RLG00000004306

G-patch domain

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr1
Physical Location & Seq
Reverse (-)
58156886 .. 58159550
2665 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000004306

Sequence Viewer

Length: 1278 bp
ATGGAGAGTCCGATTGCCACCGGATTACCCGACTCCCAGAACCCGGAAAATTCCTTCGTCTGGGACGAACAGTCTCAGCTCTACTTTCATGCCAGTACCGGATTCTACCATGACCCCAACGCTGGCTGGTACTACAGCACTCGCGACGGCCTTTATTACAAGTTCGAAGATGGAAACTACGTTCTTCTTCCCTCTCACCAGGGTAATAGTTTGGAAACCAGTCATGGCCAAATGGGTGCCACTGAGAATCCCAGTCAAGAAGAGCCCTTTTCAGCTGTAGGCAATACAGAGTGCAGTAGCAGTGATGCACCTGAAAACCACCCTCCTCCCTCGGAATGGCTAGAGGATACGCTTATTGAACTATATTTGTCTGGTTATTCCAACTTAGAAGCCAATGCTGGTGATCATGATATGGCAGTGTACCCCGAAACATTTGTACCTGATGGGAACAATGATGGTGGTTCATGGGATGAAGAGAACTGGCGAGCTCAGTATGGTCAGGTCGTTCAAGGTGCAGAAGTGCCAATCCCAGAGTCTTCACTGATAAGTTTATGGGACTGGGAAATGGTCACAAAGCCAAAAAATGGTGGAAAATGTGAGGTACCAAGGCCAAGGCTTGTTGGGAGGTTAGCGAAGCAGTCTGCTAAGCTTCATCCTTCTCTGCCGTCTGGTGGTGGTCTTTTAAAAACTGCTCCAATCTGTGAAGTGCATCTTGACCTGGTACGAGTCACAACAGGACAAGTTTATAAATTGAGGACTCCCAGTAAACAATATTTGGCCTCCTTATCAACTTATGATTCTTCGAACCCAACCAAGGATTGGGGCTTCCCAGAATTATCAGACAACAGAGAAGTCCTTCCGCACCCTAAATCCAGCGTAAGAGGTGATTCCAAAACTGCAGATGTAATGGCATTCGGCAGGGGTTCATCGTCGTTGCCAGGTGCAGCACATGAAAAGCTTGAAAGCTATCAATATAGGGATAGAGCTGCTGATAGAAGAGCCTTGCATGGTGGTTTTGGTGTGGGTCCAGGACAGAAGAATTCAGTAGATGGTGATAGTGATCGGCCAACACCCTCCACAGAGGAGGCTGCAGCAGAGGCCTTGAATATGTCATTTGGAGCTGGAAGTTACGCCCGGAAAGTTTTAGAAAGCATGGGCTGGAAGGAGGGGGAGACGCTCGGCAAGACTACAAAGGGATTGGTTGAACCTATTCAAGCACAAGGCAACATTGGTAGTGCTGGATTAGGGTGGCCTCGGGGAAGATTAAACCATCTTTGA

Protein Analysis

426

Amino Acids

46.28

Weight (kDa)

4.98

Isoelectric Point (pI)

41.6

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
OCRE PF17780 16 - 56 2.6e-08 OCRE domain
G-patch PF01585 377 - 416 2.5e-11 G-patch domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 747
Acc65I GGTACC 1 cut(s) 601
AccB1I GGYRCC 2 cut(s) 236, 601
AccB7I CCANNNNNTGG 2 cut(s) 584, 819
AccII CGCG 1 cut(s) 144
AciI CCGC 1 cut(s) 860
AcoI YGGCCR 2 cut(s) 226, 1064
AcsI RAATTY 2 cut(s) 49, 1039
AfaI GTAC 6 cut(s) 97, 131, 422, 438, 603, 723
AfiI CCNNNNNNNGG 8 cut(s) 43, 60, 122, 336, 584, 671, 814, 819
AgsI TTSAA 6 cut(s) 359, 509, 962, 1105, 1205, 1214
AhdI GACNNNNNGTC 1 cut(s) 70
AjnI CCWGG 4 cut(s) 198, 717, 937, 1027
AloI GAACNNNNNNTCC 2 cut(s) 165, 197
AluBI AGCT 8 cut(s) 79, 275, 488, 649, 958, 966, 986, 1121
AluI AGCT 8 cut(s) 79, 275, 488, 649, 958, 966, 986, 1121
Alw21I GWGCWC 1 cut(s) 490
Alw26I GTCTC 2 cut(s) 78, 1166
Ama87I CYCGRG 1 cut(s) 1254
AoxI GGCC 7 cut(s) 148, 226, 608, 777, 1064, 1098, 1250
ApeKI GCWGC 4 cut(s) 944, 986, 1088, 1091
ApoI RAATTY 2 cut(s) 49, 1039
Asp700I GAANNNNTTC 2 cut(s) 855, 1209
Asp718I GGTACC 1 cut(s) 601
AspS9I GGNCC 1 cut(s) 1025
AsuC2I CCSGG 2 cut(s) 44, 1135
AsuHPI GGTGA 4 cut(s) 188, 413, 896, 1064
AsuII TTCGAA 2 cut(s) 165, 803
AvaI CYCGRG 1 cut(s) 1254
AvaII GGWCC 1 cut(s) 1025
BaeI ACNNNNGTAYC 2 cut(s) 420, 453
BalI TGGCCA 1 cut(s) 228
BanI GGYRCC 2 cut(s) 236, 601
BanII GRGCYC 2 cut(s) 267, 490
BbsI GAAGAC 1 cut(s) 528
Bbv12I GWGCWC 1 cut(s) 490
BbvI GCAGC 4 cut(s) 956, 973, 1075, 1103
BccI CCATC 4 cut(s) 164, 437, 449, 1043
BceAI ACGGC 2 cut(s) 163, 649
BciT130I CCWGG 4 cut(s) 200, 719, 939, 1029
BciVI GTATCC 1 cut(s) 340
BclI TGATCA 1 cut(s) 403
BcnI CCSGG 2 cut(s) 44, 1135
BcoDI GTCTC 2 cut(s) 78, 1166
BfaI CTAG 1 cut(s) 341
BfmI CTRYAG 4 cut(s) 133, 276, 897, 1089
BfuI GTATCC 1 cut(s) 340
BisI GCNGC 4 cut(s) 945, 987, 1089, 1092
BlpI GCTNAGC 1 cut(s) 645
BlsI GCNGC 4 cut(s) 946, 988, 1090, 1093
Bme1390I CCNGG 6 cut(s) 44, 200, 719, 939, 1029, 1135
Bme18I GGWCC 1 cut(s) 1025
BmeRI GACNNNNNGTC 1 cut(s) 70
BmeT110I CYCGRG 1 cut(s) 1254
BmgT120I GGNCC 1 cut(s) 1025
BmiI GGNNCC 3 cut(s) 238, 603, 1026
BmrFI CCNGG 6 cut(s) 44, 200, 719, 939, 1029, 1135
BmrI ACTGGG 3 cut(s) 246, 568, 756
BmsI GCATC 2 cut(s) 295, 718
BmuI ACTGGG 3 cut(s) 246, 568, 756
BpiI GAAGAC 1 cut(s) 528
Bpu1102I GCTNAGC 1 cut(s) 645
Bpu14I TTCGAA 2 cut(s) 165, 803
BpuMI CCSGG 2 cut(s) 44, 1135
BsaBI GATNNNNATC 1 cut(s) 1059
BsaJI CCNNGG 6 cut(s) 199, 330, 605, 611, 813, 1253
BsaWI WCCGGW 2 cut(s) 20, 98
Bsc4I CCNNNNNNNGG 8 cut(s) 43, 60, 122, 336, 584, 671, 814, 819
Bse1I ACTGG 6 cut(s) 93, 219, 252, 485, 563, 762
Bse8I GATNNNNATC 1 cut(s) 1059
BseBI CCWGG 4 cut(s) 200, 719, 939, 1029
BseDI CCNNGG 6 cut(s) 199, 330, 605, 611, 813, 1253
BseGI GGATG 2 cut(s) 475, 652
BseJI GATNNNNATC 1 cut(s) 1059
BseLI CCNNNNNNNGG 8 cut(s) 43, 60, 122, 336, 584, 671, 814, 819
BseMII CTCAG 3 cut(s) 89, 234, 503
BseNI ACTGG 6 cut(s) 93, 219, 252, 485, 563, 762
BseRI GAGGAG 2 cut(s) 315, 1097
BseXI GCAGC 4 cut(s) 956, 973, 1075, 1103
BsgI GTGCAG 3 cut(s) 313, 534, 963
Bsh1236I CGCG 1 cut(s) 144
BshFI GGCC 7 cut(s) 150, 228, 610, 779, 1066, 1100, 1252
BshNI GGYRCC 2 cut(s) 236, 601
BsiHKAI GWGCWC 1 cut(s) 490
BsiHKCI CYCGRG 1 cut(s) 1254
BsiSI CCGG 4 cut(s) 21, 44, 99, 1135
BslFI GGGAC 2 cut(s) 77, 569
BslI CCNNNNNNNGG 8 cut(s) 43, 60, 122, 336, 584, 671, 814, 819
BsmAI GTCTC 2 cut(s) 78, 1166
BsmBI CGTCTC 1 cut(s) 1166
BsmFI GGGAC 2 cut(s) 77, 569
BsmI GAATGC 1 cut(s) 911
BsnI GGCC 7 cut(s) 150, 228, 610, 779, 1066, 1100, 1252
BsoBI CYCGRG 1 cut(s) 1254
Bsp119I TTCGAA 2 cut(s) 165, 803
Bsp1286I GDGCHC 2 cut(s) 267, 490
Bsp143I GATC 2 cut(s) 403, 1060
Bsp1720I GCTNAGC 1 cut(s) 645
Bsp68I TCGCGA 1 cut(s) 144
BspACI CCGC 1 cut(s) 860
BspANI GGCC 7 cut(s) 150, 228, 610, 779, 1066, 1100, 1252
BspCNI CTCAG 3 cut(s) 88, 235, 502
BspFNI CGCG 1 cut(s) 144
BspHI TCATGA 1 cut(s) 406
BspLI GGNNCC 3 cut(s) 238, 603, 1026
BspMAI CTGCAG 2 cut(s) 901, 1093
BspQI GCTCTTC 2 cut(s) 255, 991
BspT104I TTCGAA 2 cut(s) 165, 803
BspT107I GGYRCC 2 cut(s) 236, 601
BsrI ACTGG 6 cut(s) 93, 219, 252, 485, 563, 762
BssECI CCNNGG 6 cut(s) 199, 330, 605, 611, 813, 1253
BssMI GATC 2 cut(s) 403, 1060
BssT1I CCWWGG 3 cut(s) 605, 611, 813
Bst2UI CCWGG 4 cut(s) 200, 719, 939, 1029
Bst4CI ACNGT 1 cut(s) 72
Bst6I CTCTTC 3 cut(s) 255, 468, 991
BstBI TTCGAA 2 cut(s) 165, 803
BstC8I GCNNGC 2 cut(s) 124, 486
BstDEI CTNAG 5 cut(s) 75, 243, 385, 489, 645
BstF5I GGATG 2 cut(s) 475, 652
BstFNI CGCG 1 cut(s) 144
BstKTI GATC 2 cut(s) 406, 1063
BstMAI GTCTC 2 cut(s) 78, 1166
BstMBI GATC 2 cut(s) 403, 1060
BstMWI GCNNNNNNNGC 1 cut(s) 1097
BstNI CCWGG 4 cut(s) 200, 719, 939, 1029
BstSCI CCNGG 6 cut(s) 42, 198, 717, 937, 1027, 1133
BstSFI CTRYAG 4 cut(s) 133, 276, 897, 1089
BstUI CGCG 1 cut(s) 144
BstV1I GCAGC 4 cut(s) 956, 973, 1075, 1103
BstV2I GAAGAC 1 cut(s) 528
BsuI GTATCC 1 cut(s) 340
BsuRI GGCC 7 cut(s) 150, 228, 610, 779, 1066, 1100, 1252
BtsCI GGATG 2 cut(s) 475, 652
BtsI GCAGTG 2 cut(s) 307, 423
BtsIMutI CAGTG 4 cut(s) 240, 307, 423, 539
BtuMI TCGCGA 1 cut(s) 144
Cac8I GCNNGC 2 cut(s) 124, 486
CciI TCATGA 1 cut(s) 406
Cfr13I GGNCC 1 cut(s) 1025
CseI GACGC 1 cut(s) 1183
CsiI ACCWGGT 1 cut(s) 717
Csp6I GTAC 6 cut(s) 96, 130, 421, 437, 602, 722
CspCI CAANNNNNGTGG 2 cut(s) 439, 474
CviAII CATG 8 cut(s) 89, 110, 224, 407, 465, 950, 1007, 1153
CviQI GTAC 6 cut(s) 96, 130, 421, 437, 602, 722
DdeI CTNAG 5 cut(s) 75, 243, 385, 489, 645
DpnI GATC 2 cut(s) 405, 1062
DpnII GATC 2 cut(s) 403, 1060
DraI TTTAAA 1 cut(s) 684
DriI GACNNNNNGTC 1 cut(s) 70
EaeI YGGCCR 2 cut(s) 226, 1064
Eam1104I CTCTTC 3 cut(s) 255, 468, 991
Eam1105I GACNNNNNGTC 1 cut(s) 70
EarI CTCTTC 3 cut(s) 255, 468, 991
Ecl136II GAGCTC 1 cut(s) 488
Eco130I CCWWGG 3 cut(s) 605, 611, 813
Eco147I AGGCCT 1 cut(s) 1100
Eco24I GRGCYC 2 cut(s) 267, 490
Eco47I GGWCC 1 cut(s) 1025
Eco53kI GAGCTC 1 cut(s) 488
Eco88I CYCGRG 1 cut(s) 1254
EcoICRI GAGCTC 1 cut(s) 488
EcoRI GAATTC 1 cut(s) 1039
EcoRII CCWGG 4 cut(s) 198, 717, 937, 1027
EcoT14I CCWWGG 3 cut(s) 605, 611, 813
EcoT38I GRGCYC 2 cut(s) 267, 490
ErhI CCWWGG 3 cut(s) 605, 611, 813
Esp3I CGTCTC 1 cut(s) 1166
FaeI CATG 8 cut(s) 92, 113, 227, 410, 468, 953, 1010, 1156
FalI AAGNNNNNCTT 2 cut(s) 696, 728
FaqI GGGAC 2 cut(s) 77, 569
FatI CATG 8 cut(s) 88, 109, 223, 406, 464, 949, 1006, 1152
FbaI TGATCA 1 cut(s) 403
Fnu4HI GCNGC 4 cut(s) 945, 987, 1089, 1092
FokI GGATG 2 cut(s) 482, 639
FriOI GRGCYC 2 cut(s) 267, 490
Fsp4HI GCNGC 4 cut(s) 945, 987, 1089, 1092
FspBI CTAG 1 cut(s) 341
GluI GCNGC 4 cut(s) 945, 987, 1089, 1092
HaeIII GGCC 7 cut(s) 150, 228, 610, 779, 1066, 1100, 1252
HapII CCGG 4 cut(s) 21, 44, 99, 1135
HgaI GACGC 1 cut(s) 1183
Hin1II CATG 8 cut(s) 92, 113, 227, 410, 468, 953, 1010, 1156
HindIII AAGCTT 2 cut(s) 647, 956
HinfI GANTC 9 cut(s) 7, 32, 102, 247, 533, 726, 757, 797, 887
HpaII CCGG 4 cut(s) 21, 44, 99, 1135
HphI GGTGA 4 cut(s) 188, 413, 896, 1064
Hpy166II GTNNAC 2 cut(s) 421, 767
Hpy188I TCNGA 3 cut(s) 12, 334, 841
Hpy188III TCNNGA 4 cut(s) 143, 257, 407, 713
Hpy8I GTNNAC 2 cut(s) 421, 767
Hpy99I CGWCG 2 cut(s) 149, 934
HpyAV CCTTC 4 cut(s) 64, 666, 866, 1156
HpyCH4III ACNGT 1 cut(s) 72
HpyCH4IV ACGT 1 cut(s) 180
HpyCH4V TGCA 8 cut(s) 294, 308, 515, 709, 899, 944, 1006, 1091
HpyF10VI GCNNNNNNNGC 1 cut(s) 1097
HpyF3I CTNAG 5 cut(s) 75, 243, 385, 489, 645
HpySE526I ACGT 1 cut(s) 180
Hsp92II CATG 8 cut(s) 92, 113, 227, 410, 468, 953, 1010, 1156
KpnI GGTACC 1 cut(s) 605
Ksp22I TGATCA 1 cut(s) 403
Kzo9I GATC 2 cut(s) 403, 1060
LguI GCTCTTC 2 cut(s) 255, 991
LmnI GCTCC 2 cut(s) 697, 1118
Lsp1109I GCAGC 4 cut(s) 956, 973, 1075, 1103
LweI GCATC 2 cut(s) 295, 718
MabI ACCWGGT 1 cut(s) 717
MaeI CTAG 1 cut(s) 341
MaeII ACGT 1 cut(s) 180
MaeIII GTNAC 3 cut(s) 568, 727, 1127
MalI GATC 2 cut(s) 405, 1062
MboI GATC 2 cut(s) 403, 1060
MhlI GDGCHC 2 cut(s) 267, 490
MlsI TGGCCA 1 cut(s) 228
MluCI AATT 4 cut(s) 49, 749, 833, 1039
MluNI TGGCCA 1 cut(s) 228
MlyI GAGTC 5 cut(s) 16, 26, 542, 735, 751
MmeI TCCRAC 1 cut(s) 405
Mox20I TGGCCA 1 cut(s) 228
MroXI GAANNNNTTC 2 cut(s) 855, 1209
MscI TGGCCA 1 cut(s) 228
MseI TTAA 2 cut(s) 683, 1265
Msp20I TGGCCA 1 cut(s) 228
MspA1I CMGCKG 1 cut(s) 275
MspI CCGG 4 cut(s) 21, 44, 99, 1135
MspR9I CCNGG 6 cut(s) 44, 200, 719, 939, 1029, 1135
Mva1269I GAATGC 1 cut(s) 911
MvaI CCWGG 4 cut(s) 200, 719, 939, 1029
MvnI CGCG 1 cut(s) 144
MwoI GCNNNNNNNGC 1 cut(s) 1097
NciI CCSGG 2 cut(s) 44, 1135
NdeII GATC 2 cut(s) 403, 1060
NlaIII CATG 8 cut(s) 92, 113, 227, 410, 468, 953, 1010, 1156
NlaIV GGNNCC 3 cut(s) 238, 603, 1026
NmeAIII GCCGAG 1 cut(s) 1158
NmuCI GTSAC 2 cut(s) 568, 727
NruI TCGCGA 1 cut(s) 144
NspV TTCGAA 2 cut(s) 165, 803
PagI TCATGA 1 cut(s) 406
PceI AGGCCT 1 cut(s) 1100
PciSI GCTCTTC 2 cut(s) 255, 991
PcsI WCGNNNNNNNCGW 1 cut(s) 63
PctI GAATGC 1 cut(s) 911
PdmI GAANNNNTTC 2 cut(s) 855, 1209
PfeI GAWTC 4 cut(s) 102, 247, 797, 887
PflMI CCANNNNNTGG 2 cut(s) 584, 819
PfoI TCCNGGA 1 cut(s) 1027
PkrI GCNGC 4 cut(s) 946, 988, 1090, 1093
PleI GAGTC 5 cut(s) 15, 26, 541, 734, 751
PpsI GAGTC 5 cut(s) 15, 26, 541, 734, 751
PsiI TTATAA 1 cut(s) 747
Psp124BI GAGCTC 1 cut(s) 490
Psp6I CCWGG 4 cut(s) 198, 717, 937, 1027
PspGI CCWGG 4 cut(s) 198, 717, 937, 1027
PspN4I GGNNCC 3 cut(s) 238, 603, 1026
PspPI GGNCC 1 cut(s) 1025
PstI CTGCAG 2 cut(s) 901, 1093
PvuII CAGCTG 1 cut(s) 275
RruI TCGCGA 1 cut(s) 144
RsaI GTAC 6 cut(s) 97, 131, 422, 438, 603, 723
RsaNI GTAC 6 cut(s) 96, 130, 421, 437, 602, 722
SacI GAGCTC 1 cut(s) 490
SapI GCTCTTC 2 cut(s) 255, 991
SaqAI TTAA 2 cut(s) 683, 1265
SatI GCNGC 4 cut(s) 945, 987, 1089, 1092
Sau3AI GATC 2 cut(s) 403, 1060
Sau96I GGNCC 1 cut(s) 1025
SchI GAGTC 5 cut(s) 16, 26, 542, 735, 751
ScrFI CCNGG 6 cut(s) 44, 200, 719, 939, 1029, 1135
SduI GDGCHC 2 cut(s) 267, 490
SexAI ACCWGGT 1 cut(s) 717
SfaNI GCATC 2 cut(s) 295, 718
SfcI CTRYAG 4 cut(s) 133, 276, 897, 1089
SfuI TTCGAA 2 cut(s) 165, 803
SinI GGWCC 1 cut(s) 1025
Sse9I AATT 4 cut(s) 49, 749, 833, 1039
SseBI AGGCCT 1 cut(s) 1100
SsiI CCGC 1 cut(s) 860
SspI AATATT 1 cut(s) 773
SspMI CTAG 1 cut(s) 341
SstI GAGCTC 1 cut(s) 490
StuI AGGCCT 1 cut(s) 1100
StyD4I CCNGG 6 cut(s) 42, 198, 717, 937, 1027, 1133
StyI CCWWGG 3 cut(s) 605, 611, 813
TaaI ACNGT 1 cut(s) 72
TaiI ACGT 1 cut(s) 183
TaqI TCGA 2 cut(s) 165, 803
TasI AATT 4 cut(s) 49, 749, 833, 1039
TfiI GAWTC 4 cut(s) 102, 247, 797, 887
Tru1I TTAA 2 cut(s) 683, 1265
Tru9I TTAA 2 cut(s) 683, 1265
TscAI CASTG 4 cut(s) 247, 307, 423, 546
TseFI GTSAC 2 cut(s) 568, 727
TseI GCWGC 4 cut(s) 944, 986, 1088, 1091
Tsp45I GTSAC 2 cut(s) 568, 727
TspDTI ATGAA 6 cut(s) 77, 453, 486, 641, 915, 966
TspRI CASTG 4 cut(s) 247, 307, 423, 546
Van91I CCANNNNNTGG 2 cut(s) 584, 819
VpaK11BI GGWCC 1 cut(s) 1025
XapI RAATTY 2 cut(s) 49, 1039
XcmI CCANNNNNNNNNTGG 1 cut(s) 816
XmnI GAANNNNTTC 2 cut(s) 855, 1209
XspI CTAG 1 cut(s) 341
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.