Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6A

Orthogroup ID

OG0011756

Physical Location & Seq

Genomic Coordinates Forward (+)

63283532 .. 63284773

Gene Structure 1242 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6AG445700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1242 bp

ATGATGACTCGGAAGAGAAAGTCCCAAGAAGAGAATTGCATTTCAAGCACATTTTTGATGGATGAGCTTAATGAAGACCTTCTTGAAGGGGTCCTGTCTAGGCTACCAATCTCTGCATTTTTCCGTCTTTCTTCGGTTTGCAAGAGATGGAAATCAGTTGCAAACTCTTCAAGTTTCAAGCTTGCCTGCTCCCAAATCCCTTCTCGGGATCCATGGTTCTTCATGGTCGACTCTCATCTCAATCGATCCATTGTGTTTGACTCTGCTGAAAAAAACTGGAAGAAACTTAACCATCCACCTCTCCTCCAGACAAACTCCAACTGCAATTCCATGCCTGTTTCAGCCTCTGGTGGCTTTATCTGTTTCCGAAATTCATATGGCAACTTTGTCGTGTGCAATCCTGTGACAGGGTCCTGCAATGAACAACCTCCACTCTATCCAGCCCTACAAAGCCTCACATTCCATGCCATTGTGATGAGCTCATGTCCCAACAAGCATGACCAGTCCTCTTACAGGCTTGTAGTTGTCTTTGGTGAGCTTCCGAAGCTGTCATTTAGAGTGTACAACTCAAGCAGCGGTTGCTGGGAAGAAGAGATCACCTTGTGCAAGAAGTTCAATGATGATGATAATTCAAAGGAACTTGATGATTCTACAGACTTTGACTCGAATGATGACAGTGCTGTTTACTTCCTCAGCAAGGCTGGAAATGTAGTGGCAACCAATATGCAAAGAAGCCCATCTAAGCAATACTCATCTGTTATCACTAACAAAGATGGTGAGGAAATAGTCCATTTCCTTAGCTCCTCGGGCTCAATCGTGGCTTGCAATCTGACCTCCAAGTGCTTCATTGAGTACCCGAGGCTACTCCCCGTTTTCTATGAGTACTCCATTGACTTGGTGGAGTGTGGAGGCAGGATGCTGGTGGTTCTGTTGTCGGAGTTCTTTGAAAGTGCGAGCCTTAGGGTTTGGTGTTATGATGAGGATGTTCGAAGTTGGCAACAAATTGCAGCAATGCCACCAGCAATGTCCCATGAGTGGTATGGCAAGAATGTGGATATCAACTGTGTCGGGGCAGGTGACCAGATATTGATTTGCTTAAGCTCAGCAGAGATTTCTAGCTGTGTTATGTGTGACTTGGCTGCTAATGAATGGGTTGAATTGCCCAAATGCTATGTGGATGGTGAAGCCATCAAGTTTATGTCTGCTTTCTCATTCCAGCCAAGGATTGAGGCTTCTCTATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004842 GO:0006464 GO:0006508 GO:0006511 GO:0006807 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009987 GO:0010498 GO:0016567 GO:0016740 GO:0019538 GO:0019787 GO:0019941 GO:0030163 GO:0031146 GO:0032446 GO:0036211 GO:0043161 GO:0043170 GO:0043412 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0051603 GO:0070647 GO:0071704 GO:0140096 GO:1901564 GO:1901565 GO:1901575

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

F-box

Protein Analysis

413

Amino Acids

46.38

Weight (kDa)

5.03

Isoelectric Point (pI)

56.88

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
F-box	PF00646	21 - 60	1.2e-08	F-box domain
Beta-prop_KIB1-4	PF03478	110 - 338	8.9e-10	KIB1-4 beta-propeller

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0011756)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G33160 AT4G33160
fragaria_vesca	FvH4_2g37090
malus_domestica	MD08G1047200.v1.1 MD15G1046700.v1.1
prunus_persica	Prupe.1G401100_v2.0.a1
pyrus_communis	pycom08g03960 pycom15g04440 pycom15g04450
rosa_chinensis	RchiOBHm_Chr6g0304701
rosa_multiflora	Rmu_co8288461.1_g000001 Rmu_sc0003341.1_g000008
rosa_roxburghii	Rroxscaffold_7G00163580
rosa_rugosa	Rorug06G0333600
rosa_samantha	Rh6AG445700 Rh6BG456200 Rh6CG458600 Rh6DG445800
rosa_wichuraiana	Rw6G038760

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	1064
Acc36I	ACCTGC	1 cut(s)	1064
AccI	GTMKAC	1 cut(s)	228
AciI	CCGC	1 cut(s)	576
AclWI	GGATC	3 cut(s)	203, 216, 240
AcsI	RAATTY	1 cut(s)	370
AdeI	CACNNNGTG	1 cut(s)	603
AfaI	GTAC	3 cut(s)	563, 854, 884
AfiI	CCNNNNNNNGG	5 cut(s)	205, 407, 513, 697, 1035
AflII	CTTAAG	1 cut(s)	1096
AgsI	TTSAA	8 cut(s)	45, 86, 171, 178, 616, 633, 947, 1157
AloI	GAACNNNNNNTCC	2 cut(s)	200, 232
AluBI	AGCT	8 cut(s)	67, 181, 480, 538, 547, 801, 1101, 1119
AluI	AGCT	8 cut(s)	67, 181, 480, 538, 547, 801, 1101, 1119
Alw21I	GWGCWC	1 cut(s)	482
AlwI	GGATC	3 cut(s)	203, 216, 240
AlwNI	CAGNNNCTG	1 cut(s)	347
Ama87I	CYCGRG	3 cut(s)	204, 805, 856
ApeKI	GCWGC	3 cut(s)	573, 1007, 1139
ApoI	RAATTY	1 cut(s)	370
Asp700I	GAANNNNTTC	1 cut(s)	78
AspS9I	GGNCC	2 cut(s)	91, 411
AsuHPI	GGTGA	5 cut(s)	545, 589, 788, 1088, 1193
AsuII	TTCGAA	1 cut(s)	988
AvaI	CYCGRG	3 cut(s)	204, 805, 856
AvaII	GGWCC	2 cut(s)	91, 411
AxyI	CCTNAGG	1 cut(s)	959
BamHI	GGATCC	1 cut(s)	208
BanII	GRGCYC	2 cut(s)	482, 812
BbsI	GAAGAC	1 cut(s)	81
Bbv12I	GWGCWC	1 cut(s)	482
BbvCI	CCTCAGC	1 cut(s)	692
BbvI	GCAGC	3 cut(s)	585, 1019, 1126
BccI	CCATC	7 cut(s)	52, 141, 300, 745, 767, 1172, 1196
BcgI	CGANNNNNNTGC	2 cut(s)	370, 404
BfaI	CTAG	2 cut(s)	99, 1116
BfmI	CTRYAG	1 cut(s)	651
BfrI	CTTAAG	1 cut(s)	1096
BfuAI	ACCTGC	1 cut(s)	1064
BisI	GCNGC	3 cut(s)	574, 1008, 1140
BlpI	GCTNAGC	1 cut(s)	1102
BlsI	GCNGC	3 cut(s)	575, 1009, 1141
BmcAI	AGTACT	1 cut(s)	884
Bme18I	GGWCC	2 cut(s)	91, 411
BmeT110I	CYCGRG	3 cut(s)	204, 805, 856
BmgT120I	GGNCC	2 cut(s)	91, 411
BmiI	GGNNCC	3 cut(s)	92, 210, 412
BmsI	GCATC	1 cut(s)	906
BpiI	GAAGAC	1 cut(s)	81
BpmI	CTGGAG	1 cut(s)	290
Bpu10I	CCTNAGC	2 cut(s)	692, 797
Bpu1102I	GCTNAGC	1 cut(s)	1102
Bpu14I	TTCGAA	1 cut(s)	988
BpuEI	CTTGAG	1 cut(s)	553
Bsa29I	ATCGAT	1 cut(s)	244
BsaBI	GATNNNNATC	1 cut(s)	151
BsaJI	CCNNGG	4 cut(s)	212, 804, 857, 1220
BsaXI	ACNNNNNCTCC	2 cut(s)	288, 318
Bsc4I	CCNNNNNNNGG	5 cut(s)	205, 407, 513, 697, 1035
Bse1I	ACTGG	2 cut(s)	281, 502
Bse21I	CCTNAGG	1 cut(s)	959
Bse3DI	GCAATG	3 cut(s)	424, 1017, 1029
Bse8I	GATNNNNATC	1 cut(s)	151
BseCI	ATCGAT	1 cut(s)	244
BseDI	CCNNGG	4 cut(s)	212, 804, 857, 1220
BseGI	GGATG	5 cut(s)	67, 292, 921, 988, 1183
BseJI	GATNNNNATC	1 cut(s)	151
BseLI	CCNNNNNNNGG	5 cut(s)	205, 407, 513, 697, 1035
BseMI	GCAATG	3 cut(s)	424, 1017, 1029
BseMII	CTCAG	2 cut(s)	706, 1116
BseNI	ACTGG	2 cut(s)	281, 502
BseRI	GAGGAG	2 cut(s)	293, 793
BseXI	GCAGC	3 cut(s)	585, 1019, 1126
BseYI	CCCAGC	1 cut(s)	582
BshVI	ATCGAT	1 cut(s)	244
BsiHKAI	GWGCWC	1 cut(s)	482
BsiHKCI	CYCGRG	3 cut(s)	204, 805, 856
BslFI	GGGAC	3 cut(s)	7, 471, 1012
BslI	CCNNNNNNNGG	5 cut(s)	205, 407, 513, 697, 1035
BsmFI	GGGAC	3 cut(s)	7, 471, 1012
BsoBI	CYCGRG	3 cut(s)	204, 805, 856
Bsp119I	TTCGAA	1 cut(s)	988
Bsp1286I	GDGCHC	2 cut(s)	482, 812
Bsp1407I	TGTACA	1 cut(s)	561
Bsp143I	GATC	3 cut(s)	208, 245, 594
Bsp1720I	GCTNAGC	1 cut(s)	1102
Bsp19I	CCATGG	1 cut(s)	212
BspACI	CCGC	1 cut(s)	576
BspCNI	CTCAG	2 cut(s)	705, 1115
BspDI	ATCGAT	1 cut(s)	244
BspLI	GGNNCC	3 cut(s)	92, 210, 412
BspMI	ACCTGC	1 cut(s)	1064
BspPI	GGATC	3 cut(s)	203, 216, 240
BspT104I	TTCGAA	1 cut(s)	988
BspTI	CTTAAG	1 cut(s)	1096
BsrDI	GCAATG	3 cut(s)	424, 1017, 1029
BsrGI	TGTACA	1 cut(s)	561
BsrI	ACTGG	2 cut(s)	281, 502
BssECI	CCNNGG	4 cut(s)	212, 804, 857, 1220
BssMI	GATC	3 cut(s)	208, 245, 594
BssT1I	CCWWGG	2 cut(s)	212, 1220
Bst4CI	ACNGT	2 cut(s)	677, 1064
Bst6I	CTCTTC	4 cut(s)	8, 24, 172, 585
BstAFI	CTTAAG	1 cut(s)	1096
BstAPI	GCANNNNNTGC	1 cut(s)	579
BstAUI	TGTACA	1 cut(s)	561
BstBI	TTCGAA	1 cut(s)	988
BstC8I	GCNNGC	4 cut(s)	183, 187, 823, 955
BstDEI	CTNAG	5 cut(s)	692, 741, 797, 959, 1102
BstDSI	CCRYGG	1 cut(s)	212
BstEII	GGTNACC	1 cut(s)	1076
BstENI	CCTNNNNNAGG	3 cut(s)	405, 511, 695
BstF5I	GGATG	5 cut(s)	67, 292, 921, 988, 1183
BstKTI	GATC	3 cut(s)	211, 248, 597
BstMBI	GATC	3 cut(s)	208, 245, 594
BstMWI	GCNNNNNNNGC	4 cut(s)	45, 544, 579, 807
BstPI	GGTNACC	1 cut(s)	1076
BstSFI	CTRYAG	1 cut(s)	651
BstV1I	GCAGC	3 cut(s)	585, 1019, 1126
BstV2I	GAAGAC	1 cut(s)	81
BstX2I	RGATCY	1 cut(s)	208
BstXI	CCANNNNNNTGG	1 cut(s)	895
BstYI	RGATCY	1 cut(s)	208
Bsu15I	ATCGAT	1 cut(s)	244
Bsu36I	CCTNAGG	1 cut(s)	959
BsuTUI	ATCGAT	1 cut(s)	244
BtgI	CCRYGG	1 cut(s)	212
BtsCI	GGATG	5 cut(s)	67, 292, 921, 988, 1183
BtsIMutI	CAGTG	1 cut(s)	682
BveI	ACCTGC	1 cut(s)	1064
Cac8I	GCNNGC	4 cut(s)	183, 187, 823, 955
CaiI	CAGNNNCTG	1 cut(s)	347
Cfr13I	GGNCC	2 cut(s)	91, 411
ClaI	ATCGAT	1 cut(s)	244
Csp6I	GTAC	3 cut(s)	562, 853, 883
CviAII	CATG	7 cut(s)	213, 223, 331, 464, 483, 497, 1031
CviQI	GTAC	3 cut(s)	562, 853, 883
DdeI	CTNAG	5 cut(s)	692, 741, 797, 959, 1102
DpnI	GATC	3 cut(s)	210, 247, 596
DpnII	GATC	3 cut(s)	208, 245, 594
DraIII	CACNNNGTG	1 cut(s)	603
Eam1104I	CTCTTC	4 cut(s)	8, 24, 172, 585
EarI	CTCTTC	4 cut(s)	8, 24, 172, 585
Ecl136II	GAGCTC	1 cut(s)	480
Eco130I	CCWWGG	2 cut(s)	212, 1220
Eco24I	GRGCYC	2 cut(s)	482, 812
Eco32I	GATATC	1 cut(s)	1057
Eco47I	GGWCC	2 cut(s)	91, 411
Eco53kI	GAGCTC	1 cut(s)	480
Eco81I	CCTNAGG	1 cut(s)	959
Eco88I	CYCGRG	3 cut(s)	204, 805, 856
Eco91I	GGTNACC	1 cut(s)	1076
EcoICRI	GAGCTC	1 cut(s)	480
EcoNI	CCTNNNNNAGG	3 cut(s)	405, 511, 695
EcoO109I	RGGNCCY	2 cut(s)	91, 411
EcoO65I	GGTNACC	1 cut(s)	1076
EcoRV	GATATC	1 cut(s)	1057
EcoT14I	CCWWGG	2 cut(s)	212, 1220
EcoT38I	GRGCYC	2 cut(s)	482, 812
ErhI	CCWWGG	2 cut(s)	212, 1220
FaeI	CATG	7 cut(s)	216, 226, 334, 467, 486, 500, 1034
FalI	AAGNNNNNCTT	2 cut(s)	66, 98
FaqI	GGGAC	3 cut(s)	7, 471, 1012
FatI	CATG	7 cut(s)	212, 222, 330, 463, 482, 496, 1030
FauNDI	CATATG	1 cut(s)	376
FblI	GTMKAC	1 cut(s)	228
Fnu4HI	GCNGC	3 cut(s)	574, 1008, 1140
FokI	GGATG	5 cut(s)	74, 279, 928, 995, 1190
FriOI	GRGCYC	2 cut(s)	482, 812
Fsp4HI	GCNGC	3 cut(s)	574, 1008, 1140
FspBI	CTAG	2 cut(s)	99, 1116
GluI	GCNGC	3 cut(s)	574, 1008, 1140
GsaI	CCCAGC	1 cut(s)	586
GsuI	CTGGAG	1 cut(s)	290
Hin1II	CATG	7 cut(s)	216, 226, 334, 467, 486, 500, 1034
HincII	GTYRAC	1 cut(s)	229
HindII	GTYRAC	1 cut(s)	229
HindIII	AAGCTT	1 cut(s)	179
HinfI	GANTC	5 cut(s)	7, 230, 260, 647, 662
HphI	GGTGA	5 cut(s)	545, 589, 788, 1088, 1193
Hpy166II	GTNNAC	3 cut(s)	229, 562, 685
Hpy188I	TCNGA	5 cut(s)	12, 368, 543, 831, 937
Hpy188III	TCNNGA	3 cut(s)	83, 206, 307
Hpy8I	GTNNAC	3 cut(s)	229, 562, 685
HpyAV	CCTTC	3 cut(s)	80, 89, 210
HpyCH4III	ACNGT	2 cut(s)	677, 1064
HpyF10VI	GCNNNNNNNGC	4 cut(s)	45, 544, 579, 807
HpyF3I	CTNAG	5 cut(s)	692, 741, 797, 959, 1102
Hsp92II	CATG	7 cut(s)	216, 226, 334, 467, 486, 500, 1034
Kzo9I	GATC	3 cut(s)	208, 245, 594
LmnI	GCTCC	2 cut(s)	194, 806
Lsp1109I	GCAGC	3 cut(s)	585, 1019, 1126
LweI	GCATC	1 cut(s)	906
MaeI	CTAG	2 cut(s)	99, 1116
MaeIII	GTNAC	3 cut(s)	403, 1076, 1130
MalI	GATC	3 cut(s)	210, 247, 596
MboI	GATC	3 cut(s)	208, 245, 594
MboII	GAAGA	9 cut(s)	25, 41, 86, 123, 159, 211, 292, 599, 602
MflI	RGATCY	1 cut(s)	208
MhlI	GDGCHC	2 cut(s)	482, 812
MluCI	AATT	6 cut(s)	34, 325, 370, 628, 1002, 1157
MlyI	GAGTC	3 cut(s)	224, 254, 656
MmeI	TCCRAC	2 cut(s)	342, 915
MroXI	GAANNNNTTC	1 cut(s)	78
MseI	TTAA	3 cut(s)	69, 288, 1097
MslI	CAYNNNNRTG	1 cut(s)	473
MspA1I	CMGCKG	1 cut(s)	576
MspCI	CTTAAG	1 cut(s)	1096
MwoI	GCNNNNNNNGC	4 cut(s)	45, 544, 579, 807
NcoI	CCATGG	1 cut(s)	212
NdeI	CATATG	1 cut(s)	376
NdeII	GATC	3 cut(s)	208, 245, 594
NlaIII	CATG	7 cut(s)	216, 226, 334, 467, 486, 500, 1034
NlaIV	GGNNCC	3 cut(s)	92, 210, 412
NmuCI	GTSAC	3 cut(s)	403, 1076, 1130
NspV	TTCGAA	1 cut(s)	988
PaqCI	CACCTGC	1 cut(s)	1064
PdmI	GAANNNNTTC	1 cut(s)	78
PfeI	GAWTC	1 cut(s)	647
PflFI	GACNNNGTC	1 cut(s)	409
PkrI	GCNGC	3 cut(s)	575, 1009, 1141
PleI	GAGTC	3 cut(s)	224, 254, 656
PpsI	GAGTC	3 cut(s)	224, 254, 656
PpuMI	RGGWCCY	2 cut(s)	91, 411
Psp124BI	GAGCTC	1 cut(s)	482
Psp5II	RGGWCCY	2 cut(s)	91, 411
PspEI	GGTNACC	1 cut(s)	1076
PspFI	CCCAGC	1 cut(s)	582
PspN4I	GGNNCC	3 cut(s)	92, 210, 412
PspPI	GGNCC	2 cut(s)	91, 411
PspPPI	RGGWCCY	2 cut(s)	91, 411
PstNI	CAGNNNCTG	1 cut(s)	347
PsuI	RGATCY	1 cut(s)	208
PsyI	GACNNNGTC	1 cut(s)	409
RsaI	GTAC	3 cut(s)	563, 854, 884
RsaNI	GTAC	3 cut(s)	562, 853, 883
RseI	CAYNNNNRTG	1 cut(s)	473
SacI	GAGCTC	1 cut(s)	482
SalI	GTCGAC	1 cut(s)	227
SaqAI	TTAA	3 cut(s)	69, 288, 1097
SatI	GCNGC	3 cut(s)	574, 1008, 1140
Sau3AI	GATC	3 cut(s)	208, 245, 594
Sau96I	GGNCC	2 cut(s)	91, 411
ScaI	AGTACT	1 cut(s)	884
SchI	GAGTC	3 cut(s)	224, 254, 656
SduI	GDGCHC	2 cut(s)	482, 812
SfaNI	GCATC	1 cut(s)	906
SfcI	CTRYAG	1 cut(s)	651
SfuI	TTCGAA	1 cut(s)	988
SinI	GGWCC	2 cut(s)	91, 411
SmiMI	CAYNNNNRTG	1 cut(s)	473
SmlI	CTYRAG	2 cut(s)	568, 1096
SmoI	CTYRAG	2 cut(s)	568, 1096
Sse9I	AATT	6 cut(s)	34, 325, 370, 628, 1002, 1157
SsiI	CCGC	1 cut(s)	576
SspMI	CTAG	2 cut(s)	99, 1116
SstI	GAGCTC	1 cut(s)	482
StyI	CCWWGG	2 cut(s)	212, 1220
TaaI	ACNGT	2 cut(s)	677, 1064
TaqI	TCGA	4 cut(s)	228, 244, 665, 988
TasI	AATT	6 cut(s)	34, 325, 370, 628, 1002, 1157
TatI	WGTACW	2 cut(s)	561, 882
TfiI	GAWTC	1 cut(s)	647
Tru1I	TTAA	3 cut(s)	69, 288, 1097
Tru9I	TTAA	3 cut(s)	69, 288, 1097
TscAI	CASTG	1 cut(s)	682
TseFI	GTSAC	3 cut(s)	403, 1076, 1130
TseI	GCWGC	3 cut(s)	573, 1007, 1139
Tsp45I	GTSAC	3 cut(s)	403, 1076, 1130
TspDTI	ATGAA	6 cut(s)	87, 211, 363, 435, 835, 1161
TspGWI	ACGGA	1 cut(s)	113
TspRI	CASTG	1 cut(s)	682
Tth111I	GACNNNGTC	1 cut(s)	409
Vha464I	CTTAAG	1 cut(s)	1096
VpaK11BI	GGWCC	2 cut(s)	91, 411
XagI	CCTNNNNNAGG	3 cut(s)	405, 511, 695
XapI	RAATTY	1 cut(s)	370
XcmI	CCANNNNNNNNNTGG	3 cut(s)	895, 1037, 1171
XmiI	GTMKAC	1 cut(s)	228
XmnI	GAANNNNTTC	1 cut(s)	78
XspI	CTAG	2 cut(s)	99, 1116
ZrmI	AGTACT	1 cut(s)	884

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.