Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000006

Orthogroup ID

OG0011756

Physical Location & Seq

Genomic Coordinates Forward (+)

48612302 .. 48613562

Gene Structure 1261 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug06G0333600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 849 bp

ATGGAGAACCACAGTGCTGATGGTCCGACTTGTGATTTGAAGGTGAATACATGTTGCAAGGAATGTGCCTTTAAAATAAAGGAAAAGTTACAGGAACTAAATGGAGTGAATTCTATCAGTACAATACATGAAGAAAAGGAGATGGTGCAAGATACTAATGAGAAAGAAGCACATGGTGGCATAAATGAAGAAAAAGAGGTGGTAACATATACCAAGAGGAAGGATACTCGTTGTGCTAAACTATTCAGAAGGCGAATATCAAGGCTCGGGAAAATGGCCGGGTTTCTTGTTTCCTACAAGATCAAGAACCTTCTGGGTGCCCCAAAGATATCTAAGCCTTCTGCAAATCAAGCACCACCATTCAACAGCGTTCCAAATGATTACAAAAAAAAAATCGTTTCCAGGGCAAGAAACTGCCAATACTGCAGTGAGAGTGATAATTCCGATTGCGATGAAGATGAACGCACCTATAATAATGTGCCAAGAAGGGCGCCTAAGGGTACCATGTATAGGCCTCATCCTCCACTCGCGCTTGTTCACCAGGTAAGGCCGAGGCCATATATTTACGCGAACAACTGGGGAAGACCACCACCACCACAGCCGCCCTTATTGCCGCCGCCGCCTCCCCCATATGGGTACCAAAACCCTTATGGTTACAATTTGATGCCGCCGCCACATTTATATGGTTACCAAAATAACCCTTACAATTACAACTTCATCAACGGAATGGTGCCCCAGCCTCTGTATCCTTATTATTATGGTCAGAAACCAAGGGATCCCCCAGTTGGCAACTCATTCATCCATTTTTTAAGCGATGATAACACAGCTAGTAGTTGCAGTCTAATGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004842 GO:0006464 GO:0006508 GO:0006511 GO:0006807 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009987 GO:0010498 GO:0016567 GO:0016740 GO:0019538 GO:0019787 GO:0019941 GO:0030163 GO:0031146 GO:0032446 GO:0036211 GO:0043161 GO:0043170 GO:0043412 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0051603 GO:0070647 GO:0071704 GO:0140096 GO:1901564 GO:1901565 GO:1901575

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

F-box

Protein Analysis

282

Amino Acids

32.17

Weight (kDa)

9.06

Isoelectric Point (pI)

42.03

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0011756)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G33160 AT4G33160
fragaria_vesca	FvH4_2g37090
malus_domestica	MD08G1047200.v1.1 MD15G1046700.v1.1
prunus_persica	Prupe.1G401100_v2.0.a1
pyrus_communis	pycom08g03960 pycom15g04440 pycom15g04450
rosa_chinensis	RchiOBHm_Chr6g0304701
rosa_multiflora	Rmu_co8288461.1_g000001 Rmu_sc0003341.1_g000008
rosa_roxburghii	Rroxscaffold_7G00163580
rosa_rugosa	Rorug06G0333600
rosa_samantha	Rh6AG445700 Rh6BG456200 Rh6CG458600 Rh6DG445800
rosa_wichuraiana	Rw6G038760

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	2 cut(s)	500, 636
AccB1I	GGYRCC	5 cut(s)	317, 490, 500, 636, 730
AccII	CGCG	2 cut(s)	530, 569
AciI	CCGC	6 cut(s)	602, 614, 617, 620, 668, 671
AclWI	GGATC	2 cut(s)	770, 783
AcoI	YGGCCR	1 cut(s)	276
AcsI	RAATTY	1 cut(s)	109
AcyI	GRCGYC	1 cut(s)	491
AdeI	CACNNNGTG	1 cut(s)	176
AfaI	GTAC	3 cut(s)	121, 502, 638
AfiI	CCNNNNNNNGG	4 cut(s)	510, 632, 633, 785
AflIII	ACRYGT	1 cut(s)	50
AgsI	TTSAA	2 cut(s)	40, 364
AjnI	CCWGG	2 cut(s)	401, 540
AluBI	AGCT	1 cut(s)	827
AluI	AGCT	1 cut(s)	827
AlwI	GGATC	2 cut(s)	770, 783
AlwNI	CAGNNNCTG	1 cut(s)	742
Ama87I	CYCGRG	1 cut(s)	266
AoxI	GGCC	4 cut(s)	276, 512, 548, 554
ApoI	RAATTY	1 cut(s)	109
ArsI	GACNNNNNNTTYG	2 cut(s)	19, 51
Asp718I	GGTACC	2 cut(s)	500, 636
AspLEI	GCGC	2 cut(s)	493, 532
AspS9I	GGNCC	1 cut(s)	23
AsuC2I	CCSGG	1 cut(s)	280
AsuHPI	GGTGA	2 cut(s)	55, 530
AvaI	CYCGRG	1 cut(s)	266
AvaII	GGWCC	1 cut(s)	23
AxyI	CCTNAGG	1 cut(s)	495
BaeGI	GKGCMC	2 cut(s)	322, 735
BamHI	GGATCC	1 cut(s)	775
BanI	GGYRCC	5 cut(s)	317, 490, 500, 636, 730
BbsI	GAAGAC	1 cut(s)	589
BccI	CCATC	2 cut(s)	14, 136
BciT130I	CCWGG	2 cut(s)	403, 542
BciVI	GTATCC	2 cut(s)	217, 756
BcnI	CCSGG	1 cut(s)	280
BfaI	CTAG	1 cut(s)	828
BfmI	CTRYAG	1 cut(s)	424
BfoI	RGCGCY	1 cut(s)	494
BfuI	GTATCC	2 cut(s)	217, 756
BisI	GCNGC	6 cut(s)	602, 614, 617, 620, 668, 671
BlsI	GCNGC	6 cut(s)	603, 615, 618, 621, 669, 672
Bme1390I	CCNGG	3 cut(s)	280, 403, 542
Bme18I	GGWCC	1 cut(s)	23
BmeT110I	CYCGRG	1 cut(s)	266
BmgT120I	GGNCC	1 cut(s)	23
BmiI	GGNNCC	6 cut(s)	319, 492, 502, 638, 732, 777
BmrFI	CCNGG	3 cut(s)	280, 403, 542
BmrI	ACTGGG	2 cut(s)	586, 776
BmsI	GCATC	1 cut(s)	654
BmuI	ACTGGG	2 cut(s)	586, 776
BpiI	GAAGAC	1 cut(s)	589
BpuMI	CCSGG	1 cut(s)	280
BsaHI	GRCGYC	1 cut(s)	491
BsaJI	CCNNGG	3 cut(s)	402, 551, 770
Bsc4I	CCNNNNNNNGG	4 cut(s)	510, 632, 633, 785
Bse1I	ACTGG	2 cut(s)	581, 782
Bse21I	CCTNAGG	1 cut(s)	495
BseBI	CCWGG	2 cut(s)	403, 542
BseDI	CCNNGG	3 cut(s)	402, 551, 770
BseGI	GGATG	2 cut(s)	517, 798
BseLI	CCNNNNNNNGG	4 cut(s)	510, 632, 633, 785
BseNI	ACTGG	2 cut(s)	581, 782
BseSI	GKGCMC	2 cut(s)	322, 735
BseYI	CCCAGC	1 cut(s)	735
Bsh1236I	CGCG	2 cut(s)	530, 569
BshFI	GGCC	4 cut(s)	278, 514, 550, 556
BshNI	GGYRCC	5 cut(s)	317, 490, 500, 636, 730
BsiHKCI	CYCGRG	1 cut(s)	266
BsiSI	CCGG	1 cut(s)	279
BslI	CCNNNNNNNGG	4 cut(s)	510, 632, 633, 785
BsnI	GGCC	4 cut(s)	278, 514, 550, 556
BsoBI	CYCGRG	1 cut(s)	266
Bsp1286I	GDGCHC	2 cut(s)	322, 735
Bsp143I	GATC	2 cut(s)	300, 775
BspACI	CCGC	6 cut(s)	602, 614, 617, 620, 668, 671
BspANI	GGCC	4 cut(s)	278, 514, 550, 556
BspFNI	CGCG	2 cut(s)	530, 569
BspLI	GGNNCC	6 cut(s)	319, 492, 502, 638, 732, 777
BspMAI	CTGCAG	1 cut(s)	428
BspPI	GGATC	2 cut(s)	770, 783
BspT107I	GGYRCC	5 cut(s)	317, 490, 500, 636, 730
BsrI	ACTGG	2 cut(s)	581, 782
BssECI	CCNNGG	3 cut(s)	402, 551, 770
BssMI	GATC	2 cut(s)	300, 775
BssNI	GRCGYC	1 cut(s)	491
BssT1I	CCWWGG	1 cut(s)	770
Bst2UI	CCWGG	2 cut(s)	403, 542
Bst4CI	ACNGT	1 cut(s)	14
BstACI	GRCGYC	1 cut(s)	491
BstDEI	CTNAG	2 cut(s)	333, 495
BstEII	GGTNACC	1 cut(s)	686
BstF5I	GGATG	2 cut(s)	517, 798
BstFNI	CGCG	2 cut(s)	530, 569
BstH2I	RGCGCY	1 cut(s)	494
BstHHI	GCGC	2 cut(s)	493, 532
BstKTI	GATC	2 cut(s)	303, 778
BstMBI	GATC	2 cut(s)	300, 775
BstMWI	GCNNNNNNNGC	4 cut(s)	350, 423, 610, 619
BstNI	CCWGG	2 cut(s)	403, 542
BstNSI	RCATGY	1 cut(s)	54
BstPI	GGTNACC	1 cut(s)	686
BstSCI	CCNGG	3 cut(s)	278, 401, 540
BstSFI	CTRYAG	1 cut(s)	424
BstSLI	GKGCMC	2 cut(s)	322, 735
BstUI	CGCG	2 cut(s)	530, 569
BstV2I	GAAGAC	1 cut(s)	589
BstX2I	RGATCY	1 cut(s)	775
BstYI	RGATCY	1 cut(s)	775
Bsu36I	CCTNAGG	1 cut(s)	495
BsuI	GTATCC	2 cut(s)	217, 756
BsuRI	GGCC	4 cut(s)	278, 514, 550, 556
BtgZI	GCGATG	2 cut(s)	465, 828
BtsCI	GGATG	2 cut(s)	517, 798
BtsI	GCAGTG	1 cut(s)	433
BtsIMutI	CAGTG	2 cut(s)	19, 433
CaiI	CAGNNNCTG	1 cut(s)	742
CfoI	GCGC	2 cut(s)	493, 532
Cfr13I	GGNCC	1 cut(s)	23
CsiI	ACCWGGT	1 cut(s)	540
Csp6I	GTAC	3 cut(s)	120, 501, 637
CviAII	CATG	4 cut(s)	51, 128, 173, 505
CviJI	RGCY	9 cut(s)	265, 278, 337, 514, 550, 556, 601, 739, 827
CviKI_1	RGCY	9 cut(s)	265, 278, 337, 514, 550, 556, 601, 739, 827
CviQI	GTAC	3 cut(s)	120, 501, 637
DdeI	CTNAG	2 cut(s)	333, 495
DinI	GGCGCC	1 cut(s)	492
DpnI	GATC	2 cut(s)	302, 777
DpnII	GATC	2 cut(s)	300, 775
DraI	TTTAAA	1 cut(s)	73
DraIII	CACNNNGTG	1 cut(s)	176
EaeI	YGGCCR	1 cut(s)	276
Eco130I	CCWWGG	1 cut(s)	770
Eco147I	AGGCCT	1 cut(s)	514
Eco32I	GATATC	1 cut(s)	330
Eco47I	GGWCC	1 cut(s)	23
Eco81I	CCTNAGG	1 cut(s)	495
Eco88I	CYCGRG	1 cut(s)	266
Eco91I	GGTNACC	1 cut(s)	686
EcoO65I	GGTNACC	1 cut(s)	686
EcoRI	GAATTC	1 cut(s)	109
EcoRII	CCWGG	2 cut(s)	401, 540
EcoRV	GATATC	1 cut(s)	330
EcoT14I	CCWWGG	1 cut(s)	770
EgeI	GGCGCC	1 cut(s)	492
EheI	GGCGCC	1 cut(s)	492
ErhI	CCWWGG	1 cut(s)	770
FaeI	CATG	4 cut(s)	54, 131, 176, 508
FatI	CATG	4 cut(s)	50, 127, 172, 504
FauNDI	CATATG	1 cut(s)	631
Fnu4HI	GCNGC	6 cut(s)	602, 614, 617, 620, 668, 671
FokI	GGATG	2 cut(s)	504, 785
Fsp4HI	GCNGC	6 cut(s)	602, 614, 617, 620, 668, 671
FspBI	CTAG	1 cut(s)	828
GlaI	GCGC	2 cut(s)	492, 531
GluI	GCNGC	6 cut(s)	602, 614, 617, 620, 668, 671
GsaI	CCCAGC	1 cut(s)	739
HaeII	RGCGCY	1 cut(s)	494
HaeIII	GGCC	4 cut(s)	278, 514, 550, 556
HapII	CCGG	1 cut(s)	279
HhaI	GCGC	2 cut(s)	493, 532
Hin1I	GRCGYC	1 cut(s)	491
Hin1II	CATG	4 cut(s)	54, 131, 176, 508
Hin6I	GCGC	2 cut(s)	491, 530
HinP1I	GCGC	2 cut(s)	491, 530
HpaII	CCGG	1 cut(s)	279
HphI	GGTGA	2 cut(s)	55, 530
Hpy166II	GTNNAC	1 cut(s)	538
Hpy188I	TCNGA	4 cut(s)	27, 248, 445, 765
Hpy188III	TCNNGA	2 cut(s)	268, 304
Hpy8I	GTNNAC	1 cut(s)	538
HpyAV	CCTTC	6 cut(s)	34, 214, 243, 320, 348, 480
HpyCH4III	ACNGT	1 cut(s)	14
HpyCH4V	TGCA	5 cut(s)	57, 148, 344, 426, 837
HpyF10VI	GCNNNNNNNGC	4 cut(s)	350, 423, 610, 619
HpyF3I	CTNAG	2 cut(s)	333, 495
Hsp92I	GRCGYC	1 cut(s)	491
Hsp92II	CATG	4 cut(s)	54, 131, 176, 508
HspAI	GCGC	2 cut(s)	491, 530
KasI	GGCGCC	1 cut(s)	490
KpnI	GGTACC	2 cut(s)	504, 640
Kzo9I	GATC	2 cut(s)	300, 775
LweI	GCATC	1 cut(s)	654
MabI	ACCWGGT	1 cut(s)	540
MaeI	CTAG	1 cut(s)	828
MaeIII	GTNAC	4 cut(s)	87, 202, 653, 686
MalI	GATC	2 cut(s)	302, 777
MboI	GATC	2 cut(s)	300, 775
MboII	GAAGA	4 cut(s)	143, 200, 467, 594
MflI	RGATCY	1 cut(s)	775
MhlI	GDGCHC	2 cut(s)	322, 735
MluCI	AATT	4 cut(s)	109, 439, 658, 706
Mly113I	GGCGCC	1 cut(s)	491
MmeI	TCCRAC	1 cut(s)	50
MnlI	CCTC	7 cut(s)	190, 210, 525, 531, 546, 633, 750
MseI	TTAA	2 cut(s)	72, 809
MslI	CAYNNNNRTG	1 cut(s)	681
MspI	CCGG	1 cut(s)	279
MspR9I	CCNGG	3 cut(s)	280, 403, 542
MvaI	CCWGG	2 cut(s)	403, 542
MvnI	CGCG	2 cut(s)	530, 569
MwoI	GCNNNNNNNGC	4 cut(s)	350, 423, 610, 619
NarI	GGCGCC	1 cut(s)	491
NciI	CCSGG	1 cut(s)	280
NdeI	CATATG	1 cut(s)	631
NdeII	GATC	2 cut(s)	300, 775
NlaIII	CATG	4 cut(s)	54, 131, 176, 508
NlaIV	GGNNCC	6 cut(s)	319, 492, 502, 638, 732, 777
NmeAIII	GCCGAG	1 cut(s)	576
NspI	RCATGY	1 cut(s)	54
PceI	AGGCCT	1 cut(s)	514
PciI	ACATGT	1 cut(s)	50
PkrI	GCNGC	6 cut(s)	603, 615, 618, 621, 669, 672
PluTI	GGCGCC	1 cut(s)	494
PscI	ACATGT	1 cut(s)	50
Psp6I	CCWGG	2 cut(s)	401, 540
PspEI	GGTNACC	1 cut(s)	686
PspFI	CCCAGC	1 cut(s)	735
PspGI	CCWGG	2 cut(s)	401, 540
PspN4I	GGNNCC	6 cut(s)	319, 492, 502, 638, 732, 777
PspPI	GGNCC	1 cut(s)	23
PstI	CTGCAG	1 cut(s)	428
PstNI	CAGNNNCTG	1 cut(s)	742
PsuI	RGATCY	1 cut(s)	775
RsaI	GTAC	3 cut(s)	121, 502, 638
RsaNI	GTAC	3 cut(s)	120, 501, 637
RseI	CAYNNNNRTG	1 cut(s)	681
SaqAI	TTAA	2 cut(s)	72, 809
SatI	GCNGC	6 cut(s)	602, 614, 617, 620, 668, 671
Sau3AI	GATC	2 cut(s)	300, 775
Sau96I	GGNCC	1 cut(s)	23
ScrFI	CCNGG	3 cut(s)	280, 403, 542
SduI	GDGCHC	2 cut(s)	322, 735
SetI	ASST	6 cut(s)	45, 201, 312, 470, 546, 829
SexAI	ACCWGGT	1 cut(s)	540
SfaNI	GCATC	1 cut(s)	654
SfcI	CTRYAG	1 cut(s)	424
SfoI	GGCGCC	1 cut(s)	492
SinI	GGWCC	1 cut(s)	23
SmiMI	CAYNNNNRTG	1 cut(s)	681
Sse9I	AATT	4 cut(s)	109, 439, 658, 706
SseBI	AGGCCT	1 cut(s)	514
SsiI	CCGC	6 cut(s)	602, 614, 617, 620, 668, 671
SspDI	GGCGCC	1 cut(s)	490
SspMI	CTAG	1 cut(s)	828
StuI	AGGCCT	1 cut(s)	514
StyD4I	CCNGG	3 cut(s)	278, 401, 540
StyI	CCWWGG	1 cut(s)	770
TaaI	ACNGT	1 cut(s)	14
TasI	AATT	4 cut(s)	109, 439, 658, 706
TatI	WGTACW	1 cut(s)	119
TauI	GCSGC	6 cut(s)	604, 616, 619, 622, 670, 673
Tru1I	TTAA	2 cut(s)	72, 809
Tru9I	TTAA	2 cut(s)	72, 809
TscAI	CASTG	2 cut(s)	19, 433
TspDTI	ATGAA	6 cut(s)	144, 201, 468, 474, 706, 787
TspGWI	ACGGA	1 cut(s)	738
TspRI	CASTG	2 cut(s)	19, 433
VpaK11BI	GGWCC	1 cut(s)	23
XapI	RAATTY	1 cut(s)	109
XceI	RCATGY	1 cut(s)	54
XcmI	CCANNNNNNNNNTGG	2 cut(s)	17, 647
XspI	CTAG	1 cut(s)	828

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.