGAA	1 cut(s)	265
PaqCI	CACCTGC	1 cut(s)	341
PkrI	GCNGC	2 cut(s)	286, 418
PspEI	GGTNACC	1 cut(s)	353
PstI	CTGCAG	1 cut(s)	385
RsaI	GTAC	2 cut(s)	131, 161
RsaNI	GTAC	2 cut(s)	130, 160
SaqAI	TTAA	1 cut(s)	374
SatI	GCNGC	2 cut(s)	285, 417
ScaI	AGTACT	1 cut(s)	161
SduI	GDGCHC	1 cut(s)	89
SetI	ASST	5 cut(s)	80, 113, 355, 380, 398
SfaNI	GCATC	1 cut(s)	183
SfcI	CTRYAG	1 cut(s)	381
SfuI	TTCGAA	1 cut(s)	265
SmlI	CTYRAG	1 cut(s)	373
SmoI	CTYRAG	1 cut(s)	373
Sse9I	AATT	2 cut(s)	279, 434
SspMI	CTAG	1 cut(s)	393
StyI	CCWWGG	1 cut(s)	497
TaaI	ACNGT	1 cut(s)	341
TaqI	TCGA	1 cut(s)	265
TasI	AATT	2 cut(s)	279, 434
TatI	WGTACW	1 cut(s)	159
Tru1I	TTAA	1 cut(s)	374
Tru9I	TTAA	1 cut(s)	374
TseFI	GTSAC	2 cut(s)	353, 407
TseI	GCWGC	2 cut(s)	284, 416
Tsp45I	GTSAC	2 cut(s)	353, 407
TspDTI	ATGAA	2 cut(s)	112, 438
Vha464I	CTTAAG	1 cut(s)	373
XcmI	CCANNNNNNNNNTGG	3 cut(s)	172, 314, 448
XspI	CTAG	1 cut(s)	393
ZrmI	AGTACT	1 cut(s)	161

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.