AT4G34140

glycine rich nucleic binding domain

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
4
Physical Location & Seq
Forward (+)
16350462 .. 16354434
3973 bp
Loading structure...
UTR
Exon/CDS
Intron
AT4G34140.7

Sequence Viewer

Length: 1593 bp
ATGCCCGACGACGATAAAGAGTTGCAGGAACCCAAGGAAGAAGACTCCTACGTTTGGGACAGCGATACGCAGCTATATATCCATCACAGTAGTGGGTTTTACCATGACCCAAATGCTGGTTGGTATTATTGTAGCAAGGATGGTCGTTACTACAAGCATGAAAATGGCGAATATGTTCCCTTGGAATACGACGAGTCTTCGGTGAACCCTCCTGGAGATATTGTCACCTATGAGCCATCTGAAGATGACTTAGGCAGAAAATGTGCATTTTCTCAGGCTGAGAATGTTGAAAATGGATGTGAAGTTTCTCTGAGTAATCCTGGAGAAACTCCTTCAGAGTCAACAGGGTGCCCAAATGACCAGGAACCTGAACATCGTCAACGACCTTCCTCATGGGTGGAAGATACACTAATTGAACTTTATCTGGATGGTTATAATCAACATCCCAGTGCTTCCAGCTATGAGAGGGCTTCTGGGGAAAATAATCAGGATTGTCAGATGTTGTCAGCTAATGGAGATGATGATGCTGAGGAACTTGAAGAGGGAGAATGGATTCCTGAAGAAGATTTTGATCCACAAGAAGAGAACTTTGGTGAAGCTGCTCCTTCAAGCGAGGAAGAAAGATGGCTAGCACAATATGGTCAAGTCATCGAATCCCCTGGGAAGACCCTGCCTGAGATCCCGTCTGTTGATTTGTGGGATTGGAAACTTGTATGTGAAACCAGAGAAGCTGACAATGAACAGGTGGCTAGGTTAGTAGGGAGGCTGGTCAGACAGTCGGCGAACCTTCATCCATCTGTGGTTTCTGGTGGCACACTTTTAAAAACTGCCCCAATTTGTGAAGCTCGGCTTCACCTAGTGCGAGTTAGGACAGGTCAGGTCTATAAACTTCGAAATCCTAGTGCCAAATACCTTGCATCCTTGTCAGTATATGACGCCTCCAACCCAACAAAAGATTGGGAATTCCCTGATATTTCAACTGAATGGCAAAATCCTGATACAAAACGCAAAGCCAAGAAGGGGAAACCAAAAAGGGCCAGCAAACTTACAGTGAAGCCTAGTGAAGTAGACATGATTGAAGAGAAGACAAAACGCAAAGCTAAGAAGGTAAAACCAAAAGCTGACTGCAAACTTACGGTGAAGCCTTGTGAAGTCGACATGTTTGAAGAGCAAGAGACAAAACGCGAAGCTAAGAAGGTGAAACCAAAAACTGACTGCAAACTCACAGTGAAGCCACGAGATGAAGTCAACATGATTGAAGAGCAGAGAAGCTGTTCATACAGAGATAGAGCCGCTGAGAGAAGAAATTTGCATGGTGGATATGGTGTTGGACCAGGTCAAAAAGGAACAACAGTGGACCATAACACGGACGAGCATTCAGTTCCCGACACTGGTTCTGAAGAGGATACTGTAGCAGAAGCATTGGAGCTATCATTTGGATCTGGAAGTTATGCAAGGAGGATAATGGGAAACATGGGTTGGAAGGAGGGTGAGACGCTAGGGAAGAATACAAAAGGTTTGGTTGAACCGATACAAGCAGTGGGCAACACTGGGAATGTAGGGCTAGGATTTCCTCAAAGGAGAAGGAAATAA

Protein Analysis

530

Amino Acids

59.67

Weight (kDa)

4.9

Isoelectric Point (pI)

43.63

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
G-patch PF01585 344 - 384 4.7e-12 G-patch domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 435
AccB1I GGYRCC 1 cut(s) 348
AccB7I CCANNNNNTGG 1 cut(s) 116
AccI GTMKAC 2 cut(s) 1068, 1155
AccII CGCG 1 cut(s) 1185
AciI CCGC 1 cut(s) 1293
AclWI GGATC 3 cut(s) 566, 673, 1447
AcsI RAATTY 2 cut(s) 962, 1306
AcuI CTGAAG 4 cut(s) 261, 318, 579, 1419
AcyI GRCGYC 1 cut(s) 936
AdeI CACNNNGTG 1 cut(s) 859
AfiI CCNNNNNNNGG 5 cut(s) 54, 116, 1020, 1366, 1391
AflIII ACRYGT 1 cut(s) 1158
AgsI TTSAA 9 cut(s) 290, 416, 539, 609, 978, 1079, 1166, 1259, 1526
AjnI CCWGG 5 cut(s) 211, 319, 360, 658, 1333
AjuI GAANNNNNNNTTGG 4 cut(s) 573, 605, 1462, 1494
AleI CACNNNNGTG 1 cut(s) 90
Alw26I GTCTC 2 cut(s) 1169, 1487
AlwI GGATC 3 cut(s) 566, 673, 1447
AoxI GGCC 1 cut(s) 1035
ApeKI GCWGC 2 cut(s) 70, 599
ApoI RAATTY 2 cut(s) 962, 1306
Asp700I GAANNNNTTC 3 cut(s) 174, 552, 1273
AspS9I GGNCC 3 cut(s) 1035, 1331, 1357
AsuHPI GGTGA 7 cut(s) 214, 217, 605, 845, 1150, 1210, 1502
AsuII TTCGAA 1 cut(s) 892
AsuNHI GCTAGC 1 cut(s) 628
AvaII GGWCC 2 cut(s) 1331, 1357
BaeGI GKGCMC 1 cut(s) 353
BanI GGYRCC 1 cut(s) 348
BauI CACGAG 1 cut(s) 1236
BbsI GAAGAC 4 cut(s) 48, 189, 671, 1091
BbvCI CCTCAGC 1 cut(s) 528
BbvI GCAGC 2 cut(s) 82, 586
BccI CCATC 6 cut(s) 90, 134, 244, 422, 618, 802
BciT130I CCWGG 5 cut(s) 213, 321, 362, 660, 1335
BciVI GTATCC 1 cut(s) 1399
BcoDI GTCTC 2 cut(s) 1169, 1487
BfaI CTAG 7 cut(s) 629, 750, 857, 900, 1059, 1499, 1565
BfmI CTRYAG 1 cut(s) 1410
BfuI GTATCC 1 cut(s) 1399
BisI GCNGC 3 cut(s) 71, 600, 1293
BlsI GCNGC 3 cut(s) 72, 601, 1294
Bme1390I CCNGG 5 cut(s) 213, 321, 362, 660, 1335
Bme18I GGWCC 2 cut(s) 1331, 1357
BmgT120I GGNCC 3 cut(s) 1035, 1331, 1357
BmiI GGNNCC 3 cut(s) 30, 350, 366
BmrFI CCNGG 5 cut(s) 213, 321, 362, 660, 1335
BmrI ACTGGG 2 cut(s) 441, 1560
BmsI GCATC 2 cut(s) 514, 926
BmtI GCTAGC 1 cut(s) 632
BmuI ACTGGG 2 cut(s) 441, 1560
BpiI GAAGAC 4 cut(s) 48, 189, 671, 1091
BpmI CTGGAG 2 cut(s) 234, 342
Bpu10I CCTNAGC 1 cut(s) 528
Bpu14I TTCGAA 1 cut(s) 892
BsaBI GATNNNNATC 1 cut(s) 570
BsaHI GRCGYC 1 cut(s) 936
BsaJI CCNNGG 4 cut(s) 33, 180, 658, 659
BsaXI ACNNNNNCTCC 2 cut(s) 207, 237
Bsc4I CCNNNNNNNGG 5 cut(s) 54, 116, 1020, 1366, 1391
Bse1I ACTGG 3 cut(s) 447, 1396, 1555
Bse8I GATNNNNATC 1 cut(s) 570
BseBI CCWGG 5 cut(s) 213, 321, 362, 660, 1335
BseDI CCNNGG 4 cut(s) 33, 180, 658, 659
BseGI GGATG 6 cut(s) 145, 302, 433, 442, 790, 917
BseJI GATNNNNATC 1 cut(s) 570
BseLI CCNNNNNNNGG 5 cut(s) 54, 116, 1020, 1366, 1391
BseMII CTCAG 6 cut(s) 270, 287, 302, 519, 666, 1287
BseNI ACTGG 3 cut(s) 447, 1396, 1555
BseSI GKGCMC 1 cut(s) 353
BseXI GCAGC 2 cut(s) 82, 586
Bsh1236I CGCG 1 cut(s) 1185
BshFI GGCC 1 cut(s) 1037
BshNI GGYRCC 1 cut(s) 348
BslFI GGGAC 1 cut(s) 71
BslI CCNNNNNNNGG 5 cut(s) 54, 116, 1020, 1366, 1391
BsmAI GTCTC 2 cut(s) 1169, 1487
BsmBI CGTCTC 1 cut(s) 1487
BsmFI GGGAC 1 cut(s) 71
BsmI GAATGC 1 cut(s) 1375
BsnI GGCC 1 cut(s) 1037
Bsp119I TTCGAA 1 cut(s) 892
Bsp1286I GDGCHC 1 cut(s) 353
Bsp143I GATC 3 cut(s) 571, 678, 1439
BspACI CCGC 1 cut(s) 1293
BspANI GGCC 1 cut(s) 1037
BspCNI CTCAG 6 cut(s) 271, 286, 303, 520, 667, 1288
BspFNI CGCG 1 cut(s) 1185
BspLI GGNNCC 3 cut(s) 30, 350, 366
BspOI GCTAGC 1 cut(s) 632
BspPI GGATC 3 cut(s) 566, 673, 1447
BspQI GCTCTTC 2 cut(s) 1161, 1254
BspT104I TTCGAA 1 cut(s) 892
BspT107I GGYRCC 1 cut(s) 348
BsrI ACTGG 3 cut(s) 447, 1396, 1555
BssECI CCNNGG 4 cut(s) 33, 180, 658, 659
BssMI GATC 3 cut(s) 571, 678, 1439
BssNI GRCGYC 1 cut(s) 936
BssSI CACGAG 1 cut(s) 1236
BssT1I CCWWGG 2 cut(s) 33, 180
Bst2BI CACGAG 1 cut(s) 1236
Bst2UI CCWGG 5 cut(s) 213, 321, 362, 660, 1335
Bst4CI ACNGT 7 cut(s) 89, 777, 1051, 1138, 1228, 1354, 1411
Bst6I CTCTTC 6 cut(s) 534, 576, 1074, 1161, 1254, 1395
BstACI GRCGYC 1 cut(s) 936
BstBI TTCGAA 1 cut(s) 892
BstC8I GCNNGC 2 cut(s) 630, 1039
BstDEI CTNAG 9 cut(s) 250, 273, 279, 311, 528, 675, 1101, 1191, 1296
BstF5I GGATG 6 cut(s) 145, 302, 433, 442, 790, 917
BstFNI CGCG 1 cut(s) 1185
BstKTI GATC 3 cut(s) 574, 681, 1442
BstMAI GTCTC 2 cut(s) 1169, 1487
BstMBI GATC 3 cut(s) 571, 678, 1439
BstNI CCWGG 5 cut(s) 213, 321, 362, 660, 1335
BstNSI RCATGY 1 cut(s) 1162
BstSCI CCNGG 5 cut(s) 211, 319, 360, 658, 1333
BstSFI CTRYAG 1 cut(s) 1410
BstSLI GKGCMC 1 cut(s) 353
BstUI CGCG 1 cut(s) 1185
BstV1I GCAGC 2 cut(s) 82, 586
BstV2I GAAGAC 4 cut(s) 48, 189, 671, 1091
BstX2I RGATCY 2 cut(s) 678, 1439
BstYI RGATCY 2 cut(s) 678, 1439
BsuI GTATCC 1 cut(s) 1399
BsuRI GGCC 1 cut(s) 1037
BtsCI GGATG 6 cut(s) 145, 302, 433, 442, 790, 917
BtsI GCAGTG 1 cut(s) 1545
BtsIMutI CAGTG 7 cut(s) 454, 1056, 1233, 1359, 1389, 1545, 1548
Cac8I GCNNGC 2 cut(s) 630, 1039
Cfr13I GGNCC 3 cut(s) 1035, 1331, 1357
CseI GACGC 2 cut(s) 944, 1504
CsiI ACCWGGT 1 cut(s) 1333
CviAII CATG 8 cut(s) 104, 158, 393, 1072, 1159, 1252, 1313, 1474
DdeI CTNAG 9 cut(s) 250, 273, 279, 311, 528, 675, 1101, 1191, 1296
DpnI GATC 3 cut(s) 573, 680, 1441
DpnII GATC 3 cut(s) 571, 678, 1439
DraI TTTAAA 1 cut(s) 822
DraIII CACNNNGTG 1 cut(s) 859
Eam1104I CTCTTC 6 cut(s) 534, 576, 1074, 1161, 1254, 1395
EarI CTCTTC 6 cut(s) 534, 576, 1074, 1161, 1254, 1395
Eco130I CCWWGG 2 cut(s) 33, 180
Eco47I GGWCC 2 cut(s) 1331, 1357
Eco57I CTGAAG 4 cut(s) 261, 318, 579, 1419
EcoRI GAATTC 1 cut(s) 962
EcoRII CCWGG 5 cut(s) 211, 319, 360, 658, 1333
EcoT14I CCWWGG 2 cut(s) 33, 180
ErhI CCWWGG 2 cut(s) 33, 180
Esp3I CGTCTC 1 cut(s) 1487
FaeI CATG 8 cut(s) 107, 161, 396, 1075, 1162, 1255, 1316, 1477
FalI AAGNNNNNCTT 2 cut(s) 834, 866
FaqI GGGAC 1 cut(s) 71
FatI CATG 8 cut(s) 103, 157, 392, 1071, 1158, 1251, 1312, 1473
FblI GTMKAC 2 cut(s) 1068, 1155
Fnu4HI GCNGC 3 cut(s) 71, 600, 1293
FokI GGATG 6 cut(s) 152, 309, 429, 440, 777, 904
Fsp4HI GCNGC 3 cut(s) 71, 600, 1293
FspBI CTAG 7 cut(s) 629, 750, 857, 900, 1059, 1499, 1565
GluI GCNGC 3 cut(s) 71, 600, 1293
GsuI CTGGAG 2 cut(s) 234, 342
HaeIII GGCC 1 cut(s) 1037
HgaI GACGC 2 cut(s) 944, 1504
Hin1I GRCGYC 1 cut(s) 936
Hin1II CATG 8 cut(s) 107, 161, 396, 1075, 1162, 1255, 1316, 1477
HincII GTYRAC 4 cut(s) 342, 380, 1156, 1249
HindII GTYRAC 4 cut(s) 342, 380, 1156, 1249
HinfI GANTC 5 cut(s) 44, 194, 338, 553, 653
HphI GGTGA 7 cut(s) 214, 217, 605, 845, 1150, 1210, 1502
Hpy166II GTNNAC 7 cut(s) 205, 342, 380, 1069, 1156, 1249, 1357
Hpy188I TCNGA 6 cut(s) 241, 312, 337, 498, 773, 1399
Hpy188III TCNNGA 6 cut(s) 425, 488, 557, 995, 1385, 1443
Hpy8I GTNNAC 7 cut(s) 205, 342, 380, 1069, 1156, 1249, 1357
Hpy99I CGWCG 3 cut(s) 11, 14, 194
HpyAV CCTTC 9 cut(s) 342, 396, 615, 797, 1012, 1099, 1189, 1477, 1578
HpyCH4III ACNGT 7 cut(s) 89, 777, 1051, 1138, 1228, 1354, 1411
HpyCH4IV ACGT 1 cut(s) 51
HpyCH4V TGCA 7 cut(s) 25, 266, 917, 1128, 1218, 1312, 1454
HpyF3I CTNAG 9 cut(s) 250, 273, 279, 311, 528, 675, 1101, 1191, 1296
HpySE526I ACGT 1 cut(s) 51
Hsp92I GRCGYC 1 cut(s) 936
Hsp92II CATG 8 cut(s) 107, 161, 396, 1075, 1162, 1255, 1316, 1477
Kzo9I GATC 3 cut(s) 571, 678, 1439
LguI GCTCTTC 2 cut(s) 1161, 1254
LmnI GCTCC 2 cut(s) 607, 1426
Lsp1109I GCAGC 2 cut(s) 82, 586
LweI GCATC 2 cut(s) 514, 926
MabI ACCWGGT 1 cut(s) 1333
MaeI CTAG 7 cut(s) 629, 750, 857, 900, 1059, 1499, 1565
MaeII ACGT 1 cut(s) 51
MaeIII GTNAC 2 cut(s) 146, 223
MalI GATC 3 cut(s) 573, 680, 1441
MboI GATC 3 cut(s) 571, 678, 1439
MflI RGATCY 2 cut(s) 678, 1439
MhlI GDGCHC 1 cut(s) 353
MluCI AATT 4 cut(s) 411, 834, 962, 1306
MlyI GAGTC 3 cut(s) 38, 203, 347
MmeI TCCRAC 3 cut(s) 966, 1309, 1460
MroXI GAANNNNTTC 3 cut(s) 174, 552, 1273
MseI TTAA 1 cut(s) 821
MslI CAYNNNNRTG 3 cut(s) 90, 162, 447
MspA1I CMGCKG 1 cut(s) 1295
MspR9I CCNGG 5 cut(s) 213, 321, 362, 660, 1335
Mva1269I GAATGC 1 cut(s) 1375
MvaI CCWGG 5 cut(s) 213, 321, 362, 660, 1335
MvnI CGCG 1 cut(s) 1185
NdeII GATC 3 cut(s) 571, 678, 1439
NheI GCTAGC 1 cut(s) 628
NlaIII CATG 8 cut(s) 107, 161, 396, 1075, 1162, 1255, 1316, 1477
NlaIV GGNNCC 3 cut(s) 30, 350, 366
NmeAIII GCCGAG 1 cut(s) 826
NmuCI GTSAC 1 cut(s) 223
NspI RCATGY 1 cut(s) 1162
NspV TTCGAA 1 cut(s) 892
OliI CACNNNNGTG 1 cut(s) 90
PasI CCCWGGG 1 cut(s) 659
PciI ACATGT 1 cut(s) 1158
PciSI GCTCTTC 2 cut(s) 1161, 1254
PctI GAATGC 1 cut(s) 1375
PdmI GAANNNNTTC 3 cut(s) 174, 552, 1273
PfeI GAWTC 2 cut(s) 553, 653
PflFI GACNNNGTC 1 cut(s) 1335
PflMI CCANNNNNTGG 1 cut(s) 116
PfoI TCCNGGA 2 cut(s) 211, 319
PkrI GCNGC 3 cut(s) 72, 601, 1294
PleI GAGTC 3 cut(s) 38, 202, 346
PpsI GAGTC 3 cut(s) 38, 202, 346
PscI ACATGT 1 cut(s) 1158
PsiI TTATAA 1 cut(s) 435
Psp6I CCWGG 5 cut(s) 211, 319, 360, 658, 1333
PspGI CCWGG 5 cut(s) 211, 319, 360, 658, 1333
PspN4I GGNNCC 3 cut(s) 30, 350, 366
PspPI GGNCC 3 cut(s) 1035, 1331, 1357
PsuI RGATCY 2 cut(s) 678, 1439
PsyI GACNNNGTC 1 cut(s) 1335
RseI CAYNNNNRTG 3 cut(s) 90, 162, 447
SalI GTCGAC 1 cut(s) 1154
SapI GCTCTTC 2 cut(s) 1161, 1254
SaqAI TTAA 1 cut(s) 821
SatI GCNGC 3 cut(s) 71, 600, 1293
Sau3AI GATC 3 cut(s) 571, 678, 1439
Sau96I GGNCC 3 cut(s) 1035, 1331, 1357
SchI GAGTC 3 cut(s) 38, 203, 347
ScrFI CCNGG 5 cut(s) 213, 321, 362, 660, 1335
SduI GDGCHC 1 cut(s) 353
SexAI ACCWGGT 1 cut(s) 1333
SfaNI GCATC 2 cut(s) 514, 926
SfcI CTRYAG 1 cut(s) 1410
SfuI TTCGAA 1 cut(s) 892
SinI GGWCC 2 cut(s) 1331, 1357
SmiMI CAYNNNNRTG 3 cut(s) 90, 162, 447
Sse9I AATT 4 cut(s) 411, 834, 962, 1306
SsiI CCGC 1 cut(s) 1293
SspMI CTAG 7 cut(s) 629, 750, 857, 900, 1059, 1499, 1565
StyD4I CCNGG 5 cut(s) 211, 319, 360, 658, 1333
StyI CCWWGG 2 cut(s) 33, 180
TaaI ACNGT 7 cut(s) 89, 777, 1051, 1138, 1228, 1354, 1411
TaiI ACGT 1 cut(s) 54
TaqI TCGA 3 cut(s) 651, 892, 1155
TasI AATT 4 cut(s) 411, 834, 962, 1306
TauI GCSGC 1 cut(s) 1295
TfiI GAWTC 2 cut(s) 553, 653
Tru1I TTAA 1 cut(s) 821
Tru9I TTAA 1 cut(s) 821
TscAI CASTG 7 cut(s) 454, 1056, 1233, 1359, 1396, 1545, 1555
TseFI GTSAC 1 cut(s) 223
TseI GCWGC 2 cut(s) 70, 599
Tsp45I GTSAC 1 cut(s) 223
TspDTI ATGAA 5 cut(s) 174, 753, 779, 1257, 1266
TspGWI ACGGA 1 cut(s) 1382
TspRI CASTG 7 cut(s) 454, 1056, 1233, 1359, 1396, 1545, 1555
Tth111I GACNNNGTC 1 cut(s) 1335
Van91I CCANNNNNTGG 1 cut(s) 116
VpaK11BI GGWCC 2 cut(s) 1331, 1357
XapI RAATTY 2 cut(s) 962, 1306
XceI RCATGY 1 cut(s) 1162
XcmI CCANNNNNNNNNTGG 3 cut(s) 89, 117, 954
XmiI GTMKAC 2 cut(s) 1068, 1155
XmnI GAANNNNTTC 3 cut(s) 174, 552, 1273
XspI CTAG 7 cut(s) 629, 750, 857, 900, 1059, 1499, 1565
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.