MD08G1047200.v1.1

F-box only protein

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr08
Physical Location & Seq
Reverse (-)
3563151 .. 3565886
2736 bp
Loading structure...
UTR
Exon/CDS
Intron
MD08G1047200.v1.1.491

Sequence Viewer

Length: 1248 bp
ATGGAGCACAACATTTGCCCAGCTTTTACGATGAATCGGAAGAGAAAATCCCTAGAGCAAGATGATTGCATTTCAAGCACCTTTGGTATGGATGAGCTTAATGAAGACCTTCTCGAAAGGGTGCTGTCGAGACTACCAACATCTGCCTTCTTCCGCCTTACTTCGGTGTGCAAAAGATGGAAATCAGTTGCATCTTCTCCCAGTTTTAAGCTTGCCTGCTCTCAGATCCCCTCTCGGGATCCATGGTTTTTCATGGTCGATCCCTTTCTCAATCGATCAATTGTCTTTGACTCCTCTGAAAGAAGCTGGAAGAAACTCAATCATCCCCCTCTCCTGCAGACAAACTCCAACTGCAATTCCATGCCTGTTTCAGCATCTGGTGGCTTGATCTGTTTCCGCAATTCACAGGGCAACTTCATTGTATCCAACCCCGTAACAGGAGTTTGCAACGAACACCCTCCACTGGATCCATCCTTGCAAAATCTCACATTCCATGCCATTGTGATGAGCTCATATACAAAGTATGATCAGTCCTCTTATAAGCTTGTTGTAGTCTTCGGCGAGTTTCCAAAACTGTCCTTTCGAGTGTATAACTCAAGCACTGCCTGCTGGGAAGAAGAGACAGCCTTGTGTAAAAACTTTGACGATGATGATTCAACAGAATCAGACTCAAACGATGACAGTGCCGTTTACTTCCTTAGCAAGGCTGGAAACGTAGTGGCAACCAACATGCAAAGAAGCCCATCCAAGCAATACTCGTCCGTCATGACTACCAAAAATGGCGAGGAGACACTCCATTTCCTCAGCTCATCAGGCTCAGTTGTAGCCTGCAACCTGACCACCAAGTGCTTCTCGGAGTACCCCAGGCTACTCCCAGTCTTCTTCGAGTACTCCATTGACTTGGTAGCATGCGGAGGCAGAATGCTGGTGGTTCTTCTCTCAGAATTCTTCGAAAGCGCGAGCCTCAGGGTGTGGTGCTACGATGAGGAAGCTCGATCGTGGCAACAAATTGCAGCAATGCCTCCCGCGATGTCACACGAGTGGTATGGCAAGAATGTGGACATAAACTGCGTAGGGGCCGGTGATCAGTTACTGATCTGCTTAAGCTCTGCCGAGATTTCGAGCTGTGTTCTGTGTGACTTGACTGCCAATGATTGGATTGAATTGCCCAAATGTTTTGTGGATGGTGAAGCCATCAAGTTCTTGTCTGCCTTCTCATTTGAGCCAAGGATTGAGGCTTCTATGTGA

Protein Analysis

416

Amino Acids

46.51

Weight (kDa)

4.97

Isoelectric Point (pI)

56.58

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
F-box PF00646 31 - 70 7.5e-09 F-box domain
F-box-like PF12937 36 - 68 8.9e-06 F-box-like
Beta-prop_KIB1-4 PF03478 120 - 340 2.4e-08 KIB1-4 beta-propeller
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes (Group: OG0011756)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 540
AccB7I CCANNNNNTGG 1 cut(s) 1155
AccII CGCG 2 cut(s) 959, 1028
AciI CCGC 4 cut(s) 154, 397, 912, 1026
AclWI GGATC 6 cut(s) 220, 233, 246, 254, 461, 474
AcsI RAATTY 1 cut(s) 944
AdeI CACNNNGTG 1 cut(s) 846
AfaI GTAC 2 cut(s) 860, 890
AfiI CCNNNNNNNGG 6 cut(s) 163, 235, 437, 463, 703, 1155
AflII CTTAAG 1 cut(s) 1102
AgsI TTSAA 3 cut(s) 75, 657, 1163
AjnI CCWGG 1 cut(s) 863
AleI CACNNNNGTG 1 cut(s) 1039
Alw21I GWGCWC 2 cut(s) 9, 512
Alw26I GTCTC 3 cut(s) 124, 614, 782
AlwI GGATC 6 cut(s) 220, 233, 246, 254, 461, 474
AlwNI CAGNNNCTG 2 cut(s) 377, 1093
Ama87I CYCGRG 1 cut(s) 234
AoxI GGCC 1 cut(s) 1077
ApeKI GCWGC 1 cut(s) 1013
ApoI RAATTY 1 cut(s) 944
Asp700I GAANNNNTTC 1 cut(s) 108
AspLEI GCGC 1 cut(s) 959
AspS9I GGNCC 1 cut(s) 1077
AsuHPI GGTGA 2 cut(s) 1094, 1199
AsuII TTCGAA 1 cut(s) 951
AvaI CYCGRG 1 cut(s) 234
AxyI CCTNAGG 1 cut(s) 965
BamHI GGATCC 2 cut(s) 238, 466
BanII GRGCYC 1 cut(s) 512
BauI CACGAG 1 cut(s) 1037
BbsI GAAGAC 3 cut(s) 111, 547, 871
Bbv12I GWGCWC 2 cut(s) 9, 512
BbvCI CCTCAGC 1 cut(s) 803
BbvI GCAGC 1 cut(s) 1025
BccI CCATC 5 cut(s) 171, 478, 751, 1178, 1202
BceAI ACGGC 1 cut(s) 671
BcgI CGANNNNNNTGC 2 cut(s) 665, 699
BciT130I CCWGG 1 cut(s) 865
BciVI GTATCC 1 cut(s) 433
BclI TGATCA 2 cut(s) 526, 1084
BcoDI GTCTC 3 cut(s) 124, 614, 782
BfaI CTAG 1 cut(s) 53
BfmI CTRYAG 1 cut(s) 335
BfrI CTTAAG 1 cut(s) 1102
BfuI GTATCC 1 cut(s) 433
BisI GCNGC 1 cut(s) 1014
BlsI GCNGC 1 cut(s) 1015
BmcAI AGTACT 1 cut(s) 890
Bme1390I CCNGG 1 cut(s) 865
BmeT110I CYCGRG 1 cut(s) 234
BmgT120I GGNCC 1 cut(s) 1077
BmiI GGNNCC 3 cut(s) 240, 468, 1078
BmrFI CCNGG 1 cut(s) 865
BmrI ACTGGG 2 cut(s) 195, 869
BmsI GCATC 2 cut(s) 200, 383
BmuI ACTGGG 2 cut(s) 195, 869
BpiI GAAGAC 3 cut(s) 111, 547, 871
Bpu10I CCTNAGC 2 cut(s) 698, 803
Bpu14I TTCGAA 1 cut(s) 951
BpuEI CTTGAG 1 cut(s) 580
Bsa29I ATCGAT 1 cut(s) 274
BsaBI GATNNNNATC 1 cut(s) 181
BsaJI CCNNGG 3 cut(s) 242, 863, 1226
Bsc4I CCNNNNNNNGG 6 cut(s) 163, 235, 437, 463, 703, 1155
Bse118I RCCGGY 1 cut(s) 1079
Bse1I ACTGG 3 cut(s) 201, 468, 875
Bse21I CCTNAGG 1 cut(s) 965
Bse3DI GCAATG 1 cut(s) 1023
Bse8I GATNNNNATC 1 cut(s) 181
BseBI CCWGG 1 cut(s) 865
BseCI ATCGAT 1 cut(s) 274
BseDI CCNNGG 3 cut(s) 242, 863, 1226
BseGI GGATG 5 cut(s) 97, 322, 470, 743, 1189
BseJI GATNNNNATC 1 cut(s) 181
BseLI CCNNNNNNNGG 6 cut(s) 163, 235, 437, 463, 703, 1155
BseMI GCAATG 1 cut(s) 1023
BseMII CTCAG 5 cut(s) 236, 817, 831, 954, 979
BseNI ACTGG 3 cut(s) 201, 468, 875
BseRI GAGGAG 2 cut(s) 283, 800
BseXI GCAGC 1 cut(s) 1025
BseYI CCCAGC 2 cut(s) 19, 609
Bsh1236I CGCG 2 cut(s) 959, 1028
Bsh1285I CGRYCG 1 cut(s) 998
BshFI GGCC 1 cut(s) 1079
BshVI ATCGAT 1 cut(s) 274
BsiEI CGRYCG 1 cut(s) 998
BsiHKAI GWGCWC 2 cut(s) 9, 512
BsiHKCI CYCGRG 1 cut(s) 234
BsiSI CCGG 1 cut(s) 1080
BslI CCNNNNNNNGG 6 cut(s) 163, 235, 437, 463, 703, 1155
BsmAI GTCTC 3 cut(s) 124, 614, 782
BsmI GAATGC 1 cut(s) 927
BsnI GGCC 1 cut(s) 1079
BsoBI CYCGRG 1 cut(s) 234
Bsp119I TTCGAA 1 cut(s) 951
Bsp1286I GDGCHC 2 cut(s) 9, 512
Bsp19I CCATGG 1 cut(s) 242
BspACI CCGC 4 cut(s) 154, 397, 912, 1026
BspANI GGCC 1 cut(s) 1079
BspCNI CTCAG 5 cut(s) 235, 816, 830, 953, 978
BspDI ATCGAT 1 cut(s) 274
BspFNI CGCG 2 cut(s) 959, 1028
BspHI TCATGA 1 cut(s) 765
BspLI GGNNCC 3 cut(s) 240, 468, 1078
BspMAI CTGCAG 1 cut(s) 339
BspPI GGATC 6 cut(s) 220, 233, 246, 254, 461, 474
BspT104I TTCGAA 1 cut(s) 951
BspTI CTTAAG 1 cut(s) 1102
BsrDI GCAATG 1 cut(s) 1023
BsrFI RCCGGY 1 cut(s) 1079
BsrI ACTGG 3 cut(s) 201, 468, 875
BssAI RCCGGY 1 cut(s) 1079
BssECI CCNNGG 3 cut(s) 242, 863, 1226
BssSI CACGAG 1 cut(s) 1037
BssT1I CCWWGG 2 cut(s) 242, 1226
Bst2BI CACGAG 1 cut(s) 1037
Bst2UI CCWGG 1 cut(s) 865
Bst4CI ACNGT 2 cut(s) 576, 683
Bst6I CTCTTC 2 cut(s) 35, 612
BstAFI CTTAAG 1 cut(s) 1102
BstAPI GCANNNNNTGC 1 cut(s) 606
BstBI TTCGAA 1 cut(s) 951
BstC8I GCNNGC 6 cut(s) 213, 217, 607, 829, 910, 961
BstDEI CTNAG 6 cut(s) 222, 698, 803, 817, 940, 965
BstDSI CCRYGG 1 cut(s) 242
BstENI CCTNNNNNAGG 1 cut(s) 701
BstF5I GGATG 5 cut(s) 97, 322, 470, 743, 1189
BstFNI CGCG 2 cut(s) 959, 1028
BstHHI GCGC 1 cut(s) 959
BstMAI GTCTC 3 cut(s) 124, 614, 782
BstMCI CGRYCG 1 cut(s) 998
BstMWI GCNNNNNNNGC 3 cut(s) 75, 606, 813
BstNI CCWGG 1 cut(s) 865
BstNSI RCATGY 2 cut(s) 733, 912
BstSCI CCNGG 1 cut(s) 863
BstSFI CTRYAG 1 cut(s) 335
BstUI CGCG 2 cut(s) 959, 1028
BstV1I GCAGC 1 cut(s) 1025
BstV2I GAAGAC 3 cut(s) 111, 547, 871
BstX2I RGATCY 3 cut(s) 225, 238, 466
BstXI CCANNNNNNTGG 1 cut(s) 901
BstYI RGATCY 3 cut(s) 225, 238, 466
Bsu15I ATCGAT 1 cut(s) 274
Bsu36I CCTNAGG 1 cut(s) 965
BsuI GTATCC 1 cut(s) 433
BsuRI GGCC 1 cut(s) 1079
BsuTUI ATCGAT 1 cut(s) 274
BtgI CCRYGG 1 cut(s) 242
BtgZI GCGATG 1 cut(s) 1043
BtsCI GGATG 5 cut(s) 97, 322, 470, 743, 1189
BtsI GCAGTG 1 cut(s) 600
BtsIMutI CAGTG 3 cut(s) 461, 600, 688
Cac8I GCNNGC 6 cut(s) 213, 217, 607, 829, 910, 961
CaiI CAGNNNCTG 2 cut(s) 377, 1093
CciI TCATGA 1 cut(s) 765
CfoI GCGC 1 cut(s) 959
Cfr10I RCCGGY 1 cut(s) 1079
Cfr13I GGNCC 1 cut(s) 1077
ClaI ATCGAT 1 cut(s) 274
Csp6I GTAC 2 cut(s) 859, 889
CviAII CATG 7 cut(s) 243, 253, 361, 494, 730, 766, 909
CviQI GTAC 2 cut(s) 859, 889
DdeI CTNAG 6 cut(s) 222, 698, 803, 817, 940, 965
DraIII CACNNNGTG 1 cut(s) 846
Eam1104I CTCTTC 2 cut(s) 35, 612
EarI CTCTTC 2 cut(s) 35, 612
EciI GGCGGA 1 cut(s) 143
Ecl136II GAGCTC 1 cut(s) 510
Eco130I CCWWGG 2 cut(s) 242, 1226
Eco24I GRGCYC 1 cut(s) 512
Eco53kI GAGCTC 1 cut(s) 510
Eco81I CCTNAGG 1 cut(s) 965
Eco88I CYCGRG 1 cut(s) 234
EcoICRI GAGCTC 1 cut(s) 510
EcoNI CCTNNNNNAGG 1 cut(s) 701
EcoRI GAATTC 1 cut(s) 944
EcoRII CCWGG 1 cut(s) 863
EcoT14I CCWWGG 2 cut(s) 242, 1226
EcoT38I GRGCYC 1 cut(s) 512
ErhI CCWWGG 2 cut(s) 242, 1226
FaeI CATG 7 cut(s) 246, 256, 364, 497, 733, 769, 912
FatI CATG 7 cut(s) 242, 252, 360, 493, 729, 765, 908
FauI CCCGC 1 cut(s) 1033
FbaI TGATCA 2 cut(s) 526, 1084
Fnu4HI GCNGC 1 cut(s) 1014
FokI GGATG 5 cut(s) 104, 309, 457, 730, 1196
FriOI GRGCYC 1 cut(s) 512
Fsp4HI GCNGC 1 cut(s) 1014
FspBI CTAG 1 cut(s) 53
GlaI GCGC 1 cut(s) 958
GluI GCNGC 1 cut(s) 1014
GsaI CCCAGC 2 cut(s) 23, 613
HaeIII GGCC 1 cut(s) 1079
HapII CCGG 1 cut(s) 1080
HhaI GCGC 1 cut(s) 959
Hin1II CATG 7 cut(s) 246, 256, 364, 497, 733, 769, 912
Hin6I GCGC 1 cut(s) 957
HinP1I GCGC 1 cut(s) 957
HindIII AAGCTT 2 cut(s) 209, 542
HinfI GANTC 5 cut(s) 34, 290, 653, 662, 668
HpaII CCGG 1 cut(s) 1080
HphI GGTGA 2 cut(s) 1094, 1199
Hpy166II GTNNAC 2 cut(s) 691, 1060
Hpy188I TCNGA 6 cut(s) 39, 225, 298, 667, 856, 943
Hpy188III TCNNGA 4 cut(s) 113, 129, 236, 766
Hpy8I GTNNAC 2 cut(s) 691, 1060
HpyAV CCTTC 3 cut(s) 119, 157, 1222
HpyCH4III ACNGT 2 cut(s) 576, 683
HpyCH4IV ACGT 1 cut(s) 714
HpyF10VI GCNNNNNNNGC 3 cut(s) 75, 606, 813
HpyF3I CTNAG 6 cut(s) 222, 698, 803, 817, 940, 965
HpySE526I ACGT 1 cut(s) 714
Hsp92II CATG 7 cut(s) 246, 256, 364, 497, 733, 769, 912
HspAI GCGC 1 cut(s) 957
Ksp22I TGATCA 2 cut(s) 526, 1084
LmnI GCTCC 1 cut(s) 4
Lsp1109I GCAGC 1 cut(s) 1025
LweI GCATC 2 cut(s) 200, 383
MaeI CTAG 1 cut(s) 53
MaeII ACGT 1 cut(s) 714
MaeIII GTNAC 4 cut(s) 433, 1032, 1089, 1136
MfeI CAATTG 1 cut(s) 279
MflI RGATCY 3 cut(s) 225, 238, 466
MhlI GDGCHC 2 cut(s) 9, 512
MluCI AATT 6 cut(s) 279, 355, 400, 944, 1008, 1163
MlyI GAGTC 2 cut(s) 284, 662
MmeI TCCRAC 2 cut(s) 372, 450
MroXI GAANNNNTTC 1 cut(s) 108
MseI TTAA 3 cut(s) 99, 207, 1103
MslI CAYNNNNRTG 2 cut(s) 503, 1039
MspCI CTTAAG 1 cut(s) 1102
MspI CCGG 1 cut(s) 1080
MspR9I CCNGG 1 cut(s) 865
MunI CAATTG 1 cut(s) 279
Mva1269I GAATGC 1 cut(s) 927
MvaI CCWGG 1 cut(s) 865
MvnI CGCG 2 cut(s) 959, 1028
MwoI GCNNNNNNNGC 3 cut(s) 75, 606, 813
NcoI CCATGG 1 cut(s) 242
NlaIII CATG 7 cut(s) 246, 256, 364, 497, 733, 769, 912
NlaIV GGNNCC 3 cut(s) 240, 468, 1078
NmeAIII GCCGAG 1 cut(s) 1138
NmuCI GTSAC 2 cut(s) 1032, 1136
NspI RCATGY 2 cut(s) 733, 912
NspV TTCGAA 1 cut(s) 951
OliI CACNNNNGTG 1 cut(s) 1039
PaeI GCATGC 1 cut(s) 912
PagI TCATGA 1 cut(s) 765
PctI GAATGC 1 cut(s) 927
PdmI GAANNNNTTC 1 cut(s) 108
PfeI GAWTC 3 cut(s) 34, 653, 662
PflMI CCANNNNNTGG 1 cut(s) 1155
PkrI GCNGC 1 cut(s) 1015
Ple19I CGATCG 1 cut(s) 998
PleI GAGTC 2 cut(s) 284, 662
PpsI GAGTC 2 cut(s) 284, 662
PsiI TTATAA 1 cut(s) 540
Psp124BI GAGCTC 1 cut(s) 512
Psp6I CCWGG 1 cut(s) 863
PspFI CCCAGC 2 cut(s) 19, 609
PspGI CCWGG 1 cut(s) 863
PspN4I GGNNCC 3 cut(s) 240, 468, 1078
PspPI GGNCC 1 cut(s) 1077
PstI CTGCAG 1 cut(s) 339
PstNI CAGNNNCTG 2 cut(s) 377, 1093
PsuI RGATCY 3 cut(s) 225, 238, 466
PvuI CGATCG 1 cut(s) 998
RsaI GTAC 2 cut(s) 860, 890
RsaNI GTAC 2 cut(s) 859, 889
RseI CAYNNNNRTG 2 cut(s) 503, 1039
SacI GAGCTC 1 cut(s) 512
SaqAI TTAA 3 cut(s) 99, 207, 1103
SatI GCNGC 1 cut(s) 1014
Sau96I GGNCC 1 cut(s) 1077
ScaI AGTACT 1 cut(s) 890
SchI GAGTC 2 cut(s) 284, 662
ScrFI CCNGG 1 cut(s) 865
SduI GDGCHC 2 cut(s) 9, 512
SfaNI GCATC 2 cut(s) 200, 383
SfcI CTRYAG 1 cut(s) 335
SfuI TTCGAA 1 cut(s) 951
SmiMI CAYNNNNRTG 2 cut(s) 503, 1039
SmlI CTYRAG 2 cut(s) 595, 1102
SmoI CTYRAG 2 cut(s) 595, 1102
SphI GCATGC 1 cut(s) 912
Sse9I AATT 6 cut(s) 279, 355, 400, 944, 1008, 1163
SsiI CCGC 4 cut(s) 154, 397, 912, 1026
SspMI CTAG 1 cut(s) 53
SstI GAGCTC 1 cut(s) 512
StyD4I CCNGG 1 cut(s) 863
StyI CCWWGG 2 cut(s) 242, 1226
TaaI ACNGT 2 cut(s) 576, 683
TaiI ACGT 1 cut(s) 717
TaqI TCGA 9 cut(s) 114, 128, 258, 274, 583, 885, 951, 994, 1121
TasI AATT 6 cut(s) 279, 355, 400, 944, 1008, 1163
TatI WGTACW 1 cut(s) 888
TfiI GAWTC 3 cut(s) 34, 653, 662
Tru1I TTAA 3 cut(s) 99, 207, 1103
Tru9I TTAA 3 cut(s) 99, 207, 1103
TscAI CASTG 3 cut(s) 468, 607, 688
TseFI GTSAC 2 cut(s) 1032, 1136
TseI GCWGC 1 cut(s) 1013
Tsp45I GTSAC 2 cut(s) 1032, 1136
TspDTI ATGAA 4 cut(s) 47, 117, 241, 406
TspGWI ACGGA 1 cut(s) 751
TspRI CASTG 3 cut(s) 468, 607, 688
Van91I CCANNNNNTGG 1 cut(s) 1155
Vha464I CTTAAG 1 cut(s) 1102
XagI CCTNNNNNAGG 1 cut(s) 701
XapI RAATTY 1 cut(s) 944
XceI RCATGY 2 cut(s) 733, 912
XcmI CCANNNNNNNNNTGG 1 cut(s) 1177
XmnI GAANNNNTTC 1 cut(s) 108
XspI CTAG 1 cut(s) 53
ZrmI AGTACT 1 cut(s) 890
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.