pycom15g04450

F-box only protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr15
OG0011756
Physical Location & Seq
Forward (+)
2667246 .. 2667764
519 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom15g04450.1

Sequence Viewer

Length: 519 bp
ATGCAAAGAAGCCCATCCAAGCAATACTCATCCGTAATCACTTCCAAAAAGGGCGAGGAGACAGTCTATTTCCTCAGTTCATCAGGCTCAGTTGTGGCCTGCAACCTGACCACCAAGTGCTTCTCCGAGTACCCCAGGCTACTCCCCGTCTTCTTCGAGTACTCCATCGACTTGGTAGAATGCGGAGGCAGAATGCTGGTGGTTCTTCTCTCAGAATTCTTTGAAAGCACGAACCTCAGGGTGTGGTGCTACGATGAGGAAGCTCGATCGTGGCAACAAATCGCAGCAATGCCTCCGGCGATGTCACACGAGTGGTACGGCAAGAGTGTGGACATAAACTGTGTTGGTGCCGGTAACCAGATACTGATCTGCTTAAGCTCTGCCGAGATTTCAAGCTGTGTTCTGTGTGATTTGGCTGCCAATGATTGGATTGAATTGCCCAAATGTTTTGTGGATGGTGAATCCATCAAGTTCTTGTCTGCCTTCTCATTTGAGCCAAGGATCGAGGCTTCTGTGTGA

Protein Analysis

173

Amino Acids

19.21

Weight (kDa)

4.65

Isoelectric Point (pI)

55.94

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Beta-prop_KIB1-4 PF03478 7 - 97 4.5e-06 KIB1-4 beta-propeller
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0011756)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G33160 AT4G33160
fragaria_vesca FvH4_2g37090
malus_domestica MD08G1047200.v1.1 MD15G1046700.v1.1
prunus_persica Prupe.1G401100_v2.0.a1
pyrus_communis pycom08g03960 pycom15g04440 pycom15g04450
rosa_chinensis RchiOBHm_Chr6g0304701
rosa_multiflora Rmu_co8288461.1_g000001 Rmu_sc0003341.1_g000008
rosa_roxburghii Rroxscaffold_7G00163580
rosa_rugosa Rorug06G0333600
rosa_samantha Rh6AG445700 Rh6BG456200 Rh6CG458600 Rh6DG445800
rosa_wichuraiana Rw6G038760

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 347
AccB7I CCANNNNNTGG 1 cut(s) 426
AciI CCGC 1 cut(s) 183
AclWI GGATC 1 cut(s) 509
AcsI RAATTY 1 cut(s) 215
AdeI CACNNNGTG 1 cut(s) 117
AfaI GTAC 3 cut(s) 131, 161, 317
AfiI CCNNNNNNNGG 1 cut(s) 426
AflII CTTAAG 1 cut(s) 373
AgsI TTSAA 3 cut(s) 224, 393, 434
AjnI CCWGG 1 cut(s) 134
AleI CACNNNNGTG 1 cut(s) 310
AluBI AGCT 3 cut(s) 263, 378, 396
AluI AGCT 3 cut(s) 263, 378, 396
Alw26I GTCTC 1 cut(s) 53
AlwI GGATC 1 cut(s) 509
AlwNI CAGNNNCTG 1 cut(s) 364
AoxI GGCC 1 cut(s) 96
ApeKI GCWGC 2 cut(s) 284, 416
ApoI RAATTY 1 cut(s) 215
AsuHPI GGTGA 1 cut(s) 470
AxyI CCTNAGG 1 cut(s) 236
BanI GGYRCC 1 cut(s) 347
BauI CACGAG 1 cut(s) 308
BbsI GAAGAC 1 cut(s) 142
BbvI GCAGC 2 cut(s) 296, 403
BccI CCATC 4 cut(s) 22, 173, 449, 473
BceAI ACGGC 1 cut(s) 334
BciT130I CCWGG 1 cut(s) 136
BcoDI GTCTC 1 cut(s) 53
BfrI CTTAAG 1 cut(s) 373
BisI GCNGC 2 cut(s) 285, 417
BlsI GCNGC 2 cut(s) 286, 418
BmcAI AGTACT 1 cut(s) 161
Bme1390I CCNGG 1 cut(s) 136
BmiI GGNNCC 1 cut(s) 349
BmrFI CCNGG 1 cut(s) 136
BpiI GAAGAC 1 cut(s) 142
BsaBI GATNNNNATC 1 cut(s) 365
BsaJI CCNNGG 2 cut(s) 134, 497
Bsc4I CCNNNNNNNGG 1 cut(s) 426
Bse118I RCCGGY 1 cut(s) 350
Bse21I CCTNAGG 1 cut(s) 236
Bse3DI GCAATG 1 cut(s) 294
Bse8I GATNNNNATC 1 cut(s) 365
BseBI CCWGG 1 cut(s) 136
BseDI CCNNGG 2 cut(s) 134, 497
BseGI GGATG 3 cut(s) 14, 29, 460
BseJI GATNNNNATC 1 cut(s) 365
BseLI CCNNNNNNNGG 1 cut(s) 426
BseMI GCAATG 1 cut(s) 294
BseMII CTCAG 4 cut(s) 88, 102, 225, 250
BseRI GAGGAG 1 cut(s) 71
BseXI GCAGC 2 cut(s) 296, 403
Bsh1285I CGRYCG 1 cut(s) 269
BshFI GGCC 1 cut(s) 98
BshNI GGYRCC 1 cut(s) 347
BsiEI CGRYCG 1 cut(s) 269
BsiSI CCGG 2 cut(s) 296, 351
BslI CCNNNNNNNGG 1 cut(s) 426
BsmAI GTCTC 1 cut(s) 53
BsmI GAATGC 2 cut(s) 185, 198
BsnI GGCC 1 cut(s) 98
Bsp143I GATC 3 cut(s) 266, 366, 501
BspACI CCGC 1 cut(s) 183
BspANI GGCC 1 cut(s) 98
BspCNI CTCAG 4 cut(s) 87, 101, 224, 249
BspLI GGNNCC 1 cut(s) 349
BspPI GGATC 1 cut(s) 509
BspT107I GGYRCC 1 cut(s) 347
BspTI CTTAAG 1 cut(s) 373
BsrDI GCAATG 1 cut(s) 294
BsrFI RCCGGY 1 cut(s) 350
BssAI RCCGGY 1 cut(s) 350
BssECI CCNNGG 2 cut(s) 134, 497
BssMI GATC 3 cut(s) 266, 366, 501
BssSI CACGAG 1 cut(s) 308
BssT1I CCWWGG 1 cut(s) 497
Bst2BI CACGAG 1 cut(s) 308
Bst2UI CCWGG 1 cut(s) 136
Bst4CI ACNGT 2 cut(s) 64, 341
BstAFI CTTAAG 1 cut(s) 373
BstC8I GCNNGC 1 cut(s) 100
BstDEI CTNAG 4 cut(s) 74, 88, 211, 236
BstEII GGTNACC 1 cut(s) 353
BstF5I GGATG 3 cut(s) 14, 29, 460
BstKTI GATC 3 cut(s) 269, 369, 504
BstMAI GTCTC 1 cut(s) 53
BstMBI GATC 3 cut(s) 266, 366, 501
BstMCI CGRYCG 1 cut(s) 269
BstNI CCWGG 1 cut(s) 136
BstPI GGTNACC 1 cut(s) 353
BstSCI CCNGG 1 cut(s) 134
BstV1I GCAGC 2 cut(s) 296, 403
BstV2I GAAGAC 1 cut(s) 142
BstXI CCANNNNNNTGG 1 cut(s) 172
Bsu36I CCTNAGG 1 cut(s) 236
BsuRI GGCC 1 cut(s) 98
BtgZI GCGATG 1 cut(s) 314
BtsCI GGATG 3 cut(s) 14, 29, 460
Cac8I GCNNGC 1 cut(s) 100
CaiI CAGNNNCTG 1 cut(s) 364
Cfr10I RCCGGY 1 cut(s) 350
Csp6I GTAC 3 cut(s) 130, 160, 316
CviQI GTAC 3 cut(s) 130, 160, 316
DdeI CTNAG 4 cut(s) 74, 88, 211, 236
DpnI GATC 3 cut(s) 268, 368, 503
DpnII GATC 3 cut(s) 266, 366, 501
DraIII CACNNNGTG 1 cut(s) 117
Eco130I CCWWGG 1 cut(s) 497
Eco81I CCTNAGG 1 cut(s) 236
Eco91I GGTNACC 1 cut(s) 353
EcoO65I GGTNACC 1 cut(s) 353
EcoRI GAATTC 1 cut(s) 215
EcoRII CCWGG 1 cut(s) 134
EcoT14I CCWWGG 1 cut(s) 497
ErhI CCWWGG 1 cut(s) 497
FaiI YATR 1 cut(s) 335
Fnu4HI GCNGC 2 cut(s) 285, 417
FokI GGATG 2 cut(s) 16, 467
Fsp4HI GCNGC 2 cut(s) 285, 417
GluI GCNGC 2 cut(s) 285, 417
HaeIII GGCC 1 cut(s) 98
HapII CCGG 2 cut(s) 296, 351
HinfI GANTC 1 cut(s) 461
HpaII CCGG 2 cut(s) 296, 351
HphI GGTGA 1 cut(s) 470
Hpy166II GTNNAC 1 cut(s) 331
Hpy188I TCNGA 2 cut(s) 127, 214
Hpy8I GTNNAC 1 cut(s) 331
HpyAV CCTTC 1 cut(s) 493
HpyCH4III ACNGT 2 cut(s) 64, 341
HpyCH4V TGCA 2 cut(s) 4, 102
HpyF3I CTNAG 4 cut(s) 74, 88, 211, 236
Kzo9I GATC 3 cut(s) 266, 366, 501
Lsp1109I GCAGC 2 cut(s) 296, 403
MaeIII GTNAC 2 cut(s) 303, 353
MalI GATC 3 cut(s) 268, 368, 503
MboI GATC 3 cut(s) 266, 366, 501
MboII GAAGA 3 cut(s) 142, 145, 197
MluCI AATT 2 cut(s) 215, 434
MnlI CCTC 7 cut(s) 49, 83, 179, 245, 250, 303, 499
MseI TTAA 1 cut(s) 374
MslI CAYNNNNRTG 1 cut(s) 310
MspCI CTTAAG 1 cut(s) 373
MspI CCGG 2 cut(s) 296, 351
MspR9I CCNGG 1 cut(s) 136
Mva1269I GAATGC 2 cut(s) 185, 198
MvaI CCWGG 1 cut(s) 136
NdeII GATC 3 cut(s) 266, 366, 501
NlaIV GGNNCC 1 cut(s) 349
NmeAIII GCCGAG 1 cut(s) 409
NmuCI GTSAC 1 cut(s) 303
OliI CACNNNNGTG 1 cut(s) 310
PctI GAATGC 2 cut(s) 185, 198
PfeI GAWTC 1 cut(s) 461
PflMI CCANNNNNTGG 1 cut(s) 426
PkrI GCNGC 2 cut(s) 286, 418
Ple19I CGATCG 1 cut(s) 269
Psp6I CCWGG 1 cut(s) 134
PspEI GGTNACC 1 cut(s) 353
PspGI CCWGG 1 cut(s) 134
PspN4I GGNNCC 1 cut(s) 349
PstNI CAGNNNCTG 1 cut(s) 364
PvuI CGATCG 1 cut(s) 269
RsaI GTAC 3 cut(s) 131, 161, 317
RsaNI GTAC 3 cut(s) 130, 160, 316
RseI CAYNNNNRTG 1 cut(s) 310
SaqAI TTAA 1 cut(s) 374
SatI GCNGC 2 cut(s) 285, 417
Sau3AI GATC 3 cut(s) 266, 366, 501
ScaI AGTACT 1 cut(s) 161
ScrFI CCNGG 1 cut(s) 136
SetI ASST 5 cut(s) 108, 237, 265, 380, 398
SmiMI CAYNNNNRTG 1 cut(s) 310
SmlI CTYRAG 1 cut(s) 373
SmoI CTYRAG 1 cut(s) 373
Sse9I AATT 2 cut(s) 215, 434
SsiI CCGC 1 cut(s) 183
StyD4I CCNGG 1 cut(s) 134
StyI CCWWGG 1 cut(s) 497
TaaI ACNGT 2 cut(s) 64, 341
TaqI TCGA 4 cut(s) 156, 168, 265, 504
TasI AATT 2 cut(s) 215, 434
TatI WGTACW 1 cut(s) 159
TfiI GAWTC 1 cut(s) 461
Tru1I TTAA 1 cut(s) 374
Tru9I TTAA 1 cut(s) 374
TseFI GTSAC 1 cut(s) 303
TseI GCWGC 2 cut(s) 284, 416
Tsp45I GTSAC 1 cut(s) 303
TspDTI ATGAA 1 cut(s) 69
TspGWI ACGGA 1 cut(s) 22
Van91I CCANNNNNTGG 1 cut(s) 426
Vha464I CTTAAG 1 cut(s) 373
XapI RAATTY 1 cut(s) 215
XcmI CCANNNNNNNNNTGG 1 cut(s) 448
ZrmI AGTACT 1 cut(s) 161
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.