Rh6BG456200

F-box only protein

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6B
Physical Location & Seq
Reverse (-)
66858023 .. 66859291
1269 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6BG456200.1

Sequence Viewer

Length: 1269 bp
ATGGAGCAAGAAAATTGCTCAGCTTTCATGATGACTCGGAAGAGAAAGTCCCAAGAAGAGAATTGCATTTCAAGCACATTTTTGATGGATGAGCTTAATGAAGACCTTCTTGAAGGGGTCCTGTCTAGGCTACCAATCTCTGCATTTTTCCGCCTTTCTTCGGTTTGCAAGAGATGGAAATCAGTTGCAAACTCTTCAAGTTTCAAGCTTGCCTGCTCCCAAATCCCTTCTCGGGATCCATGGTTCTTCATGGTCGACTCTCATCTCAATCGATCCATTGTGTTTGACTCTGCTGAAAAAAACTGGAAGAAACTTAACCATCCACCTCTCCTCCAGACAAACTCCAACTGCAATTCCATGCCTGTTTCAGCCTCTGGTGGCTTTATCTGTTTCCGAAATTCATATGGCAACTTCGTCGTGTGCAATCCTGTGACAGGGTCCTGCAATGAACAACCTCCACTCGATCCAGCCCTACAAAGCCTCACATTCCATGCCATTGTGATGAGCTCATGTCCCAACAAGCATGACCAGTCCTCTTACAGGCTTGTAGTTGTCTTTGGTGAGCTTCCGAAGCTGTCATTTAGAGTGTACAACTCAAGCAGCGGTTGCTGGGAAGAAGAGATCACCTTGTGCAAGAAGTTCAATGATGATGATAATTCAAAGGAACTTGATGATTCTACAGACTTTGACTCGAATGATGACAGTGCTGTTTACTTCCTCAGCAAGGCTGGAAATGTAGTGGCAACCAATATGCAAAGAAGCCCATCTAAGCAATACTCATCTGTTATCACTAACAAAGATGGTGAGGAAATAGTCCATTTCCTTAGCTCCTCGGGCTCAATCGTGGCTTGCAATCTGACCTCCAAGTGCTTCATTGAGTACCCGAGGCTACTCCCCGTTTTCTATGAGTACTCCATTGACTTGGTGGAGTGTGGAGGCAGGATGCTGGTGGTTCTGTTGTCAGAGTTCTTTGAAAGTGCGAGCCTTAGGGTTTGGTGTTATGATGAGGATGTTCGAAGCTGGCAACAAATTGCAGCAATGCCACCAGCAATGTCCCATGAGTGGTATGGCAAGAATGTGGATATCAACTGTGTCGGCGCAGGTGACCAGATATTGATTTGCTTAAGCTCTGCAGAGATTTCTAGCTGTGTTATGTGTGACTTGGCTGCTAATGAATGGGTTGAATTGCCCAAATGCTACGTGGATGGTGAAGCCATCAAGTTTATGTCTGCTTTCTCATTCCAGCCAAGGATTGAGGCTTCTCTATGA

Protein Analysis

422

Amino Acids

47.37

Weight (kDa)

4.89

Isoelectric Point (pI)

56.43

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
F-box PF00646 30 - 69 1.2e-08 F-box domain
Beta-prop_KIB1-4 PF03478 119 - 347 7.2e-10 KIB1-4 beta-propeller
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes (Group: OG0011756)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 1091
Acc36I ACCTGC 1 cut(s) 1091
AccI GTMKAC 1 cut(s) 255
AciI CCGC 2 cut(s) 151, 603
AclWI GGATC 4 cut(s) 230, 243, 267, 458
AcsI RAATTY 1 cut(s) 397
AdeI CACNNNGTG 1 cut(s) 630
AfaI GTAC 3 cut(s) 590, 881, 911
AfiI CCNNNNNNNGG 6 cut(s) 160, 232, 434, 540, 724, 1062
AflII CTTAAG 1 cut(s) 1123
AgsI TTSAA 8 cut(s) 72, 113, 198, 205, 643, 660, 974, 1184
AloI GAACNNNNNNTCC 2 cut(s) 227, 259
Alw21I GWGCWC 1 cut(s) 509
AlwI GGATC 4 cut(s) 230, 243, 267, 458
AlwNI CAGNNNCTG 1 cut(s) 374
Ama87I CYCGRG 3 cut(s) 231, 832, 883
ApeKI GCWGC 3 cut(s) 600, 1034, 1166
ApoI RAATTY 1 cut(s) 397
Asp700I GAANNNNTTC 1 cut(s) 105
AspLEI GCGC 1 cut(s) 1100
AspS9I GGNCC 2 cut(s) 118, 438
AsuHPI GGTGA 5 cut(s) 572, 616, 815, 1115, 1220
AsuII TTCGAA 1 cut(s) 1015
AvaI CYCGRG 3 cut(s) 231, 832, 883
AvaII GGWCC 2 cut(s) 118, 438
AxyI CCTNAGG 1 cut(s) 986
BamHI GGATCC 1 cut(s) 235
BanII GRGCYC 2 cut(s) 509, 839
BbsI GAAGAC 1 cut(s) 108
Bbv12I GWGCWC 1 cut(s) 509
BbvCI CCTCAGC 1 cut(s) 719
BbvI GCAGC 3 cut(s) 612, 1046, 1153
BccI CCATC 7 cut(s) 79, 168, 327, 772, 794, 1199, 1223
BcgI CGANNNNNNTGC 2 cut(s) 397, 431
BfaI CTAG 2 cut(s) 126, 1143
BfmI CTRYAG 2 cut(s) 678, 1131
BfrI CTTAAG 1 cut(s) 1123
BfuAI ACCTGC 1 cut(s) 1091
BisI GCNGC 3 cut(s) 601, 1035, 1167
BlpI GCTNAGC 1 cut(s) 19
BlsI GCNGC 3 cut(s) 602, 1036, 1168
BmcAI AGTACT 1 cut(s) 911
Bme18I GGWCC 2 cut(s) 118, 438
BmeT110I CYCGRG 3 cut(s) 231, 832, 883
BmgT120I GGNCC 2 cut(s) 118, 438
BmiI GGNNCC 3 cut(s) 119, 237, 439
BmsI GCATC 1 cut(s) 933
BpiI GAAGAC 1 cut(s) 108
BpmI CTGGAG 1 cut(s) 317
Bpu10I CCTNAGC 2 cut(s) 719, 824
Bpu1102I GCTNAGC 1 cut(s) 19
Bpu14I TTCGAA 1 cut(s) 1015
BpuEI CTTGAG 1 cut(s) 580
Bsa29I ATCGAT 1 cut(s) 271
BsaAI YACGTR 1 cut(s) 1201
BsaBI GATNNNNATC 1 cut(s) 178
BsaJI CCNNGG 4 cut(s) 239, 831, 884, 1247
BsaXI ACNNNNNCTCC 2 cut(s) 315, 345
Bsc4I CCNNNNNNNGG 6 cut(s) 160, 232, 434, 540, 724, 1062
Bse1I ACTGG 2 cut(s) 308, 529
Bse21I CCTNAGG 1 cut(s) 986
Bse3DI GCAATG 3 cut(s) 451, 1044, 1056
Bse8I GATNNNNATC 1 cut(s) 178
BseCI ATCGAT 1 cut(s) 271
BseDI CCNNGG 4 cut(s) 239, 831, 884, 1247
BseGI GGATG 5 cut(s) 94, 319, 948, 1015, 1210
BseJI GATNNNNATC 1 cut(s) 178
BseLI CCNNNNNNNGG 6 cut(s) 160, 232, 434, 540, 724, 1062
BseMI GCAATG 3 cut(s) 451, 1044, 1056
BseMII CTCAG 2 cut(s) 33, 733
BseNI ACTGG 2 cut(s) 308, 529
BseRI GAGGAG 2 cut(s) 320, 820
BseXI GCAGC 3 cut(s) 612, 1046, 1153
BseYI CCCAGC 1 cut(s) 609
BshVI ATCGAT 1 cut(s) 271
BsiHKAI GWGCWC 1 cut(s) 509
BsiHKCI CYCGRG 3 cut(s) 231, 832, 883
BslFI GGGAC 3 cut(s) 34, 498, 1039
BslI CCNNNNNNNGG 6 cut(s) 160, 232, 434, 540, 724, 1062
BsmFI GGGAC 3 cut(s) 34, 498, 1039
BsoBI CYCGRG 3 cut(s) 231, 832, 883
Bsp119I TTCGAA 1 cut(s) 1015
Bsp1286I GDGCHC 2 cut(s) 509, 839
Bsp1407I TGTACA 1 cut(s) 588
Bsp143I GATC 4 cut(s) 235, 272, 463, 621
Bsp1720I GCTNAGC 1 cut(s) 19
Bsp19I CCATGG 1 cut(s) 239
BspACI CCGC 2 cut(s) 151, 603
BspCNI CTCAG 2 cut(s) 32, 732
BspDI ATCGAT 1 cut(s) 271
BspHI TCATGA 1 cut(s) 27
BspLI GGNNCC 3 cut(s) 119, 237, 439
BspMAI CTGCAG 1 cut(s) 1135
BspMI ACCTGC 1 cut(s) 1091
BspPI GGATC 4 cut(s) 230, 243, 267, 458
BspT104I TTCGAA 1 cut(s) 1015
BspTI CTTAAG 1 cut(s) 1123
BsrDI GCAATG 3 cut(s) 451, 1044, 1056
BsrGI TGTACA 1 cut(s) 588
BsrI ACTGG 2 cut(s) 308, 529
BssECI CCNNGG 4 cut(s) 239, 831, 884, 1247
BssMI GATC 4 cut(s) 235, 272, 463, 621
BssT1I CCWWGG 2 cut(s) 239, 1247
Bst4CI ACNGT 2 cut(s) 704, 1091
Bst6I CTCTTC 4 cut(s) 35, 51, 199, 612
BstAFI CTTAAG 1 cut(s) 1123
BstAPI GCANNNNNTGC 1 cut(s) 606
BstAUI TGTACA 1 cut(s) 588
BstBAI YACGTR 1 cut(s) 1201
BstBI TTCGAA 1 cut(s) 1015
BstC8I GCNNGC 5 cut(s) 210, 214, 850, 982, 1022
BstDEI CTNAG 5 cut(s) 19, 719, 768, 824, 986
BstDSI CCRYGG 1 cut(s) 239
BstEII GGTNACC 1 cut(s) 1103
BstENI CCTNNNNNAGG 3 cut(s) 432, 538, 722
BstF5I GGATG 5 cut(s) 94, 319, 948, 1015, 1210
BstHHI GCGC 1 cut(s) 1100
BstKTI GATC 4 cut(s) 238, 275, 466, 624
BstMBI GATC 4 cut(s) 235, 272, 463, 621
BstMWI GCNNNNNNNGC 4 cut(s) 72, 571, 606, 834
BstPI GGTNACC 1 cut(s) 1103
BstSFI CTRYAG 2 cut(s) 678, 1131
BstV1I GCAGC 3 cut(s) 612, 1046, 1153
BstV2I GAAGAC 1 cut(s) 108
BstX2I RGATCY 1 cut(s) 235
BstXI CCANNNNNNTGG 1 cut(s) 922
BstYI RGATCY 1 cut(s) 235
Bsu15I ATCGAT 1 cut(s) 271
Bsu36I CCTNAGG 1 cut(s) 986
BsuTUI ATCGAT 1 cut(s) 271
BtgI CCRYGG 1 cut(s) 239
BtsCI GGATG 5 cut(s) 94, 319, 948, 1015, 1210
BtsIMutI CAGTG 1 cut(s) 709
BveI ACCTGC 1 cut(s) 1091
Cac8I GCNNGC 5 cut(s) 210, 214, 850, 982, 1022
CaiI CAGNNNCTG 1 cut(s) 374
CciI TCATGA 1 cut(s) 27
CfoI GCGC 1 cut(s) 1100
Cfr13I GGNCC 2 cut(s) 118, 438
ClaI ATCGAT 1 cut(s) 271
Csp6I GTAC 3 cut(s) 589, 880, 910
CviAII CATG 8 cut(s) 28, 240, 250, 358, 491, 510, 524, 1058
CviQI GTAC 3 cut(s) 589, 880, 910
DdeI CTNAG 5 cut(s) 19, 719, 768, 824, 986
DpnI GATC 4 cut(s) 237, 274, 465, 623
DpnII GATC 4 cut(s) 235, 272, 463, 621
DraIII CACNNNGTG 1 cut(s) 630
Eam1104I CTCTTC 4 cut(s) 35, 51, 199, 612
EarI CTCTTC 4 cut(s) 35, 51, 199, 612
EciI GGCGGA 1 cut(s) 140
Ecl136II GAGCTC 1 cut(s) 507
Eco130I CCWWGG 2 cut(s) 239, 1247
Eco24I GRGCYC 2 cut(s) 509, 839
Eco32I GATATC 1 cut(s) 1084
Eco47I GGWCC 2 cut(s) 118, 438
Eco53kI GAGCTC 1 cut(s) 507
Eco81I CCTNAGG 1 cut(s) 986
Eco88I CYCGRG 3 cut(s) 231, 832, 883
Eco91I GGTNACC 1 cut(s) 1103
EcoICRI GAGCTC 1 cut(s) 507
EcoNI CCTNNNNNAGG 3 cut(s) 432, 538, 722
EcoO109I RGGNCCY 2 cut(s) 118, 438
EcoO65I GGTNACC 1 cut(s) 1103
EcoRV GATATC 1 cut(s) 1084
EcoT14I CCWWGG 2 cut(s) 239, 1247
EcoT38I GRGCYC 2 cut(s) 509, 839
ErhI CCWWGG 2 cut(s) 239, 1247
FaeI CATG 8 cut(s) 31, 243, 253, 361, 494, 513, 527, 1061
FalI AAGNNNNNCTT 2 cut(s) 93, 125
FaqI GGGAC 3 cut(s) 34, 498, 1039
FatI CATG 8 cut(s) 27, 239, 249, 357, 490, 509, 523, 1057
FauNDI CATATG 1 cut(s) 403
FblI GTMKAC 1 cut(s) 255
Fnu4HI GCNGC 3 cut(s) 601, 1035, 1167
FokI GGATG 5 cut(s) 101, 306, 955, 1022, 1217
FriOI GRGCYC 2 cut(s) 509, 839
Fsp4HI GCNGC 3 cut(s) 601, 1035, 1167
FspBI CTAG 2 cut(s) 126, 1143
GlaI GCGC 1 cut(s) 1099
GluI GCNGC 3 cut(s) 601, 1035, 1167
GsaI CCCAGC 1 cut(s) 613
GsuI CTGGAG 1 cut(s) 317
HhaI GCGC 1 cut(s) 1100
Hin1II CATG 8 cut(s) 31, 243, 253, 361, 494, 513, 527, 1061
Hin6I GCGC 1 cut(s) 1098
HinP1I GCGC 1 cut(s) 1098
HincII GTYRAC 1 cut(s) 256
HindII GTYRAC 1 cut(s) 256
HindIII AAGCTT 1 cut(s) 206
HinfI GANTC 5 cut(s) 34, 257, 287, 674, 689
HphI GGTGA 5 cut(s) 572, 616, 815, 1115, 1220
Hpy166II GTNNAC 3 cut(s) 256, 589, 712
Hpy188I TCNGA 5 cut(s) 39, 395, 570, 858, 964
Hpy188III TCNNGA 4 cut(s) 28, 110, 233, 334
Hpy8I GTNNAC 3 cut(s) 256, 589, 712
Hpy99I CGWCG 1 cut(s) 419
HpyAV CCTTC 3 cut(s) 107, 116, 237
HpyCH4III ACNGT 2 cut(s) 704, 1091
HpyCH4IV ACGT 1 cut(s) 1200
HpyF10VI GCNNNNNNNGC 4 cut(s) 72, 571, 606, 834
HpyF3I CTNAG 5 cut(s) 19, 719, 768, 824, 986
HpySE526I ACGT 1 cut(s) 1200
Hsp92II CATG 8 cut(s) 31, 243, 253, 361, 494, 513, 527, 1061
HspAI GCGC 1 cut(s) 1098
Kzo9I GATC 4 cut(s) 235, 272, 463, 621
LmnI GCTCC 3 cut(s) 4, 221, 833
Lsp1109I GCAGC 3 cut(s) 612, 1046, 1153
LweI GCATC 1 cut(s) 933
MaeI CTAG 2 cut(s) 126, 1143
MaeII ACGT 1 cut(s) 1200
MaeIII GTNAC 3 cut(s) 430, 1103, 1157
MalI GATC 4 cut(s) 237, 274, 465, 623
MboI GATC 4 cut(s) 235, 272, 463, 621
MboII GAAGA 9 cut(s) 52, 68, 113, 150, 186, 238, 319, 626, 629
MflI RGATCY 1 cut(s) 235
MhlI GDGCHC 2 cut(s) 509, 839
MluCI AATT 7 cut(s) 13, 61, 352, 397, 655, 1029, 1184
MlyI GAGTC 4 cut(s) 28, 251, 281, 683
MmeI TCCRAC 1 cut(s) 369
MroXI GAANNNNTTC 1 cut(s) 105
MseI TTAA 3 cut(s) 96, 315, 1124
MslI CAYNNNNRTG 1 cut(s) 500
MspA1I CMGCKG 1 cut(s) 603
MspCI CTTAAG 1 cut(s) 1123
MwoI GCNNNNNNNGC 4 cut(s) 72, 571, 606, 834
NcoI CCATGG 1 cut(s) 239
NdeI CATATG 1 cut(s) 403
NdeII GATC 4 cut(s) 235, 272, 463, 621
NlaIII CATG 8 cut(s) 31, 243, 253, 361, 494, 513, 527, 1061
NlaIV GGNNCC 3 cut(s) 119, 237, 439
NmuCI GTSAC 3 cut(s) 430, 1103, 1157
NspV TTCGAA 1 cut(s) 1015
PagI TCATGA 1 cut(s) 27
PaqCI CACCTGC 1 cut(s) 1091
PdmI GAANNNNTTC 1 cut(s) 105
PfeI GAWTC 1 cut(s) 674
PflFI GACNNNGTC 1 cut(s) 436
PkrI GCNGC 3 cut(s) 602, 1036, 1168
PleI GAGTC 4 cut(s) 28, 251, 281, 683
PpsI GAGTC 4 cut(s) 28, 251, 281, 683
Ppu21I YACGTR 1 cut(s) 1201
PpuMI RGGWCCY 2 cut(s) 118, 438
Psp124BI GAGCTC 1 cut(s) 509
Psp5II RGGWCCY 2 cut(s) 118, 438
PspEI GGTNACC 1 cut(s) 1103
PspFI CCCAGC 1 cut(s) 609
PspN4I GGNNCC 3 cut(s) 119, 237, 439
PspPI GGNCC 2 cut(s) 118, 438
PspPPI RGGWCCY 2 cut(s) 118, 438
PstI CTGCAG 1 cut(s) 1135
PstNI CAGNNNCTG 1 cut(s) 374
PsuI RGATCY 1 cut(s) 235
PsyI GACNNNGTC 1 cut(s) 436
RsaI GTAC 3 cut(s) 590, 881, 911
RsaNI GTAC 3 cut(s) 589, 880, 910
RseI CAYNNNNRTG 1 cut(s) 500
SacI GAGCTC 1 cut(s) 509
SalI GTCGAC 1 cut(s) 254
SaqAI TTAA 3 cut(s) 96, 315, 1124
SatI GCNGC 3 cut(s) 601, 1035, 1167
Sau3AI GATC 4 cut(s) 235, 272, 463, 621
Sau96I GGNCC 2 cut(s) 118, 438
ScaI AGTACT 1 cut(s) 911
SchI GAGTC 4 cut(s) 28, 251, 281, 683
SduI GDGCHC 2 cut(s) 509, 839
SfaNI GCATC 1 cut(s) 933
SfcI CTRYAG 2 cut(s) 678, 1131
SfuI TTCGAA 1 cut(s) 1015
SinI GGWCC 2 cut(s) 118, 438
SmiMI CAYNNNNRTG 1 cut(s) 500
SmlI CTYRAG 2 cut(s) 595, 1123
SmoI CTYRAG 2 cut(s) 595, 1123
Sse9I AATT 7 cut(s) 13, 61, 352, 397, 655, 1029, 1184
SsiI CCGC 2 cut(s) 151, 603
SspMI CTAG 2 cut(s) 126, 1143
SstI GAGCTC 1 cut(s) 509
StyI CCWWGG 2 cut(s) 239, 1247
TaaI ACNGT 2 cut(s) 704, 1091
TaiI ACGT 1 cut(s) 1203
TaqI TCGA 5 cut(s) 255, 271, 462, 692, 1015
TasI AATT 7 cut(s) 13, 61, 352, 397, 655, 1029, 1184
TatI WGTACW 2 cut(s) 588, 909
TfiI GAWTC 1 cut(s) 674
Tru1I TTAA 3 cut(s) 96, 315, 1124
Tru9I TTAA 3 cut(s) 96, 315, 1124
TscAI CASTG 1 cut(s) 709
TseFI GTSAC 3 cut(s) 430, 1103, 1157
TseI GCWGC 3 cut(s) 600, 1034, 1166
Tsp45I GTSAC 3 cut(s) 430, 1103, 1157
TspDTI ATGAA 7 cut(s) 16, 114, 238, 390, 462, 862, 1188
TspRI CASTG 1 cut(s) 709
Tth111I GACNNNGTC 1 cut(s) 436
Vha464I CTTAAG 1 cut(s) 1123
VpaK11BI GGWCC 2 cut(s) 118, 438
XagI CCTNNNNNAGG 3 cut(s) 432, 538, 722
XapI RAATTY 1 cut(s) 397
XcmI CCANNNNNNNNNTGG 3 cut(s) 922, 1064, 1198
XmiI GTMKAC 1 cut(s) 255
XmnI GAANNNNTTC 1 cut(s) 105
XspI CTAG 2 cut(s) 126, 1143
ZrmI AGTACT 1 cut(s) 911
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.