Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr15

Orthogroup ID

OG0011756

Physical Location & Seq

Genomic Coordinates Forward (+)

2666516 .. 2667109

Gene Structure 594 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom15g04440.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 594 bp

ATGGAGCACAACAATTCCCCAGCTTTTAAGATGAATCGGAAGAGAAAATCCCAAGAACAAGATGATGGCTTTTCAAACACATTTTATATGGATGAGGTTAACGAAGACCTTCTTGAAAGGGTGCTTTCGAGGCTACCAACATCTACATTCTTCCGCCTTACTTCGGTATGCAAAAGATGGAAATCAGTTACATCTTCTCCCAGTTTCAAGCTTGCCTGCTCTCAGATTCCTTCTCGGGATCCTTGGTTTTTCATGGTCGATCCCCTTCTTAACCGGTCTATTGTCTTTGACTCCGCTGAAAGAAGCTGGAAGAAACTCAATCATCCGCCTCTCCTCCAGACAAAATCCAACTGCAATTCCATGCCTGTTTCAGCTTCTGGTGGCTTGATCTGTTTCCGCAATTCACAGGGCAACTTCATTGTATCCAACCCTGTGACAGGGGTTTGCAACGAACACCCTCCGCTGGATCCATCCTTACAAAATCTCACATTCCATGCCATTGTGATGAGCTCAAGTCCCAAGTATCGATCAATCATCTTACAAGCTTGTTGTTGTCTTTGGCGAGCTTCCAAATTTGTCCTTCCGAGTGTATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004842 GO:0006464 GO:0006508 GO:0006511 GO:0006807 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009987 GO:0010498 GO:0016567 GO:0016740 GO:0019538 GO:0019787 GO:0019941 GO:0030163 GO:0031146 GO:0032446 GO:0036211 GO:0043161 GO:0043170 GO:0043412 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0051603 GO:0070647 GO:0071704 GO:0140096 GO:1901564 GO:1901565 GO:1901575

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

F-box

Protein Analysis

198

Amino Acids

22.37

Weight (kDa)

9.24

Isoelectric Point (pI)

70.69

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
F-box	PF00646	35 - 70	1.6e-08	F-box domain
F-box-like	PF12937	36 - 68	4.8e-06	F-box-like

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0011756)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G33160 AT4G33160
fragaria_vesca	FvH4_2g37090
malus_domestica	MD08G1047200.v1.1 MD15G1046700.v1.1
prunus_persica	Prupe.1G401100_v2.0.a1
pyrus_communis	pycom08g03960 pycom15g04440 pycom15g04450
rosa_chinensis	RchiOBHm_Chr6g0304701
rosa_multiflora	Rmu_co8288461.1_g000001 Rmu_sc0003341.1_g000008
rosa_roxburghii	Rroxscaffold_7G00163580
rosa_rugosa	Rorug06G0333600
rosa_samantha	Rh6AG445700 Rh6BG456200 Rh6CG458600 Rh6DG445800
rosa_wichuraiana	Rw6G038760

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	5 cut(s)	154, 294, 326, 397, 461
AclWI	GGATC	5 cut(s)	233, 246, 254, 461, 474
AcsI	RAATTY	1 cut(s)	572
AfiI	CCNNNNNNNGG	3 cut(s)	163, 437, 463
AgeI	ACCGGT	1 cut(s)	273
AgsI	TTSAA	3 cut(s)	75, 116, 208
AluBI	AGCT	7 cut(s)	23, 211, 306, 374, 510, 545, 566
AluI	AGCT	7 cut(s)	23, 211, 306, 374, 510, 545, 566
Alw21I	GWGCWC	2 cut(s)	9, 512
AlwI	GGATC	5 cut(s)	233, 246, 254, 461, 474
AlwNI	CAGNNNCTG	1 cut(s)	377
Ama87I	CYCGRG	1 cut(s)	234
ApoI	RAATTY	1 cut(s)	572
AsiGI	ACCGGT	1 cut(s)	273
Asp700I	GAANNNNTTC	1 cut(s)	108
AvaI	CYCGRG	1 cut(s)	234
BamHI	GGATCC	2 cut(s)	238, 466
BanII	GRGCYC	1 cut(s)	512
BbsI	GAAGAC	1 cut(s)	111
Bbv12I	GWGCWC	2 cut(s)	9, 512
BccI	CCATC	3 cut(s)	59, 171, 478
BciVI	GTATCC	1 cut(s)	433
BfuI	GTATCC	1 cut(s)	433
BmeT110I	CYCGRG	1 cut(s)	234
BmiI	GGNNCC	2 cut(s)	240, 468
BmrI	ACTGGG	1 cut(s)	195
BmuI	ACTGGG	1 cut(s)	195
BpiI	GAAGAC	1 cut(s)	111
BpmI	CTGGAG	1 cut(s)	320
BpuEI	CTTGAG	1 cut(s)	496
Bsa29I	ATCGAT	1 cut(s)	526
BsaBI	GATNNNNATC	1 cut(s)	181
BsaJI	CCNNGG	1 cut(s)	242
BsaWI	WCCGGW	1 cut(s)	273
BsaXI	ACNNNNNCTCC	2 cut(s)	181, 211
Bsc4I	CCNNNNNNNGG	3 cut(s)	163, 437, 463
Bse118I	RCCGGY	1 cut(s)	273
Bse1I	ACTGG	1 cut(s)	201
Bse8I	GATNNNNATC	1 cut(s)	181
BseCI	ATCGAT	1 cut(s)	526
BseDI	CCNNGG	1 cut(s)	242
BseGI	GGATG	3 cut(s)	97, 322, 470
BseJI	GATNNNNATC	1 cut(s)	181
BseLI	CCNNNNNNNGG	3 cut(s)	163, 437, 463
BseMII	CTCAG	1 cut(s)	236
BseNI	ACTGG	1 cut(s)	201
BseRI	GAGGAG	1 cut(s)	323
BseYI	CCCAGC	1 cut(s)	19
BshTI	ACCGGT	1 cut(s)	273
BshVI	ATCGAT	1 cut(s)	526
BsiHKAI	GWGCWC	2 cut(s)	9, 512
BsiHKCI	CYCGRG	1 cut(s)	234
BsiSI	CCGG	1 cut(s)	274
BslFI	GGGAC	1 cut(s)	501
BslI	CCNNNNNNNGG	3 cut(s)	163, 437, 463
BsmFI	GGGAC	1 cut(s)	501
BsoBI	CYCGRG	1 cut(s)	234
Bsp1286I	GDGCHC	2 cut(s)	9, 512
Bsp143I	GATC	5 cut(s)	238, 259, 387, 466, 527
BspACI	CCGC	5 cut(s)	154, 294, 326, 397, 461
BspCNI	CTCAG	1 cut(s)	235
BspDI	ATCGAT	1 cut(s)	526
BspLI	GGNNCC	2 cut(s)	240, 468
BspPI	GGATC	5 cut(s)	233, 246, 254, 461, 474
BsrFI	RCCGGY	1 cut(s)	273
BsrI	ACTGG	1 cut(s)	201
BssAI	RCCGGY	1 cut(s)	273
BssECI	CCNNGG	1 cut(s)	242
BssMI	GATC	5 cut(s)	238, 259, 387, 466, 527
BssT1I	CCWWGG	1 cut(s)	242
Bst6I	CTCTTC	1 cut(s)	35
BstC8I	GCNNGC	3 cut(s)	213, 217, 564
BstDEI	CTNAG	1 cut(s)	222
BstENI	CCTNNNNNAGG	1 cut(s)	435
BstF5I	GGATG	3 cut(s)	97, 322, 470
BstKTI	GATC	5 cut(s)	241, 262, 390, 469, 530
BstMBI	GATC	5 cut(s)	238, 259, 387, 466, 527
BstMWI	GCNNNNNNNGC	1 cut(s)	130
BstV2I	GAAGAC	1 cut(s)	111
BstX2I	RGATCY	2 cut(s)	238, 466
BstYI	RGATCY	2 cut(s)	238, 466
Bsu15I	ATCGAT	1 cut(s)	526
BsuI	GTATCC	1 cut(s)	433
BsuTUI	ATCGAT	1 cut(s)	526
BtsCI	GGATG	3 cut(s)	97, 322, 470
Cac8I	GCNNGC	3 cut(s)	213, 217, 564
CaiI	CAGNNNCTG	1 cut(s)	377
Cfr10I	RCCGGY	1 cut(s)	273
ClaI	ATCGAT	1 cut(s)	526
CspAI	ACCGGT	1 cut(s)	273
CviAII	CATG	3 cut(s)	253, 361, 494
DdeI	CTNAG	1 cut(s)	222
DpnI	GATC	5 cut(s)	240, 261, 389, 468, 529
DpnII	GATC	5 cut(s)	238, 259, 387, 466, 527
Eam1104I	CTCTTC	1 cut(s)	35
EarI	CTCTTC	1 cut(s)	35
EciI	GGCGGA	2 cut(s)	143, 315
Ecl136II	GAGCTC	1 cut(s)	510
Eco130I	CCWWGG	1 cut(s)	242
Eco24I	GRGCYC	1 cut(s)	512
Eco53kI	GAGCTC	1 cut(s)	510
Eco88I	CYCGRG	1 cut(s)	234
EcoICRI	GAGCTC	1 cut(s)	510
EcoNI	CCTNNNNNAGG	1 cut(s)	435
EcoT14I	CCWWGG	1 cut(s)	242
EcoT38I	GRGCYC	1 cut(s)	512
ErhI	CCWWGG	1 cut(s)	242
FaeI	CATG	3 cut(s)	256, 364, 497
FaiI	YATR	7 cut(s)	87, 89, 169, 254, 362, 495, 592
FalI	AAGNNNNNCTT	2 cut(s)	96, 128
FaqI	GGGAC	1 cut(s)	501
FatI	CATG	3 cut(s)	252, 360, 493
FokI	GGATG	3 cut(s)	104, 309, 457
FriOI	GRGCYC	1 cut(s)	512
GsaI	CCCAGC	1 cut(s)	23
GsuI	CTGGAG	1 cut(s)	320
HapII	CCGG	1 cut(s)	274
Hin1II	CATG	3 cut(s)	256, 364, 497
HincII	GTYRAC	1 cut(s)	100
HindII	GTYRAC	1 cut(s)	100
HindIII	AAGCTT	2 cut(s)	209, 543
HinfI	GANTC	3 cut(s)	34, 226, 290
HpaI	GTTAAC	1 cut(s)	100
HpaII	CCGG	1 cut(s)	274
Hpy166II	GTNNAC	1 cut(s)	100
Hpy188I	TCNGA	3 cut(s)	39, 225, 585
Hpy188III	TCNNGA	3 cut(s)	113, 236, 337
Hpy8I	GTNNAC	1 cut(s)	100
HpyAV	CCTTC	4 cut(s)	119, 240, 275, 590
HpyCH4V	TGCA	3 cut(s)	171, 354, 447
HpyF10VI	GCNNNNNNNGC	1 cut(s)	130
HpyF3I	CTNAG	1 cut(s)	222
Hsp92II	CATG	3 cut(s)	256, 364, 497
KspAI	GTTAAC	1 cut(s)	100
Kzo9I	GATC	5 cut(s)	238, 259, 387, 466, 527
LmnI	GCTCC	1 cut(s)	4
MaeIII	GTNAC	2 cut(s)	187, 433
MalI	GATC	5 cut(s)	240, 261, 389, 468, 529
MboI	GATC	5 cut(s)	238, 259, 387, 466, 527
MboII	GAAGA	5 cut(s)	52, 116, 142, 186, 322
MflI	RGATCY	2 cut(s)	238, 466
MhlI	GDGCHC	2 cut(s)	9, 512
MluCI	AATT	4 cut(s)	13, 355, 400, 572
MlyI	GAGTC	1 cut(s)	284
MmeI	TCCRAC	2 cut(s)	372, 450
MnlI	CCTC	5 cut(s)	88, 123, 339, 344, 468
MroXI	GAANNNNTTC	1 cut(s)	108
MseI	TTAA	3 cut(s)	27, 99, 270
MslI	CAYNNNNRTG	1 cut(s)	503
MspA1I	CMGCKG	2 cut(s)	296, 463
MspI	CCGG	1 cut(s)	274
MwoI	GCNNNNNNNGC	1 cut(s)	130
NdeII	GATC	5 cut(s)	238, 259, 387, 466, 527
NlaIII	CATG	3 cut(s)	256, 364, 497
NlaIV	GGNNCC	2 cut(s)	240, 468
NmuCI	GTSAC	1 cut(s)	433
PdmI	GAANNNNTTC	1 cut(s)	108
PfeI	GAWTC	2 cut(s)	34, 226
PinAI	ACCGGT	1 cut(s)	273
PleI	GAGTC	1 cut(s)	284
PpsI	GAGTC	1 cut(s)	284
Psp124BI	GAGCTC	1 cut(s)	512
PspFI	CCCAGC	1 cut(s)	19
PspN4I	GGNNCC	2 cut(s)	240, 468
PstNI	CAGNNNCTG	1 cut(s)	377
PsuI	RGATCY	2 cut(s)	238, 466
RseI	CAYNNNNRTG	1 cut(s)	503
SacI	GAGCTC	1 cut(s)	512
SaqAI	TTAA	3 cut(s)	27, 99, 270
Sau3AI	GATC	5 cut(s)	238, 259, 387, 466, 527
SchI	GAGTC	1 cut(s)	284
SduI	GDGCHC	2 cut(s)	9, 512
SetI	ASST	9 cut(s)	25, 99, 111, 213, 308, 376, 512, 547, 568
SmiMI	CAYNNNNRTG	1 cut(s)	503
SmlI	CTYRAG	1 cut(s)	511
SmoI	CTYRAG	1 cut(s)	511
Sse9I	AATT	4 cut(s)	13, 355, 400, 572
SsiI	CCGC	5 cut(s)	154, 294, 326, 397, 461
SstI	GAGCTC	1 cut(s)	512
StyI	CCWWGG	1 cut(s)	242
TaqI	TCGA	3 cut(s)	128, 258, 526
TasI	AATT	4 cut(s)	13, 355, 400, 572
TfiI	GAWTC	2 cut(s)	34, 226
Tru1I	TTAA	3 cut(s)	27, 99, 270
Tru9I	TTAA	3 cut(s)	27, 99, 270
TseFI	GTSAC	1 cut(s)	433
Tsp45I	GTSAC	1 cut(s)	433
TspDTI	ATGAA	3 cut(s)	47, 241, 406
XagI	CCTNNNNNAGG	1 cut(s)	435
XapI	RAATTY	1 cut(s)	572
XmnI	GAANNNNTTC	1 cut(s)	108

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.