MD15G1046700.v1.1

F-box only protein

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr15
Physical Location & Seq
Forward (+)
3216282 .. 3219076
2795 bp
Loading structure...
UTR
Exon/CDS
Intron
MD15G1046700.v1.1.491

Sequence Viewer

Length: 1248 bp
ATGGAGCACAACAATTCCCCAGCTTTTAAGATGAATCGGAAGAGAAAATCCCAAGAACAAGATGATGGCATTTCAAACACATTTTATATGGATGAGGTTAACGAAGACCTTCTTGAAAGGGTACTTTCGAGGCTACCAACATCTGCATTCTTCCGCCTTACTTCGGTATGCAAAAGATGGAAATCAGTTGCATATTCTCCCAGTTTCAAGCTTGCCTGCTCTCAGATTCCTTCTCGGGATCCTTGGTTTTTCATGGTCGATCCCCTTCTTAACCGGTCAATTGTCTTTGACTCCGCTGAAAGAAGCTGGAAGAAACTCAATCATCCGCCTCTCCTCCAGACAAAATCCAACTGCAATTCCATGCCTGTTTCAGCTTCTGGTGGCTTGATCTGTTTCCGCAATTCACAGGGCAACTTCATTGTATCCAACCCTGTGACAGGGGTTTGCAATGAACACCCTCCGCTGGATCCATCCTTACAAAATCTCACATTCCATGCCATTGTGATGAGCTCAAGTCCCAAGTATGATCAATCATCTTACAAGCTTGTTGTTGTCTTTGGCGAGCTTCCAAATTTGTCCTTCCGAGTGTATAACTCAAGCACTGCCTGTTGGGAAGAAGAGACTGCCTTGCGTAAAAACTTCGAGGATGATGATTCTACAGAATCTGACTCAACCGATGACAGTGCTGTTTACTTCCTTAGCAGGGCTGGAAATGTAGTGGCAACCAACATGCAAAGAAGCCCATCCAAGCAATACTCATCCGTAATCACTTCCAAAAAGGGCGAGGAGACAGTCTATTTCCTCAGCTCATCAGGCTCAGTTGTGGCCTGCAACCTGACCACCAAGTGCTTCTCCGAGTACCCCAGGCTACTCCCTGTCTTCTTCGAGTACTCCATCGACTTGGTAGAATGCGGAGGCAGAATGCTGGTGGTTCTTCTCTCAGAATTCTTTGAAAGCGCGAACCTCAGGGTGTGGTGCTACGATGAGGAAGCTCGATCATGGCAACACATCGCAGCAATGCCTCCAGCGATGTCACACGAGTGGTATGGCAAGAATGTGGACATAAACTGTGTTGGTGCCGGTAACCAGATACTGATCTGCTTAAGCTCTGCCGAGATTTCGAGGTGTGTTCTGTGTGATTTGGCTGCCAATGATTGGATTGAATTGCCCAAATGTTTTGTGGATGGTGAATCCATCAAGTTCTTGTCTGCCTTCTCATTTGAGCCAAGGATCGAGGCTTCTGTGTGA

Protein Analysis

416

Amino Acids

46.71

Weight (kDa)

5.26

Isoelectric Point (pI)

60.62

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
F-box PF00646 35 - 70 2.2e-07 F-box domain
Beta-prop_KIB1-4 PF03478 120 - 340 3.8e-10 KIB1-4 beta-propeller
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

Orthologous Genes (Group: OG0011756)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 1076
AccB7I CCANNNNNTGG 1 cut(s) 1155
AccII CGCG 1 cut(s) 959
AciI CCGC 6 cut(s) 154, 294, 326, 397, 461, 912
AclWI GGATC 6 cut(s) 233, 246, 254, 461, 474, 1238
AcsI RAATTY 2 cut(s) 571, 944
AdeI CACNNNGTG 1 cut(s) 846
AfaI GTAC 3 cut(s) 123, 860, 890
AfiI CCNNNNNNNGG 5 cut(s) 163, 437, 463, 703, 1155
AflII CTTAAG 1 cut(s) 1102
AgeI ACCGGT 1 cut(s) 273
AgsI TTSAA 5 cut(s) 75, 116, 208, 953, 1163
AjnI CCWGG 1 cut(s) 863
AleI CACNNNNGTG 1 cut(s) 1039
Alw21I GWGCWC 2 cut(s) 9, 512
Alw26I GTCTC 2 cut(s) 614, 782
AlwI GGATC 6 cut(s) 233, 246, 254, 461, 474, 1238
AlwNI CAGNNNCTG 3 cut(s) 377, 665, 1093
Ama87I CYCGRG 1 cut(s) 234
AoxI GGCC 1 cut(s) 825
ApeKI GCWGC 2 cut(s) 1013, 1145
ApoI RAATTY 2 cut(s) 571, 944
AsiGI ACCGGT 1 cut(s) 273
Asp700I GAANNNNTTC 1 cut(s) 108
AspLEI GCGC 1 cut(s) 959
AsuHPI GGTGA 1 cut(s) 1199
AvaI CYCGRG 1 cut(s) 234
AxyI CCTNAGG 1 cut(s) 965
BamHI GGATCC 2 cut(s) 238, 466
BanI GGYRCC 1 cut(s) 1076
BanII GRGCYC 1 cut(s) 512
BauI CACGAG 1 cut(s) 1037
BbsI GAAGAC 2 cut(s) 111, 871
Bbv12I GWGCWC 2 cut(s) 9, 512
BbvCI CCTCAGC 1 cut(s) 803
BbvI GCAGC 2 cut(s) 1025, 1132
BccI CCATC 7 cut(s) 59, 171, 478, 751, 902, 1178, 1202
BcgI CGANNNNNNTGC 2 cut(s) 665, 699
BciT130I CCWGG 1 cut(s) 865
BciVI GTATCC 1 cut(s) 433
BclI TGATCA 1 cut(s) 526
BcoDI GTCTC 2 cut(s) 614, 782
BfmI CTRYAG 1 cut(s) 657
BfrI CTTAAG 1 cut(s) 1102
BfuI GTATCC 1 cut(s) 433
BisI GCNGC 2 cut(s) 1014, 1146
BlsI GCNGC 2 cut(s) 1015, 1147
BmcAI AGTACT 1 cut(s) 890
Bme1390I CCNGG 1 cut(s) 865
BmeT110I CYCGRG 1 cut(s) 234
BmiI GGNNCC 3 cut(s) 240, 468, 1078
BmrFI CCNGG 1 cut(s) 865
BmrI ACTGGG 1 cut(s) 195
BmuI ACTGGG 1 cut(s) 195
BpiI GAAGAC 2 cut(s) 111, 871
BpmI CTGGAG 2 cut(s) 320, 1008
Bpu10I CCTNAGC 2 cut(s) 698, 803
BpuEI CTTGAG 2 cut(s) 496, 580
BsaBI GATNNNNATC 2 cut(s) 181, 1094
BsaJI CCNNGG 3 cut(s) 242, 863, 1226
BsaWI WCCGGW 1 cut(s) 273
Bsc4I CCNNNNNNNGG 5 cut(s) 163, 437, 463, 703, 1155
Bse118I RCCGGY 2 cut(s) 273, 1079
Bse1I ACTGG 1 cut(s) 201
Bse21I CCTNAGG 1 cut(s) 965
Bse3DI GCAATG 2 cut(s) 454, 1023
Bse8I GATNNNNATC 2 cut(s) 181, 1094
BseBI CCWGG 1 cut(s) 865
BseDI CCNNGG 3 cut(s) 242, 863, 1226
BseGI GGATG 7 cut(s) 97, 322, 470, 652, 743, 758, 1189
BseJI GATNNNNATC 2 cut(s) 181, 1094
BseLI CCNNNNNNNGG 5 cut(s) 163, 437, 463, 703, 1155
BseMI GCAATG 2 cut(s) 454, 1023
BseMII CTCAG 5 cut(s) 236, 817, 831, 954, 979
BseNI ACTGG 1 cut(s) 201
BseRI GAGGAG 2 cut(s) 323, 800
BseXI GCAGC 2 cut(s) 1025, 1132
BseYI CCCAGC 1 cut(s) 19
Bsh1236I CGCG 1 cut(s) 959
BshFI GGCC 1 cut(s) 827
BshNI GGYRCC 1 cut(s) 1076
BshTI ACCGGT 1 cut(s) 273
BsiHKAI GWGCWC 2 cut(s) 9, 512
BsiHKCI CYCGRG 1 cut(s) 234
BsiSI CCGG 2 cut(s) 274, 1080
BslFI GGGAC 1 cut(s) 501
BslI CCNNNNNNNGG 5 cut(s) 163, 437, 463, 703, 1155
BsmAI GTCTC 2 cut(s) 614, 782
BsmFI GGGAC 1 cut(s) 501
BsmI GAATGC 3 cut(s) 146, 914, 927
BsnI GGCC 1 cut(s) 827
BsoBI CYCGRG 1 cut(s) 234
Bsp1286I GDGCHC 2 cut(s) 9, 512
Bsp143I GATC 8 cut(s) 238, 259, 387, 466, 526, 995, 1095, 1230
BspACI CCGC 6 cut(s) 154, 294, 326, 397, 461, 912
BspANI GGCC 1 cut(s) 827
BspCNI CTCAG 5 cut(s) 235, 816, 830, 953, 978
BspFNI CGCG 1 cut(s) 959
BspLI GGNNCC 3 cut(s) 240, 468, 1078
BspPI GGATC 6 cut(s) 233, 246, 254, 461, 474, 1238
BspT107I GGYRCC 1 cut(s) 1076
BspTI CTTAAG 1 cut(s) 1102
BsrDI GCAATG 2 cut(s) 454, 1023
BsrFI RCCGGY 2 cut(s) 273, 1079
BsrI ACTGG 1 cut(s) 201
BssAI RCCGGY 2 cut(s) 273, 1079
BssECI CCNNGG 3 cut(s) 242, 863, 1226
BssMI GATC 8 cut(s) 238, 259, 387, 466, 526, 995, 1095, 1230
BssSI CACGAG 1 cut(s) 1037
BssT1I CCWWGG 2 cut(s) 242, 1226
Bst2BI CACGAG 1 cut(s) 1037
Bst2UI CCWGG 1 cut(s) 865
Bst4CI ACNGT 3 cut(s) 683, 793, 1070
Bst6I CTCTTC 2 cut(s) 35, 612
BstAFI CTTAAG 1 cut(s) 1102
BstC8I GCNNGC 4 cut(s) 213, 217, 563, 829
BstDEI CTNAG 6 cut(s) 222, 698, 803, 817, 940, 965
BstEII GGTNACC 1 cut(s) 1082
BstENI CCTNNNNNAGG 1 cut(s) 435
BstF5I GGATG 7 cut(s) 97, 322, 470, 652, 743, 758, 1189
BstFNI CGCG 1 cut(s) 959
BstHHI GCGC 1 cut(s) 959
BstKTI GATC 8 cut(s) 241, 262, 390, 469, 529, 998, 1098, 1233
BstMAI GTCTC 2 cut(s) 614, 782
BstMBI GATC 8 cut(s) 238, 259, 387, 466, 526, 995, 1095, 1230
BstMWI GCNNNNNNNGC 1 cut(s) 813
BstNI CCWGG 1 cut(s) 865
BstNSI RCATGY 1 cut(s) 733
BstPI GGTNACC 1 cut(s) 1082
BstSCI CCNGG 1 cut(s) 863
BstSFI CTRYAG 1 cut(s) 657
BstUI CGCG 1 cut(s) 959
BstV1I GCAGC 2 cut(s) 1025, 1132
BstV2I GAAGAC 2 cut(s) 111, 871
BstX2I RGATCY 2 cut(s) 238, 466
BstXI CCANNNNNNTGG 1 cut(s) 901
BstYI RGATCY 2 cut(s) 238, 466
Bsu36I CCTNAGG 1 cut(s) 965
BsuI GTATCC 1 cut(s) 433
BsuRI GGCC 1 cut(s) 827
BtgZI GCGATG 2 cut(s) 994, 1043
BtsCI GGATG 7 cut(s) 97, 322, 470, 652, 743, 758, 1189
BtsI GCAGTG 1 cut(s) 600
BtsIMutI CAGTG 2 cut(s) 600, 688
Cac8I GCNNGC 4 cut(s) 213, 217, 563, 829
CaiI CAGNNNCTG 3 cut(s) 377, 665, 1093
CfoI GCGC 1 cut(s) 959
Cfr10I RCCGGY 2 cut(s) 273, 1079
Csp6I GTAC 3 cut(s) 122, 859, 889
CspAI ACCGGT 1 cut(s) 273
CviAII CATG 5 cut(s) 253, 361, 494, 730, 999
CviQI GTAC 3 cut(s) 122, 859, 889
DdeI CTNAG 6 cut(s) 222, 698, 803, 817, 940, 965
DpnI GATC 8 cut(s) 240, 261, 389, 468, 528, 997, 1097, 1232
DpnII GATC 8 cut(s) 238, 259, 387, 466, 526, 995, 1095, 1230
DraIII CACNNNGTG 1 cut(s) 846
Eam1104I CTCTTC 2 cut(s) 35, 612
EarI CTCTTC 2 cut(s) 35, 612
EciI GGCGGA 2 cut(s) 143, 315
Ecl136II GAGCTC 1 cut(s) 510
Eco130I CCWWGG 2 cut(s) 242, 1226
Eco24I GRGCYC 1 cut(s) 512
Eco53kI GAGCTC 1 cut(s) 510
Eco81I CCTNAGG 1 cut(s) 965
Eco88I CYCGRG 1 cut(s) 234
Eco91I GGTNACC 1 cut(s) 1082
EcoICRI GAGCTC 1 cut(s) 510
EcoNI CCTNNNNNAGG 1 cut(s) 435
EcoO65I GGTNACC 1 cut(s) 1082
EcoRI GAATTC 1 cut(s) 944
EcoRII CCWGG 1 cut(s) 863
EcoT14I CCWWGG 2 cut(s) 242, 1226
EcoT38I GRGCYC 1 cut(s) 512
ErhI CCWWGG 2 cut(s) 242, 1226
FaeI CATG 5 cut(s) 256, 364, 497, 733, 1002
FalI AAGNNNNNCTT 2 cut(s) 96, 128
FaqI GGGAC 1 cut(s) 501
FatI CATG 5 cut(s) 252, 360, 493, 729, 998
FbaI TGATCA 1 cut(s) 526
Fnu4HI GCNGC 2 cut(s) 1014, 1146
FokI GGATG 7 cut(s) 104, 309, 457, 659, 730, 745, 1196
FriOI GRGCYC 1 cut(s) 512
Fsp4HI GCNGC 2 cut(s) 1014, 1146
GlaI GCGC 1 cut(s) 958
GluI GCNGC 2 cut(s) 1014, 1146
GsaI CCCAGC 1 cut(s) 23
GsuI CTGGAG 2 cut(s) 320, 1008
HaeIII GGCC 1 cut(s) 827
HapII CCGG 2 cut(s) 274, 1080
HhaI GCGC 1 cut(s) 959
Hin1II CATG 5 cut(s) 256, 364, 497, 733, 1002
Hin6I GCGC 1 cut(s) 957
HinP1I GCGC 1 cut(s) 957
HincII GTYRAC 1 cut(s) 100
HindII GTYRAC 1 cut(s) 100
HindIII AAGCTT 2 cut(s) 209, 542
HinfI GANTC 7 cut(s) 34, 226, 290, 653, 662, 668, 1190
HpaI GTTAAC 1 cut(s) 100
HpaII CCGG 2 cut(s) 274, 1080
HphI GGTGA 1 cut(s) 1199
Hpy166II GTNNAC 3 cut(s) 100, 691, 1060
Hpy188I TCNGA 6 cut(s) 39, 225, 584, 667, 856, 943
Hpy188III TCNNGA 3 cut(s) 113, 236, 337
Hpy8I GTNNAC 3 cut(s) 100, 691, 1060
HpyAV CCTTC 5 cut(s) 119, 240, 275, 589, 1222
HpyCH4III ACNGT 3 cut(s) 683, 793, 1070
HpyCH4V TGCA 7 cut(s) 146, 171, 191, 354, 447, 733, 831
HpyF10VI GCNNNNNNNGC 1 cut(s) 813
HpyF3I CTNAG 6 cut(s) 222, 698, 803, 817, 940, 965
Hsp92II CATG 5 cut(s) 256, 364, 497, 733, 1002
HspAI GCGC 1 cut(s) 957
Ksp22I TGATCA 1 cut(s) 526
KspAI GTTAAC 1 cut(s) 100
Kzo9I GATC 8 cut(s) 238, 259, 387, 466, 526, 995, 1095, 1230
LmnI GCTCC 1 cut(s) 4
Lsp1109I GCAGC 2 cut(s) 1025, 1132
MaeIII GTNAC 3 cut(s) 433, 1032, 1082
MalI GATC 8 cut(s) 240, 261, 389, 468, 528, 997, 1097, 1232
MboI GATC 8 cut(s) 238, 259, 387, 466, 526, 995, 1095, 1230
MboII GAAGA 9 cut(s) 52, 116, 142, 322, 626, 629, 871, 874, 926
MfeI CAATTG 1 cut(s) 279
MflI RGATCY 2 cut(s) 238, 466
MhlI GDGCHC 2 cut(s) 9, 512
MluCI AATT 7 cut(s) 13, 279, 355, 400, 571, 944, 1163
MlyI GAGTC 2 cut(s) 284, 662
MmeI TCCRAC 2 cut(s) 372, 450
MroXI GAANNNNTTC 1 cut(s) 108
MseI TTAA 4 cut(s) 27, 99, 270, 1103
MslI CAYNNNNRTG 2 cut(s) 503, 1039
MspA1I CMGCKG 2 cut(s) 296, 463
MspCI CTTAAG 1 cut(s) 1102
MspI CCGG 2 cut(s) 274, 1080
MspR9I CCNGG 1 cut(s) 865
MunI CAATTG 1 cut(s) 279
Mva1269I GAATGC 3 cut(s) 146, 914, 927
MvaI CCWGG 1 cut(s) 865
MvnI CGCG 1 cut(s) 959
MwoI GCNNNNNNNGC 1 cut(s) 813
NdeII GATC 8 cut(s) 238, 259, 387, 466, 526, 995, 1095, 1230
NlaIII CATG 5 cut(s) 256, 364, 497, 733, 1002
NlaIV GGNNCC 3 cut(s) 240, 468, 1078
NmeAIII GCCGAG 1 cut(s) 1138
NmuCI GTSAC 2 cut(s) 433, 1032
NspI RCATGY 1 cut(s) 733
OliI CACNNNNGTG 1 cut(s) 1039
PctI GAATGC 3 cut(s) 146, 914, 927
PdmI GAANNNNTTC 1 cut(s) 108
PfeI GAWTC 5 cut(s) 34, 226, 653, 662, 1190
PflMI CCANNNNNTGG 1 cut(s) 1155
PinAI ACCGGT 1 cut(s) 273
PkrI GCNGC 2 cut(s) 1015, 1147
PleI GAGTC 2 cut(s) 284, 662
PpsI GAGTC 2 cut(s) 284, 662
Psp124BI GAGCTC 1 cut(s) 512
Psp6I CCWGG 1 cut(s) 863
PspEI GGTNACC 1 cut(s) 1082
PspFI CCCAGC 1 cut(s) 19
PspGI CCWGG 1 cut(s) 863
PspN4I GGNNCC 3 cut(s) 240, 468, 1078
PstNI CAGNNNCTG 3 cut(s) 377, 665, 1093
PsuI RGATCY 2 cut(s) 238, 466
RsaI GTAC 3 cut(s) 123, 860, 890
RsaNI GTAC 3 cut(s) 122, 859, 889
RseI CAYNNNNRTG 2 cut(s) 503, 1039
SacI GAGCTC 1 cut(s) 512
SaqAI TTAA 4 cut(s) 27, 99, 270, 1103
SatI GCNGC 2 cut(s) 1014, 1146
Sau3AI GATC 8 cut(s) 238, 259, 387, 466, 526, 995, 1095, 1230
ScaI AGTACT 1 cut(s) 890
SchI GAGTC 2 cut(s) 284, 662
ScrFI CCNGG 1 cut(s) 865
SduI GDGCHC 2 cut(s) 9, 512
SfcI CTRYAG 1 cut(s) 657
SmiMI CAYNNNNRTG 2 cut(s) 503, 1039
SmlI CTYRAG 3 cut(s) 511, 595, 1102
SmoI CTYRAG 3 cut(s) 511, 595, 1102
Sse9I AATT 7 cut(s) 13, 279, 355, 400, 571, 944, 1163
SsiI CCGC 6 cut(s) 154, 294, 326, 397, 461, 912
SstI GAGCTC 1 cut(s) 512
StyD4I CCNGG 1 cut(s) 863
StyI CCWWGG 2 cut(s) 242, 1226
TaaI ACNGT 3 cut(s) 683, 793, 1070
TaqI TCGA 8 cut(s) 128, 258, 642, 885, 897, 994, 1121, 1233
TasI AATT 7 cut(s) 13, 279, 355, 400, 571, 944, 1163
TatI WGTACW 1 cut(s) 888
TfiI GAWTC 5 cut(s) 34, 226, 653, 662, 1190
Tru1I TTAA 4 cut(s) 27, 99, 270, 1103
Tru9I TTAA 4 cut(s) 27, 99, 270, 1103
TscAI CASTG 2 cut(s) 607, 688
TseFI GTSAC 2 cut(s) 433, 1032
TseI GCWGC 2 cut(s) 1013, 1145
Tsp45I GTSAC 2 cut(s) 433, 1032
TspDTI ATGAA 4 cut(s) 47, 241, 406, 465
TspGWI ACGGA 1 cut(s) 751
TspRI CASTG 2 cut(s) 607, 688
Van91I CCANNNNNTGG 1 cut(s) 1155
Vha464I CTTAAG 1 cut(s) 1102
XagI CCTNNNNNAGG 1 cut(s) 435
XapI RAATTY 2 cut(s) 571, 944
XceI RCATGY 1 cut(s) 733
XcmI CCANNNNNNNNNTGG 1 cut(s) 1177
XmnI GAANNNNTTC 1 cut(s) 108
ZrmI AGTACT 1 cut(s) 890
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.