Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0013925.1

Orthogroup ID

OG0002849

Physical Location & Seq

Genomic Coordinates Forward (+)

1 .. 1474

Gene Structure 1474 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0013925.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 743 bp

cacctcacactgtcgcagccacgacccgtccagcttcgatctccgcagccacgatcacaccactggggatccaaacagcaaggcaacgccgccacaaacacgccaagatggagaaaaatgaacccccgatccagggccacatgcctcaccccgacatcgagccagacctgtggcgccgccatccgggttcgatcaccagatcagttagcacgaccaccactgtttaccatcccagccagaacaatccgtcaagccccgagcaaaacaaaccattcgatggctcccccagagcaatagttatccaatacccgtccggcagccgacctcatgacgacagcgaggctcagaggccagcctgcacgtccgggcgccgccggacgagaatgatttcgcagatcagaggaccggcctttaggaggattactgcttctatcagaaaagagaaaatcattgtcaccatcatgagtactagttcaagagcaagcaaggccattgtggcagcaagtgttggagttgtggaggcattgaaggaccaaggcatttgcaggtggaactcacccaccataagatccgtccatcaacaagccaagaaccatttcaggtctttttctcaggccaacaagaacaagctatcatcttcttcgacctcagctttgagcaaagtcaggaatgagaagcatatgaagtcagaggagtctttgaggactgtcatgtacttgagctgctggggtcccaataactag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF3774

Protein Analysis

246

Amino Acids

27.32

Weight (kDa)

11.05

Isoelectric Point (pI)

75.28

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002849)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G34140 AT4G34140 AT4G34140 AT4G34140 AT4G34140 AT4G34140 AT4G34140 AT4G34140 AT4G34140 AT4G34140
fragaria_vesca	FvH4_5g05850 FvH4_5g05850 FvH4_5g05850 FvH4_5g05850 FvH4_5g05850 FvH4_5g05850 FvH4_5g05850 FvH4_5g05850 FvH4_5g05850 FvH4_5g05850
malus_domestica	MD14G1175400.v1.1
prunus_persica	Prupe.5G169300_v2.0.a1 Prupe.5G169300_v2.0.a1 Prupe.5G169300_v2.0.a1 Prupe.5G169300_v2.0.a1
pyrus_communis	pycom14g14640
rosa_chinensis	RchiOBHm_Chr7g0192971
rosa_laevigata	RLG00000004306
rosa_multiflora	Rmu_sc0002040.1_g000065 Rmu_sc0013925.1_g000001
rosa_roxburghii	Rroxscaffold_3G00231200 Rroxscaffold_3G00262490
rosa_rugosa	Rorug07G0006900
rosa_samantha	Rh4DG172700 Rh7AG131900 Rh7BG132700 Rh7CG135900 Rh7DG133800
rosa_wichuraiana	Rw7G011250

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	536
Acc36I	ACCTGC	1 cut(s)	536
AccB1I	GGYRCC	2 cut(s)	173, 368
AccB7I	CCANNNNNTGG	1 cut(s)	277
AciI	CCGC	4 cut(s)	44, 90, 177, 372
AclWI	GGATC	4 cut(s)	63, 76, 123, 563
AcyI	GRCGYC	2 cut(s)	174, 369
AfaI	GTAC	2 cut(s)	468, 715
AfiI	CCNNNNNNNGG	5 cut(s)	132, 133, 183, 277, 416
AgsI	TTSAA	2 cut(s)	476, 528
AhlI	ACTAGT	1 cut(s)	469
AjiI	CACGTC	1 cut(s)	362
AjnI	CCWGG	1 cut(s)	131
AjuI	GAANNNNNNNTTGG	2 cut(s)	580, 612
AloI	GAACNNNNNNTCC	2 cut(s)	113, 145
AluBI	AGCT	4 cut(s)	34, 630, 652, 722
AluI	AGCT	4 cut(s)	34, 630, 652, 722
AlwI	GGATC	4 cut(s)	63, 76, 123, 563
Ama87I	CYCGRG	1 cut(s)	256
AoxI	GGCC	5 cut(s)	135, 349, 407, 488, 614
ApeKI	GCWGC	5 cut(s)	16, 46, 317, 499, 722
ArsI	GACNNNNNNTTYG	2 cut(s)	636, 668
Asp700I	GAANNNNTTC	2 cut(s)	387, 595
AspLEI	GCGC	2 cut(s)	176, 371
AspS9I	GGNCC	4 cut(s)	135, 403, 531, 730
AsuC2I	CCSGG	2 cut(s)	185, 366
AsuHPI	GGTGA	4 cut(s)	139, 186, 447, 548
AvaI	CYCGRG	1 cut(s)	256
AvaII	GGWCC	3 cut(s)	403, 531, 730
BamHI	GGATCC	1 cut(s)	68
BanI	GGYRCC	2 cut(s)	173, 368
BbvCI	CCTCAGC	1 cut(s)	648
BbvI	GCAGC	5 cut(s)	28, 58, 329, 511, 709
BccI	CCATC	6 cut(s)	102, 188, 236, 271, 466, 584
BciT130I	CCWGG	1 cut(s)	133
BcnI	CCSGG	2 cut(s)	185, 366
BcuI	ACTAGT	1 cut(s)	469
BfaI	CTAG	2 cut(s)	470, 741
BfoI	RGCGCY	2 cut(s)	177, 372
BfuAI	ACCTGC	1 cut(s)	536
BglI	GCCNNNNNGGC	1 cut(s)	496
BisI	GCNGC	8 cut(s)	17, 47, 90, 177, 318, 372, 500, 723
BlsI	GCNGC	8 cut(s)	18, 48, 91, 178, 319, 373, 501, 724
BmcAI	AGTACT	1 cut(s)	468
Bme1390I	CCNGG	3 cut(s)	133, 185, 366
Bme18I	GGWCC	3 cut(s)	403, 531, 730
BmeT110I	CYCGRG	1 cut(s)	256
BmgBI	CACGTC	1 cut(s)	362
BmgT120I	GGNCC	4 cut(s)	135, 403, 531, 730
BmiI	GGNNCC	6 cut(s)	70, 175, 282, 370, 731, 732
BmrFI	CCNGG	3 cut(s)	133, 185, 366
BmrI	ACTGGG	1 cut(s)	73
BmuI	ACTGGG	1 cut(s)	73
Bpu10I	CCTNAGC	1 cut(s)	648
BpuEI	CTTGAG	1 cut(s)	738
BpuMI	CCSGG	2 cut(s)	185, 366
BsaHI	GRCGYC	2 cut(s)	174, 369
BsaJI	CCNNGG	2 cut(s)	132, 534
Bsc4I	CCNNNNNNNGG	5 cut(s)	132, 133, 183, 277, 416
Bse118I	RCCGGY	1 cut(s)	405
Bse1I	ACTGG	1 cut(s)	68
BseBI	CCWGG	1 cut(s)	133
BseDI	CCNNGG	2 cut(s)	132, 534
BseGI	GGATG	2 cut(s)	180, 228
BseLI	CCNNNNNNNGG	5 cut(s)	132, 133, 183, 277, 416
BseMII	CTCAG	3 cut(s)	358, 625, 662
BseNI	ACTGG	1 cut(s)	68
BseRI	GAGGAG	1 cut(s)	706
BseXI	GCAGC	5 cut(s)	28, 58, 329, 511, 709
BseYI	CCCAGC	2 cut(s)	232, 725
BsgI	GTGCAG	1 cut(s)	342
BshFI	GGCC	5 cut(s)	137, 351, 409, 490, 616
BshNI	GGYRCC	2 cut(s)	173, 368
BsiHKCI	CYCGRG	1 cut(s)	256
BsiSI	CCGG	5 cut(s)	184, 314, 365, 375, 406
BslFI	GGGAC	1 cut(s)	716
BslI	CCNNNNNNNGG	5 cut(s)	132, 133, 183, 277, 416
BsmFI	GGGAC	1 cut(s)	716
BsnI	GGCC	5 cut(s)	137, 351, 409, 490, 616
BsoBI	CYCGRG	1 cut(s)	256
Bsp143I	GATC	8 cut(s)	38, 53, 68, 128, 191, 199, 395, 568
BspACI	CCGC	4 cut(s)	44, 90, 177, 372
BspANI	GGCC	5 cut(s)	137, 351, 409, 490, 616
BspCNI	CTCAG	3 cut(s)	357, 624, 661
BspHI	TCATGA	2 cut(s)	327, 461
BspLI	GGNNCC	6 cut(s)	70, 175, 282, 370, 731, 732
BspMI	ACCTGC	1 cut(s)	536
BspPI	GGATC	4 cut(s)	63, 76, 123, 563
BspT107I	GGYRCC	2 cut(s)	173, 368
BsrFI	RCCGGY	1 cut(s)	405
BsrI	ACTGG	1 cut(s)	68
BssAI	RCCGGY	1 cut(s)	405
BssECI	CCNNGG	2 cut(s)	132, 534
BssMI	GATC	8 cut(s)	38, 53, 68, 128, 191, 199, 395, 568
BssNI	GRCGYC	2 cut(s)	174, 369
BssT1I	CCWWGG	1 cut(s)	534
Bst2UI	CCWGG	1 cut(s)	133
Bst4CI	ACNGT	3 cut(s)	12, 222, 708
BstACI	GRCGYC	2 cut(s)	174, 369
BstC8I	GCNNGC	3 cut(s)	353, 357, 483
BstDEI	CTNAG	3 cut(s)	344, 611, 648
BstENI	CCTNNNNNAGG	1 cut(s)	414
BstF5I	GGATG	2 cut(s)	180, 228
BstH2I	RGCGCY	2 cut(s)	177, 372
BstHHI	GCGC	2 cut(s)	176, 371
BstKTI	GATC	8 cut(s)	41, 56, 71, 131, 194, 202, 398, 571
BstMBI	GATC	8 cut(s)	38, 53, 68, 128, 191, 199, 395, 568
BstMWI	GCNNNNNNNGC	2 cut(s)	487, 496
BstNI	CCWGG	1 cut(s)	133
BstNSI	RCATGY	1 cut(s)	144
BstSCI	CCNGG	3 cut(s)	131, 183, 364
BstV1I	GCAGC	5 cut(s)	28, 58, 329, 511, 709
BstX2I	RGATCY	2 cut(s)	68, 568
BstXI	CCANNNNNNTGG	1 cut(s)	170
BstYI	RGATCY	2 cut(s)	68, 568
BsuRI	GGCC	5 cut(s)	137, 351, 409, 490, 616
BtrI	CACGTC	1 cut(s)	362
BtsCI	GGATG	2 cut(s)	180, 228
BtsIMutI	CAGTG	3 cut(s)	8, 61, 218
BveI	ACCTGC	1 cut(s)	536
Cac8I	GCNNGC	3 cut(s)	353, 357, 483
CciI	TCATGA	2 cut(s)	327, 461
CfoI	GCGC	2 cut(s)	176, 371
Cfr10I	RCCGGY	1 cut(s)	405
Cfr13I	GGNCC	4 cut(s)	135, 403, 531, 730
Csp6I	GTAC	2 cut(s)	467, 714
CviAII	CATG	4 cut(s)	141, 328, 462, 711
CviQI	GTAC	2 cut(s)	467, 714
DdeI	CTNAG	3 cut(s)	344, 611, 648
DinI	GGCGCC	2 cut(s)	175, 370
DpnI	GATC	8 cut(s)	40, 55, 70, 130, 193, 201, 397, 570
DpnII	GATC	8 cut(s)	38, 53, 68, 128, 191, 199, 395, 568
Eco130I	CCWWGG	1 cut(s)	534
Eco47I	GGWCC	3 cut(s)	403, 531, 730
Eco88I	CYCGRG	1 cut(s)	256
EcoNI	CCTNNNNNAGG	1 cut(s)	414
EcoO109I	RGGNCCY	1 cut(s)	730
EcoRII	CCWGG	1 cut(s)	131
EcoT14I	CCWWGG	1 cut(s)	534
EgeI	GGCGCC	2 cut(s)	175, 370
EheI	GGCGCC	2 cut(s)	175, 370
ErhI	CCWWGG	1 cut(s)	534
FaeI	CATG	4 cut(s)	144, 331, 465, 714
FaiI	YATR	7 cut(s)	142, 329, 463, 565, 680, 682, 712
FaqI	GGGAC	1 cut(s)	716
FatI	CATG	4 cut(s)	140, 327, 461, 710
FauNDI	CATATG	1 cut(s)	680
Fnu4HI	GCNGC	8 cut(s)	17, 47, 90, 177, 318, 372, 500, 723
FokI	GGATG	2 cut(s)	167, 215
Fsp4HI	GCNGC	8 cut(s)	17, 47, 90, 177, 318, 372, 500, 723
FspBI	CTAG	2 cut(s)	470, 741
GlaI	GCGC	2 cut(s)	175, 370
GluI	GCNGC	8 cut(s)	17, 47, 90, 177, 318, 372, 500, 723
GsaI	CCCAGC	2 cut(s)	236, 729
HaeII	RGCGCY	2 cut(s)	177, 372
HaeIII	GGCC	5 cut(s)	137, 351, 409, 490, 616
HapII	CCGG	5 cut(s)	184, 314, 365, 375, 406
HhaI	GCGC	2 cut(s)	176, 371
Hin1I	GRCGYC	2 cut(s)	174, 369
Hin1II	CATG	4 cut(s)	144, 331, 465, 714
Hin6I	GCGC	2 cut(s)	174, 369
HinP1I	GCGC	2 cut(s)	174, 369
HinfI	GANTC	1 cut(s)	694
HpaII	CCGG	5 cut(s)	184, 314, 365, 375, 406
HphI	GGTGA	4 cut(s)	139, 186, 447, 548
Hpy166II	GTNNAC	1 cut(s)	225
Hpy188I	TCNGA	4 cut(s)	347, 400, 436, 690
Hpy188III	TCNNGA	4 cut(s)	328, 462, 476, 666
Hpy8I	GTNNAC	1 cut(s)	225
HpyAV	CCTTC	1 cut(s)	522
HpyCH4III	ACNGT	3 cut(s)	12, 222, 708
HpyCH4IV	ACGT	1 cut(s)	361
HpyCH4V	TGCA	2 cut(s)	359, 545
HpyF10VI	GCNNNNNNNGC	2 cut(s)	487, 496
HpyF3I	CTNAG	3 cut(s)	344, 611, 648
HpySE526I	ACGT	1 cut(s)	361
Hsp92I	GRCGYC	2 cut(s)	174, 369
Hsp92II	CATG	4 cut(s)	144, 331, 465, 714
HspAI	GCGC	2 cut(s)	174, 369
KasI	GGCGCC	2 cut(s)	173, 368
KflI	GGGWCCC	1 cut(s)	730
Kzo9I	GATC	8 cut(s)	38, 53, 68, 128, 191, 199, 395, 568
LmnI	GCTCC	1 cut(s)	286
Lsp1109I	GCAGC	5 cut(s)	28, 58, 329, 511, 709
MaeI	CTAG	2 cut(s)	470, 741
MaeII	ACGT	1 cut(s)	361
MaeIII	GTNAC	1 cut(s)	453
MalI	GATC	8 cut(s)	40, 55, 70, 130, 193, 201, 397, 570
MboI	GATC	8 cut(s)	38, 53, 68, 128, 191, 199, 395, 568
MboII	GAAGA	2 cut(s)	629, 632
MflI	RGATCY	2 cut(s)	68, 568
Mly113I	GGCGCC	2 cut(s)	174, 369
MlyI	GAGTC	1 cut(s)	703
MmeI	TCCRAC	1 cut(s)	489
MroXI	GAANNNNTTC	2 cut(s)	387, 595
MslI	CAYNNNNRTG	1 cut(s)	460
MspI	CCGG	5 cut(s)	184, 314, 365, 375, 406
MspR9I	CCNGG	3 cut(s)	133, 185, 366
MvaI	CCWGG	1 cut(s)	133
MwoI	GCNNNNNNNGC	2 cut(s)	487, 496
NarI	GGCGCC	2 cut(s)	174, 369
NciI	CCSGG	2 cut(s)	185, 366
NdeI	CATATG	1 cut(s)	680
NdeII	GATC	8 cut(s)	38, 53, 68, 128, 191, 199, 395, 568
NlaIII	CATG	4 cut(s)	144, 331, 465, 714
NlaIV	GGNNCC	6 cut(s)	70, 175, 282, 370, 731, 732
NmuCI	GTSAC	1 cut(s)	453
NspI	RCATGY	1 cut(s)	144
PagI	TCATGA	2 cut(s)	327, 461
PaqCI	CACCTGC	1 cut(s)	536
PdmI	GAANNNNTTC	2 cut(s)	387, 595
PflMI	CCANNNNNTGG	1 cut(s)	277
PkrI	GCNGC	8 cut(s)	18, 48, 91, 178, 319, 373, 501, 724
PleI	GAGTC	1 cut(s)	702
PluTI	GGCGCC	2 cut(s)	177, 372
PpsI	GAGTC	1 cut(s)	702
PpuMI	RGGWCCY	1 cut(s)	730
Psp5II	RGGWCCY	1 cut(s)	730
Psp6I	CCWGG	1 cut(s)	131
PspFI	CCCAGC	2 cut(s)	232, 725
PspGI	CCWGG	1 cut(s)	131
PspN4I	GGNNCC	6 cut(s)	70, 175, 282, 370, 731, 732
PspPI	GGNCC	4 cut(s)	135, 403, 531, 730
PspPPI	RGGWCCY	1 cut(s)	730
PsuI	RGATCY	2 cut(s)	68, 568
RsaI	GTAC	2 cut(s)	468, 715
RsaNI	GTAC	2 cut(s)	467, 714
RseI	CAYNNNNRTG	1 cut(s)	460
SatI	GCNGC	8 cut(s)	17, 47, 90, 177, 318, 372, 500, 723
Sau3AI	GATC	8 cut(s)	38, 53, 68, 128, 191, 199, 395, 568
Sau96I	GGNCC	4 cut(s)	135, 403, 531, 730
ScaI	AGTACT	1 cut(s)	468
SchI	GAGTC	1 cut(s)	703
ScrFI	CCNGG	3 cut(s)	133, 185, 366
SfoI	GGCGCC	2 cut(s)	175, 370
SinI	GGWCC	3 cut(s)	403, 531, 730
SmiMI	CAYNNNNRTG	1 cut(s)	460
SmlI	CTYRAG	1 cut(s)	717
SmoI	CTYRAG	1 cut(s)	717
SpeI	ACTAGT	1 cut(s)	469
SsiI	CCGC	4 cut(s)	44, 90, 177, 372
SspDI	GGCGCC	2 cut(s)	173, 368
SspMI	CTAG	2 cut(s)	470, 741
StyD4I	CCNGG	3 cut(s)	131, 183, 364
StyI	CCWWGG	1 cut(s)	534
TaaI	ACNGT	3 cut(s)	12, 222, 708
TaiI	ACGT	1 cut(s)	364
TaqI	TCGA	5 cut(s)	37, 158, 190, 275, 643
TatI	WGTACW	2 cut(s)	466, 713
TauI	GCSGC	3 cut(s)	92, 179, 374
TscAI	CASTG	3 cut(s)	15, 68, 225
TseFI	GTSAC	1 cut(s)	453
TseI	GCWGC	5 cut(s)	16, 46, 317, 499, 722
Tsp45I	GTSAC	1 cut(s)	453
TspDTI	ATGAA	2 cut(s)	134, 697
TspGWI	ACGGA	2 cut(s)	236, 561
TspRI	CASTG	3 cut(s)	15, 68, 225
Van91I	CCANNNNNTGG	1 cut(s)	277
VpaK11BI	GGWCC	3 cut(s)	403, 531, 730
XagI	CCTNNNNNAGG	1 cut(s)	414
XceI	RCATGY	1 cut(s)	144
XmnI	GAANNNNTTC	2 cut(s)	387, 595
XspI	CTAG	2 cut(s)	470, 741
ZrmI	AGTACT	1 cut(s)	468

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.