Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0003341.1

Orthogroup ID

OG0011756

Physical Location & Seq

Genomic Coordinates Forward (+)

30877 .. 31596

Gene Structure 720 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0003341.1_g000008.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 720 bp

atgatgactcggaagagaaagtcccaagaagagaattgcatttcaagcacatttttgatggatgagcttaatgaagaccttcttgaaggggtcctgtctaggctaccaatctctgcatttttccgtctttcttcggtttgcaagagatggaaatcagttgcaaactcttcaagtttcaagcttgcctgctcccaaatcccttctcgggatccatggttcttcatggtcgactctcatctcaatcgatccattgtgtttgactctgctgaaaaaaactggaagaaacttaaccatccacctctcctccagacaaactccaactgcaattccatgcctgtttcagcctctggtggctttatctgtttccgaaattcatatggcaacttcgtcgtgtgcaatcctgtgacagggtcctgcaatgaacaacctccactcgatccagccctacaaagcctcacattccatgccattgtgatgagctcatgtcccaacaagcatgaccagtcctcttacaggcttgtagttgtctttggtgagcttccgaagctgtcatttagagtgtacaactcaagcagcggttgctgggaagaagagatcaacttgtgcaagaggttcaatgatgatgataattcaaaggagctagatgattctacagactttgactcgaatgatgacagtgctgtttacttcctcagcaaggctggaaatgtagtggcaacc

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004842 GO:0006464 GO:0006508 GO:0006511 GO:0006807 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009987 GO:0010498 GO:0016567 GO:0016740 GO:0019538 GO:0019787 GO:0019941 GO:0030163 GO:0031146 GO:0032446 GO:0036211 GO:0043161 GO:0043170 GO:0043412 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0051603 GO:0070647 GO:0071704 GO:0140096 GO:1901564 GO:1901565 GO:1901575

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

F-box

Protein Analysis

240

Amino Acids

26.99

Weight (kDa)

5.6

Isoelectric Point (pI)

57.45

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0011756)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G33160 AT4G33160
fragaria_vesca	FvH4_2g37090
malus_domestica	MD08G1047200.v1.1 MD15G1046700.v1.1
prunus_persica	Prupe.1G401100_v2.0.a1
pyrus_communis	pycom08g03960 pycom15g04440 pycom15g04450
rosa_chinensis	RchiOBHm_Chr6g0304701
rosa_multiflora	Rmu_co8288461.1_g000001 Rmu_sc0003341.1_g000008
rosa_roxburghii	Rroxscaffold_7G00163580
rosa_rugosa	Rorug06G0333600
rosa_samantha	Rh6AG445700 Rh6BG456200 Rh6CG458600 Rh6DG445800
rosa_wichuraiana	Rw6G038760

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	228
AciI	CCGC	1 cut(s)	576
AclWI	GGATC	4 cut(s)	203, 216, 240, 431
AcsI	RAATTY	1 cut(s)	370
AfaI	GTAC	1 cut(s)	563
AfiI	CCNNNNNNNGG	4 cut(s)	205, 407, 513, 697
AgsI	TTSAA	6 cut(s)	45, 86, 171, 178, 616, 633
AloI	GAACNNNNNNTCC	2 cut(s)	200, 232
AluBI	AGCT	6 cut(s)	67, 181, 480, 538, 547, 640
AluI	AGCT	6 cut(s)	67, 181, 480, 538, 547, 640
Alw21I	GWGCWC	1 cut(s)	482
AlwI	GGATC	4 cut(s)	203, 216, 240, 431
AlwNI	CAGNNNCTG	1 cut(s)	347
Ama87I	CYCGRG	1 cut(s)	204
ApeKI	GCWGC	1 cut(s)	573
ApoI	RAATTY	1 cut(s)	370
Asp700I	GAANNNNTTC	1 cut(s)	78
AspS9I	GGNCC	2 cut(s)	91, 411
AsuHPI	GGTGA	1 cut(s)	545
AvaI	CYCGRG	1 cut(s)	204
AvaII	GGWCC	2 cut(s)	91, 411
BamHI	GGATCC	1 cut(s)	208
BanII	GRGCYC	1 cut(s)	482
BbsI	GAAGAC	1 cut(s)	81
Bbv12I	GWGCWC	1 cut(s)	482
BbvCI	CCTCAGC	1 cut(s)	692
BbvI	GCAGC	1 cut(s)	585
BccI	CCATC	3 cut(s)	52, 141, 300
BcgI	CGANNNNNNTGC	2 cut(s)	370, 404
BfaI	CTAG	2 cut(s)	99, 641
BfmI	CTRYAG	1 cut(s)	651
BisI	GCNGC	1 cut(s)	574
BlsI	GCNGC	1 cut(s)	575
Bme18I	GGWCC	2 cut(s)	91, 411
BmeT110I	CYCGRG	1 cut(s)	204
BmgT120I	GGNCC	2 cut(s)	91, 411
BmiI	GGNNCC	3 cut(s)	92, 210, 412
BpiI	GAAGAC	1 cut(s)	81
BpmI	CTGGAG	1 cut(s)	290
Bpu10I	CCTNAGC	1 cut(s)	692
BpuEI	CTTGAG	1 cut(s)	553
Bsa29I	ATCGAT	1 cut(s)	244
BsaBI	GATNNNNATC	1 cut(s)	151
BsaJI	CCNNGG	1 cut(s)	212
BsaXI	ACNNNNNCTCC	2 cut(s)	288, 318
Bsc4I	CCNNNNNNNGG	4 cut(s)	205, 407, 513, 697
Bse1I	ACTGG	2 cut(s)	281, 502
Bse3DI	GCAATG	1 cut(s)	424
Bse8I	GATNNNNATC	1 cut(s)	151
BseCI	ATCGAT	1 cut(s)	244
BseDI	CCNNGG	1 cut(s)	212
BseGI	GGATG	2 cut(s)	67, 292
BseJI	GATNNNNATC	1 cut(s)	151
BseLI	CCNNNNNNNGG	4 cut(s)	205, 407, 513, 697
BseMI	GCAATG	1 cut(s)	424
BseMII	CTCAG	1 cut(s)	706
BseNI	ACTGG	2 cut(s)	281, 502
BseRI	GAGGAG	1 cut(s)	293
BseXI	GCAGC	1 cut(s)	585
BseYI	CCCAGC	1 cut(s)	582
BshVI	ATCGAT	1 cut(s)	244
BsiHKAI	GWGCWC	1 cut(s)	482
BsiHKCI	CYCGRG	1 cut(s)	204
BslFI	GGGAC	2 cut(s)	7, 471
BslI	CCNNNNNNNGG	4 cut(s)	205, 407, 513, 697
BsmFI	GGGAC	2 cut(s)	7, 471
BsoBI	CYCGRG	1 cut(s)	204
Bsp1286I	GDGCHC	1 cut(s)	482
Bsp1407I	TGTACA	1 cut(s)	561
Bsp143I	GATC	4 cut(s)	208, 245, 436, 594
Bsp19I	CCATGG	1 cut(s)	212
BspACI	CCGC	1 cut(s)	576
BspCNI	CTCAG	1 cut(s)	705
BspDI	ATCGAT	1 cut(s)	244
BspLI	GGNNCC	3 cut(s)	92, 210, 412
BspPI	GGATC	4 cut(s)	203, 216, 240, 431
BsrDI	GCAATG	1 cut(s)	424
BsrGI	TGTACA	1 cut(s)	561
BsrI	ACTGG	2 cut(s)	281, 502
BssECI	CCNNGG	1 cut(s)	212
BssMI	GATC	4 cut(s)	208, 245, 436, 594
BssT1I	CCWWGG	1 cut(s)	212
Bst4CI	ACNGT	1 cut(s)	677
Bst6I	CTCTTC	4 cut(s)	8, 24, 172, 585
BstAPI	GCANNNNNTGC	1 cut(s)	579
BstAUI	TGTACA	1 cut(s)	561
BstC8I	GCNNGC	2 cut(s)	183, 187
BstDEI	CTNAG	1 cut(s)	692
BstDSI	CCRYGG	1 cut(s)	212
BstENI	CCTNNNNNAGG	3 cut(s)	405, 511, 695
BstF5I	GGATG	2 cut(s)	67, 292
BstKTI	GATC	4 cut(s)	211, 248, 439, 597
BstMBI	GATC	4 cut(s)	208, 245, 436, 594
BstMWI	GCNNNNNNNGC	3 cut(s)	45, 544, 579
BstSFI	CTRYAG	1 cut(s)	651
BstV1I	GCAGC	1 cut(s)	585
BstV2I	GAAGAC	1 cut(s)	81
BstX2I	RGATCY	1 cut(s)	208
BstYI	RGATCY	1 cut(s)	208
Bsu15I	ATCGAT	1 cut(s)	244
BsuTUI	ATCGAT	1 cut(s)	244
BtgI	CCRYGG	1 cut(s)	212
BtsCI	GGATG	2 cut(s)	67, 292
BtsIMutI	CAGTG	1 cut(s)	682
Cac8I	GCNNGC	2 cut(s)	183, 187
CaiI	CAGNNNCTG	1 cut(s)	347
Cfr13I	GGNCC	2 cut(s)	91, 411
ClaI	ATCGAT	1 cut(s)	244
Csp6I	GTAC	1 cut(s)	562
CviAII	CATG	6 cut(s)	213, 223, 331, 464, 483, 497
CviQI	GTAC	1 cut(s)	562
DdeI	CTNAG	1 cut(s)	692
DpnI	GATC	4 cut(s)	210, 247, 438, 596
DpnII	GATC	4 cut(s)	208, 245, 436, 594
Eam1104I	CTCTTC	4 cut(s)	8, 24, 172, 585
EarI	CTCTTC	4 cut(s)	8, 24, 172, 585
Ecl136II	GAGCTC	1 cut(s)	480
Eco130I	CCWWGG	1 cut(s)	212
Eco24I	GRGCYC	1 cut(s)	482
Eco47I	GGWCC	2 cut(s)	91, 411
Eco53kI	GAGCTC	1 cut(s)	480
Eco88I	CYCGRG	1 cut(s)	204
EcoICRI	GAGCTC	1 cut(s)	480
EcoNI	CCTNNNNNAGG	3 cut(s)	405, 511, 695
EcoO109I	RGGNCCY	2 cut(s)	91, 411
EcoT14I	CCWWGG	1 cut(s)	212
EcoT38I	GRGCYC	1 cut(s)	482
ErhI	CCWWGG	1 cut(s)	212
FaeI	CATG	6 cut(s)	216, 226, 334, 467, 486, 500
FaiI	YATR	8 cut(s)	214, 224, 332, 376, 378, 465, 484, 498
FalI	AAGNNNNNCTT	2 cut(s)	66, 98
FaqI	GGGAC	2 cut(s)	7, 471
FatI	CATG	6 cut(s)	212, 222, 330, 463, 482, 496
FauNDI	CATATG	1 cut(s)	376
FblI	GTMKAC	1 cut(s)	228
Fnu4HI	GCNGC	1 cut(s)	574
FokI	GGATG	2 cut(s)	74, 279
FriOI	GRGCYC	1 cut(s)	482
Fsp4HI	GCNGC	1 cut(s)	574
FspBI	CTAG	2 cut(s)	99, 641
GluI	GCNGC	1 cut(s)	574
GsaI	CCCAGC	1 cut(s)	586
GsuI	CTGGAG	1 cut(s)	290
Hin1II	CATG	6 cut(s)	216, 226, 334, 467, 486, 500
HincII	GTYRAC	1 cut(s)	229
HindII	GTYRAC	1 cut(s)	229
HindIII	AAGCTT	1 cut(s)	179
HinfI	GANTC	5 cut(s)	7, 230, 260, 647, 662
HphI	GGTGA	1 cut(s)	545
Hpy166II	GTNNAC	3 cut(s)	229, 562, 685
Hpy188I	TCNGA	3 cut(s)	12, 368, 543
Hpy188III	TCNNGA	3 cut(s)	83, 206, 307
Hpy8I	GTNNAC	3 cut(s)	229, 562, 685
Hpy99I	CGWCG	1 cut(s)	392
HpyAV	CCTTC	3 cut(s)	80, 89, 210
HpyCH4III	ACNGT	1 cut(s)	677
HpyCH4V	TGCA	8 cut(s)	39, 116, 141, 161, 324, 396, 417, 606
HpyF10VI	GCNNNNNNNGC	3 cut(s)	45, 544, 579
HpyF3I	CTNAG	1 cut(s)	692
Hsp92II	CATG	6 cut(s)	216, 226, 334, 467, 486, 500
Kzo9I	GATC	4 cut(s)	208, 245, 436, 594
LmnI	GCTCC	2 cut(s)	194, 637
Lsp1109I	GCAGC	1 cut(s)	585
MaeI	CTAG	2 cut(s)	99, 641
MaeIII	GTNAC	1 cut(s)	403
MalI	GATC	4 cut(s)	210, 247, 438, 596
MboI	GATC	4 cut(s)	208, 245, 436, 594
MboII	GAAGA	9 cut(s)	25, 41, 86, 123, 159, 211, 292, 599, 602
MflI	RGATCY	1 cut(s)	208
MhlI	GDGCHC	1 cut(s)	482
MluCI	AATT	4 cut(s)	34, 325, 370, 628
MlyI	GAGTC	3 cut(s)	224, 254, 656
MmeI	TCCRAC	1 cut(s)	342
MnlI	CCTC	8 cut(s)	309, 314, 355, 438, 464, 517, 603, 701
MroXI	GAANNNNTTC	1 cut(s)	78
MseI	TTAA	2 cut(s)	69, 288
MslI	CAYNNNNRTG	1 cut(s)	473
MspA1I	CMGCKG	1 cut(s)	576
MwoI	GCNNNNNNNGC	3 cut(s)	45, 544, 579
NcoI	CCATGG	1 cut(s)	212
NdeI	CATATG	1 cut(s)	376
NdeII	GATC	4 cut(s)	208, 245, 436, 594
NlaIII	CATG	6 cut(s)	216, 226, 334, 467, 486, 500
NlaIV	GGNNCC	3 cut(s)	92, 210, 412
NmuCI	GTSAC	1 cut(s)	403
PdmI	GAANNNNTTC	1 cut(s)	78
PfeI	GAWTC	1 cut(s)	647
PflFI	GACNNNGTC	1 cut(s)	409
PkrI	GCNGC	1 cut(s)	575
PleI	GAGTC	3 cut(s)	224, 254, 656
PpsI	GAGTC	3 cut(s)	224, 254, 656
PpuMI	RGGWCCY	2 cut(s)	91, 411
Psp124BI	GAGCTC	1 cut(s)	482
Psp5II	RGGWCCY	2 cut(s)	91, 411
PspFI	CCCAGC	1 cut(s)	582
PspN4I	GGNNCC	3 cut(s)	92, 210, 412
PspPI	GGNCC	2 cut(s)	91, 411
PspPPI	RGGWCCY	2 cut(s)	91, 411
PstNI	CAGNNNCTG	1 cut(s)	347
PsuI	RGATCY	1 cut(s)	208
PsyI	GACNNNGTC	1 cut(s)	409
RsaI	GTAC	1 cut(s)	563
RsaNI	GTAC	1 cut(s)	562
RseI	CAYNNNNRTG	1 cut(s)	473
SacI	GAGCTC	1 cut(s)	482
SalI	GTCGAC	1 cut(s)	227
SaqAI	TTAA	2 cut(s)	69, 288
SatI	GCNGC	1 cut(s)	574
Sau3AI	GATC	4 cut(s)	208, 245, 436, 594
Sau96I	GGNCC	2 cut(s)	91, 411
SchI	GAGTC	3 cut(s)	224, 254, 656
SduI	GDGCHC	1 cut(s)	482
SfcI	CTRYAG	1 cut(s)	651
SinI	GGWCC	2 cut(s)	91, 411
SmiMI	CAYNNNNRTG	1 cut(s)	473
SmlI	CTYRAG	1 cut(s)	568
SmoI	CTYRAG	1 cut(s)	568
Sse9I	AATT	4 cut(s)	34, 325, 370, 628
SsiI	CCGC	1 cut(s)	576
SspMI	CTAG	2 cut(s)	99, 641
SstI	GAGCTC	1 cut(s)	482
StyI	CCWWGG	1 cut(s)	212
TaaI	ACNGT	1 cut(s)	677
TaqI	TCGA	4 cut(s)	228, 244, 435, 665
TasI	AATT	4 cut(s)	34, 325, 370, 628
TatI	WGTACW	1 cut(s)	561
TfiI	GAWTC	1 cut(s)	647
Tru1I	TTAA	2 cut(s)	69, 288
Tru9I	TTAA	2 cut(s)	69, 288
TscAI	CASTG	1 cut(s)	682
TseFI	GTSAC	1 cut(s)	403
TseI	GCWGC	1 cut(s)	573
Tsp45I	GTSAC	1 cut(s)	403
TspDTI	ATGAA	4 cut(s)	87, 211, 363, 435
TspGWI	ACGGA	1 cut(s)	113
TspRI	CASTG	1 cut(s)	682
Tth111I	GACNNNGTC	1 cut(s)	409
VpaK11BI	GGWCC	2 cut(s)	91, 411
XagI	CCTNNNNNAGG	3 cut(s)	405, 511, 695
XapI	RAATTY	1 cut(s)	370
XmiI	GTMKAC	1 cut(s)	228
XmnI	GAANNNNTTC	1 cut(s)	78
XspI	CTAG	2 cut(s)	99, 641

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.