Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr8

Orthogroup ID

OG0011756

Physical Location & Seq

Genomic Coordinates Reverse (-)

2987987 .. 2988580

Gene Structure 594 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom08g03960.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 594 bp

ATGGAGCACAACATTTGCCCAGCTTTTACGATGAATCGGAAGAGAAAATCCCTAGAGCAAGATGATTGCATTTCAAGCACCTTTGGTATGGATGAGCTTAATGAAGACCTTCTCGAAAGGGTGCTGTCGAGACTACCAACATCTGCCTTCTTCCGCCTTACTTCGGTGTGCAAAAGATGGAAATCAGTTGCATCTTCTCCCAGTTTTAAGCTTGCCTGCTCTCAGATACCCTCTCGGGATCCATGGTTTTTCATGGTCGATCCCCTTCTCAATCGATCAATTGTCTTTGACTCCTCTGAAAGAAGCTGGAAGAAACTCAATCATCCACCTCTCCTCCAGAAGAACTCCAACCGCAATTCCATGCCTGTTTCAGCCTCTGGTGGCTTGATCTGTTTCCGCAATTCACAGGGCAACTTCATTGTATCCAACCCCGTGACAGGAGTTTGCAACGAACACCCTCCGCTGGATCCATCCCTACGAAATCTCACATTCCATGCCATTGTGATGAGCTCATATCCCAAGTATCGATCAGCGCTCTTACAAGCTTGTTGTAGTCTTCGGCGAGTTTCCAAAACTGTCCTTTCGAGTGTATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004842 GO:0006464 GO:0006508 GO:0006511 GO:0006807 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009987 GO:0010498 GO:0016567 GO:0016740 GO:0019538 GO:0019787 GO:0019941 GO:0030163 GO:0031146 GO:0032446 GO:0036211 GO:0043161 GO:0043170 GO:0043412 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0051603 GO:0070647 GO:0071704 GO:0140096 GO:1901564 GO:1901565 GO:1901575

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

F-box

Protein Analysis

198

Amino Acids

22.25

Weight (kDa)

9.5

Isoelectric Point (pI)

66.0

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
F-box	PF00646	31 - 70	2.5e-09	F-box domain
F-box-like	PF12937	36 - 68	3e-06	F-box-like

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0011756)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G33160 AT4G33160
fragaria_vesca	FvH4_2g37090
malus_domestica	MD08G1047200.v1.1 MD15G1046700.v1.1
prunus_persica	Prupe.1G401100_v2.0.a1
pyrus_communis	pycom08g03960 pycom15g04440 pycom15g04450
rosa_chinensis	RchiOBHm_Chr6g0304701
rosa_multiflora	Rmu_co8288461.1_g000001 Rmu_sc0003341.1_g000008
rosa_roxburghii	Rroxscaffold_7G00163580
rosa_rugosa	Rorug06G0333600
rosa_samantha	Rh6AG445700 Rh6BG456200 Rh6CG458600 Rh6DG445800
rosa_wichuraiana	Rw6G038760

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	4 cut(s)	154, 352, 397, 461
AclWI	GGATC	5 cut(s)	233, 246, 254, 461, 474
AfeI	AGCGCT	1 cut(s)	534
AfiI	CCNNNNNNNGG	3 cut(s)	163, 437, 463
AgsI	TTSAA	1 cut(s)	75
AluBI	AGCT	6 cut(s)	23, 97, 211, 306, 510, 545
AluI	AGCT	6 cut(s)	23, 97, 211, 306, 510, 545
Alw21I	GWGCWC	2 cut(s)	9, 512
Alw26I	GTCTC	1 cut(s)	124
AlwI	GGATC	5 cut(s)	233, 246, 254, 461, 474
AlwNI	CAGNNNCTG	1 cut(s)	377
Ama87I	CYCGRG	1 cut(s)	234
Aor51HI	AGCGCT	1 cut(s)	534
Asp700I	GAANNNNTTC	1 cut(s)	108
AspLEI	GCGC	1 cut(s)	535
AvaI	CYCGRG	1 cut(s)	234
BamHI	GGATCC	2 cut(s)	238, 466
BanII	GRGCYC	1 cut(s)	512
BbsI	GAAGAC	2 cut(s)	111, 548
Bbv12I	GWGCWC	2 cut(s)	9, 512
BccI	CCATC	2 cut(s)	171, 478
BciVI	GTATCC	1 cut(s)	433
BcoDI	GTCTC	1 cut(s)	124
BfaI	CTAG	1 cut(s)	53
BfoI	RGCGCY	1 cut(s)	536
BfuI	GTATCC	1 cut(s)	433
BmeT110I	CYCGRG	1 cut(s)	234
BmiI	GGNNCC	2 cut(s)	240, 468
BmrI	ACTGGG	1 cut(s)	195
BmsI	GCATC	1 cut(s)	200
BmuI	ACTGGG	1 cut(s)	195
BpiI	GAAGAC	2 cut(s)	111, 548
BpmI	CTGGAG	1 cut(s)	320
Bsa29I	ATCGAT	2 cut(s)	274, 526
BsaBI	GATNNNNATC	1 cut(s)	181
BsaJI	CCNNGG	1 cut(s)	242
BsaXI	ACNNNNNCTCC	2 cut(s)	318, 348
Bsc4I	CCNNNNNNNGG	3 cut(s)	163, 437, 463
Bse1I	ACTGG	1 cut(s)	201
Bse8I	GATNNNNATC	1 cut(s)	181
BseCI	ATCGAT	2 cut(s)	274, 526
BseDI	CCNNGG	1 cut(s)	242
BseGI	GGATG	3 cut(s)	97, 322, 470
BseJI	GATNNNNATC	1 cut(s)	181
BseLI	CCNNNNNNNGG	3 cut(s)	163, 437, 463
BseMII	CTCAG	1 cut(s)	236
BseNI	ACTGG	1 cut(s)	201
BseRI	GAGGAG	2 cut(s)	283, 323
BseYI	CCCAGC	1 cut(s)	19
BshVI	ATCGAT	2 cut(s)	274, 526
BsiHKAI	GWGCWC	2 cut(s)	9, 512
BsiHKCI	CYCGRG	1 cut(s)	234
BslI	CCNNNNNNNGG	3 cut(s)	163, 437, 463
BsmAI	GTCTC	1 cut(s)	124
BsoBI	CYCGRG	1 cut(s)	234
Bsp1286I	GDGCHC	2 cut(s)	9, 512
Bsp143I	GATC	6 cut(s)	238, 259, 275, 387, 466, 527
Bsp19I	CCATGG	1 cut(s)	242
BspACI	CCGC	4 cut(s)	154, 352, 397, 461
BspCNI	CTCAG	1 cut(s)	235
BspDI	ATCGAT	2 cut(s)	274, 526
BspLI	GGNNCC	2 cut(s)	240, 468
BspPI	GGATC	5 cut(s)	233, 246, 254, 461, 474
BsrI	ACTGG	1 cut(s)	201
BssECI	CCNNGG	1 cut(s)	242
BssMI	GATC	6 cut(s)	238, 259, 275, 387, 466, 527
BssT1I	CCWWGG	1 cut(s)	242
Bst4CI	ACNGT	1 cut(s)	577
Bst6I	CTCTTC	1 cut(s)	35
BstC8I	GCNNGC	2 cut(s)	213, 217
BstDEI	CTNAG	1 cut(s)	222
BstDSI	CCRYGG	1 cut(s)	242
BstF5I	GGATG	3 cut(s)	97, 322, 470
BstH2I	RGCGCY	1 cut(s)	536
BstHHI	GCGC	1 cut(s)	535
BstKTI	GATC	6 cut(s)	241, 262, 278, 390, 469, 530
BstMAI	GTCTC	1 cut(s)	124
BstMBI	GATC	6 cut(s)	238, 259, 275, 387, 466, 527
BstMWI	GCNNNNNNNGC	1 cut(s)	75
BstV2I	GAAGAC	2 cut(s)	111, 548
BstX2I	RGATCY	2 cut(s)	238, 466
BstYI	RGATCY	2 cut(s)	238, 466
Bsu15I	ATCGAT	2 cut(s)	274, 526
BsuI	GTATCC	1 cut(s)	433
BsuTUI	ATCGAT	2 cut(s)	274, 526
BtgI	CCRYGG	1 cut(s)	242
BtsCI	GGATG	3 cut(s)	97, 322, 470
Cac8I	GCNNGC	2 cut(s)	213, 217
CaiI	CAGNNNCTG	1 cut(s)	377
CfoI	GCGC	1 cut(s)	535
ClaI	ATCGAT	2 cut(s)	274, 526
CviAII	CATG	4 cut(s)	243, 253, 361, 494
CviJI	RGCY	8 cut(s)	23, 97, 211, 306, 374, 384, 510, 545
CviKI_1	RGCY	8 cut(s)	23, 97, 211, 306, 374, 384, 510, 545
DdeI	CTNAG	1 cut(s)	222
DpnI	GATC	6 cut(s)	240, 261, 277, 389, 468, 529
DpnII	GATC	6 cut(s)	238, 259, 275, 387, 466, 527
Eam1104I	CTCTTC	1 cut(s)	35
EarI	CTCTTC	1 cut(s)	35
EciI	GGCGGA	1 cut(s)	143
Ecl136II	GAGCTC	1 cut(s)	510
Eco130I	CCWWGG	1 cut(s)	242
Eco24I	GRGCYC	1 cut(s)	512
Eco47III	AGCGCT	1 cut(s)	534
Eco53kI	GAGCTC	1 cut(s)	510
Eco88I	CYCGRG	1 cut(s)	234
EcoICRI	GAGCTC	1 cut(s)	510
EcoT14I	CCWWGG	1 cut(s)	242
EcoT38I	GRGCYC	1 cut(s)	512
ErhI	CCWWGG	1 cut(s)	242
FaeI	CATG	4 cut(s)	246, 256, 364, 497
FaiI	YATR	7 cut(s)	89, 244, 254, 362, 495, 514, 592
FatI	CATG	4 cut(s)	242, 252, 360, 493
FokI	GGATG	3 cut(s)	104, 309, 457
FriOI	GRGCYC	1 cut(s)	512
FspBI	CTAG	1 cut(s)	53
GlaI	GCGC	1 cut(s)	534
GsaI	CCCAGC	1 cut(s)	23
GsuI	CTGGAG	1 cut(s)	320
HaeII	RGCGCY	1 cut(s)	536
HhaI	GCGC	1 cut(s)	535
Hin1II	CATG	4 cut(s)	246, 256, 364, 497
Hin6I	GCGC	1 cut(s)	533
HinP1I	GCGC	1 cut(s)	533
HindIII	AAGCTT	2 cut(s)	209, 543
HinfI	GANTC	2 cut(s)	34, 290
Hpy188I	TCNGA	3 cut(s)	39, 225, 298
Hpy188III	TCNNGA	4 cut(s)	113, 129, 236, 337
HpyAV	CCTTC	3 cut(s)	119, 157, 275
HpyCH4III	ACNGT	1 cut(s)	577
HpyCH4V	TGCA	4 cut(s)	69, 171, 191, 447
HpyF10VI	GCNNNNNNNGC	1 cut(s)	75
HpyF3I	CTNAG	1 cut(s)	222
Hsp92II	CATG	4 cut(s)	246, 256, 364, 497
HspAI	GCGC	1 cut(s)	533
Kzo9I	GATC	6 cut(s)	238, 259, 275, 387, 466, 527
LmnI	GCTCC	1 cut(s)	4
LweI	GCATC	1 cut(s)	200
MaeI	CTAG	1 cut(s)	53
MaeIII	GTNAC	1 cut(s)	433
MalI	GATC	6 cut(s)	240, 261, 277, 389, 468, 529
MboI	GATC	6 cut(s)	238, 259, 275, 387, 466, 527
MboII	GAAGA	7 cut(s)	52, 116, 142, 186, 322, 352, 548
MfeI	CAATTG	1 cut(s)	279
MflI	RGATCY	2 cut(s)	238, 466
MhlI	GDGCHC	2 cut(s)	9, 512
MluCI	AATT	3 cut(s)	279, 355, 400
MlyI	GAGTC	1 cut(s)	284
MmeI	TCCRAC	2 cut(s)	372, 450
MnlI	CCTC	6 cut(s)	241, 304, 339, 344, 385, 468
MroXI	GAANNNNTTC	1 cut(s)	108
MseI	TTAA	2 cut(s)	99, 207
MslI	CAYNNNNRTG	1 cut(s)	503
MspA1I	CMGCKG	1 cut(s)	463
MunI	CAATTG	1 cut(s)	279
MwoI	GCNNNNNNNGC	1 cut(s)	75
NcoI	CCATGG	1 cut(s)	242
NdeII	GATC	6 cut(s)	238, 259, 275, 387, 466, 527
NlaIII	CATG	4 cut(s)	246, 256, 364, 497
NlaIV	GGNNCC	2 cut(s)	240, 468
NmuCI	GTSAC	1 cut(s)	433
PdmI	GAANNNNTTC	1 cut(s)	108
PfeI	GAWTC	1 cut(s)	34
PleI	GAGTC	1 cut(s)	284
PpsI	GAGTC	1 cut(s)	284
Psp124BI	GAGCTC	1 cut(s)	512
PspFI	CCCAGC	1 cut(s)	19
PspN4I	GGNNCC	2 cut(s)	240, 468
PstNI	CAGNNNCTG	1 cut(s)	377
PsuI	RGATCY	2 cut(s)	238, 466
RseI	CAYNNNNRTG	1 cut(s)	503
SacI	GAGCTC	1 cut(s)	512
SaqAI	TTAA	2 cut(s)	99, 207
Sau3AI	GATC	6 cut(s)	238, 259, 275, 387, 466, 527
SchI	GAGTC	1 cut(s)	284
SduI	GDGCHC	2 cut(s)	9, 512
SetI	ASST	9 cut(s)	25, 83, 99, 111, 213, 308, 331, 512, 547
SfaNI	GCATC	1 cut(s)	200
SmiMI	CAYNNNNRTG	1 cut(s)	503
Sse9I	AATT	3 cut(s)	279, 355, 400
SsiI	CCGC	4 cut(s)	154, 352, 397, 461
SspMI	CTAG	1 cut(s)	53
SstI	GAGCTC	1 cut(s)	512
StyI	CCWWGG	1 cut(s)	242
TaaI	ACNGT	1 cut(s)	577
TaqI	TCGA	6 cut(s)	114, 128, 258, 274, 526, 584
TasI	AATT	3 cut(s)	279, 355, 400
TfiI	GAWTC	1 cut(s)	34
Tru1I	TTAA	2 cut(s)	99, 207
Tru9I	TTAA	2 cut(s)	99, 207
TseFI	GTSAC	1 cut(s)	433
Tsp45I	GTSAC	1 cut(s)	433
TspDTI	ATGAA	4 cut(s)	47, 117, 241, 406
XmnI	GAANNNNTTC	1 cut(s)	108
XspI	CTAG	1 cut(s)	53

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.