Rw7G011250

G-patch domain

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr7
Physical Location & Seq
Forward (+)
10529771 .. 10532481
2711 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw7G011250.1

Sequence Viewer

Length: 1341 bp
ATGCCAGTACGGGATTCTACCATGACCCCAACGCTGGCTGGTACTACAGCACTCGCGACGGCCTTTATTACAAGTTCGAAGATGGAAACTACGTTCTTCTTCCCTCTCACCAGGTACCCCCTATCCTCCTCTCTTGCGTGTCTCAAAGTTTTGAAATTTATGTTCGGGAGTTTTATTTTTCAGGGTAATAGTTTGGAAACCAGTCATGGCCAAATGGGTGCCACTGAGAATCCCATTCAAGAAGAACCCTTCTCAGCTGTAGGCAATACAGAGTGCAGTAGCAGTGATGCACCTGAAAACCACCCTCCTCCCTCGGAATGGCTAGAGGATACGCTTATTGAACTATATTTGTCTGGTTATTCCAACTTAGAAGCCAATGCTGGCGATCATGATACGGCAGCGTACCCCGAAACATTTGTACCTGATGGGAACAATGATGGTCACGAGCTCAATGAATCCACGCCGATTCCAGAAGACTATGGTGCTGTAATTCAGTCGAGTGAAAATGTCTCTGATGAAGGTGGTTCATGGGATGAAGAGAACTGGCGAGCTCAGTATGGTCAGGTCGTTCAAGATGCAGAAGTGCCAATCCCGGAGTCTTCACTGATAAGTTTATGGGACTGGGAAATGGTCACAAAGCCAAGAAATGATGGAAAATGTGAGGTACCAAGGCCAAGGCTTGTTGGGAGGTTAGCAAAGCAGTCTGCTAAGCTTCATCCTTCTCTGCCGTCTGGTGGCGGTCTTTTAAAAACTGCTCCAATCTGTGAAGTGCATCTTGACCTGGTACGAGTCACAACAGGACAAGTTTATAAATTGAGGACTCCCAGTAAACAATATTTGGCCTCCATATCAACTTATGATTCTTCGAACCCAACCAAGTATTGGGGCTTCCCAGAATTAGCAGACAACAGAGAAGTCCTTCCGCACCCTAAATCCAGCGTAAGAGGTGATTCCAAAACTGCAGATGTAATGGCATTCAGCAGGGGTTCATCGTCGTTGCCAGACACAGCACATGAAAAGCTTGAAAGCTATCAATATAGGGATAGAGCTGCTGATAGAAGAGCCTTGCATGGTGGTTTTGGTGTGGGTCCAGGACAGAAGAATTCAGTAGATGGTGATAGTGATCGGCCAACACCTTCCACAGAGGAGGCTGCAGCAGAGGCCGTGAATATGTCATTTGGAGCTGGAAGTTACGCCCGGAAAGTTTTAGAAAGCATGGGCTGGAAGGAGGGGGAGATGCTTGGCAAGACTACAAAGGGATTAGTTGAACCTATTCAAGTACAAGGCAACATTGGTAGTGCTGGATTAGGGTGGCCTCGGGGAAGATTAAACCATCTTTGA

Protein Analysis

446

Amino Acids

48.45

Weight (kDa)

4.96

Isoelectric Point (pI)

39.78

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
G-patch PF01585 398 - 437 2.2e-09 G-patch domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 810
Acc65I GGTACC 2 cut(s) 114, 664
AccB1I GGYRCC 3 cut(s) 114, 218, 664
AccB7I CCANNNNNTGG 1 cut(s) 882
AccII CGCG 1 cut(s) 56
AciI CCGC 2 cut(s) 738, 923
AcoI YGGCCR 2 cut(s) 208, 1127
AcsI RAATTY 2 cut(s) 155, 1102
AfaI GTAC 8 cut(s) 9, 43, 116, 404, 420, 666, 786, 1281
AfiI CCNNNNNNNGG 4 cut(s) 34, 318, 734, 882
AgsI TTSAA 7 cut(s) 154, 239, 341, 572, 1025, 1268, 1277
AjnI CCWGG 3 cut(s) 110, 780, 1090
AloI GAACNNNNNNTCC 2 cut(s) 77, 109
AluBI AGCT 8 cut(s) 257, 448, 551, 712, 1021, 1029, 1049, 1184
AluI AGCT 8 cut(s) 257, 448, 551, 712, 1021, 1029, 1049, 1184
Alw21I GWGCWC 2 cut(s) 450, 553
Alw26I GTCTC 2 cut(s) 146, 514
Ama87I CYCGRG 1 cut(s) 1317
AoxI GGCC 7 cut(s) 60, 208, 671, 840, 1127, 1161, 1313
ApeKI GCWGC 4 cut(s) 398, 1049, 1151, 1154
ApoI RAATTY 2 cut(s) 155, 1102
Asp700I GAANNNNTTC 2 cut(s) 918, 1272
Asp718I GGTACC 2 cut(s) 114, 664
AspS9I GGNCC 1 cut(s) 1088
AsuC2I CCSGG 2 cut(s) 593, 1198
AsuHPI GGTGA 3 cut(s) 100, 959, 1127
AsuII TTCGAA 2 cut(s) 77, 866
AvaI CYCGRG 1 cut(s) 1317
AvaII GGWCC 1 cut(s) 1088
BaeI ACNNNNGTAYC 2 cut(s) 402, 435
BalI TGGCCA 1 cut(s) 210
BanI GGYRCC 3 cut(s) 114, 218, 664
BanII GRGCYC 2 cut(s) 450, 553
BarI GAAGNNNNNNTAC 2 cut(s) 872, 904
BauI CACGAG 1 cut(s) 443
BbsI GAAGAC 2 cut(s) 480, 591
Bbv12I GWGCWC 2 cut(s) 450, 553
BbvI GCAGC 4 cut(s) 410, 1036, 1138, 1166
BccI CCATC 5 cut(s) 76, 419, 431, 644, 1106
BceAI ACGGC 4 cut(s) 75, 411, 712, 1148
BciT130I CCWGG 3 cut(s) 112, 782, 1092
BciVI GTATCC 1 cut(s) 322
BcnI CCSGG 2 cut(s) 593, 1198
BcoDI GTCTC 2 cut(s) 146, 514
BfaI CTAG 1 cut(s) 323
BfmI CTRYAG 4 cut(s) 45, 258, 960, 1152
BfuI GTATCC 1 cut(s) 322
BisI GCNGC 4 cut(s) 399, 1050, 1152, 1155
BlpI GCTNAGC 1 cut(s) 708
BlsI GCNGC 4 cut(s) 400, 1051, 1153, 1156
Bme1390I CCNGG 5 cut(s) 112, 593, 782, 1092, 1198
Bme18I GGWCC 1 cut(s) 1088
BmeT110I CYCGRG 1 cut(s) 1317
BmgT120I GGNCC 1 cut(s) 1088
BmiI GGNNCC 4 cut(s) 116, 220, 666, 1089
BmrFI CCNGG 5 cut(s) 112, 593, 782, 1092, 1198
BmrI ACTGGG 2 cut(s) 631, 819
BmsI GCATC 4 cut(s) 277, 565, 781, 1227
BmuI ACTGGG 2 cut(s) 631, 819
BpiI GAAGAC 2 cut(s) 480, 591
Bpu1102I GCTNAGC 1 cut(s) 708
Bpu14I TTCGAA 2 cut(s) 77, 866
BpuMI CCSGG 2 cut(s) 593, 1198
BsaBI GATNNNNATC 1 cut(s) 1122
BsaJI CCNNGG 4 cut(s) 312, 668, 674, 1316
Bsc4I CCNNNNNNNGG 4 cut(s) 34, 318, 734, 882
Bse1I ACTGG 5 cut(s) 5, 201, 548, 626, 825
Bse8I GATNNNNATC 1 cut(s) 1122
BseBI CCWGG 3 cut(s) 112, 782, 1092
BseDI CCNNGG 4 cut(s) 312, 668, 674, 1316
BseGI GGATG 2 cut(s) 538, 715
BseJI GATNNNNATC 1 cut(s) 1122
BseLI CCNNNNNNNGG 4 cut(s) 34, 318, 734, 882
BseMII CTCAG 3 cut(s) 216, 267, 566
BseNI ACTGG 5 cut(s) 5, 201, 548, 626, 825
BseRI GAGGAG 3 cut(s) 118, 297, 1160
BseXI GCAGC 4 cut(s) 410, 1036, 1138, 1166
BsgI GTGCAG 1 cut(s) 295
Bsh1236I CGCG 1 cut(s) 56
BshFI GGCC 7 cut(s) 62, 210, 673, 842, 1129, 1163, 1315
BshNI GGYRCC 3 cut(s) 114, 218, 664
BsiHKAI GWGCWC 2 cut(s) 450, 553
BsiHKCI CYCGRG 1 cut(s) 1317
BsiSI CCGG 2 cut(s) 593, 1198
BslFI GGGAC 1 cut(s) 632
BslI CCNNNNNNNGG 4 cut(s) 34, 318, 734, 882
BsmAI GTCTC 2 cut(s) 146, 514
BsmFI GGGAC 1 cut(s) 632
BsmI GAATGC 1 cut(s) 974
BsnI GGCC 7 cut(s) 62, 210, 673, 842, 1129, 1163, 1315
BsoBI CYCGRG 1 cut(s) 1317
Bsp119I TTCGAA 2 cut(s) 77, 866
Bsp1286I GDGCHC 2 cut(s) 450, 553
Bsp143I GATC 2 cut(s) 385, 1123
Bsp1720I GCTNAGC 1 cut(s) 708
Bsp68I TCGCGA 1 cut(s) 56
BspACI CCGC 2 cut(s) 738, 923
BspANI GGCC 7 cut(s) 62, 210, 673, 842, 1129, 1163, 1315
BspCNI CTCAG 3 cut(s) 217, 266, 565
BspFNI CGCG 1 cut(s) 56
BspHI TCATGA 1 cut(s) 388
BspLI GGNNCC 4 cut(s) 116, 220, 666, 1089
BspMAI CTGCAG 2 cut(s) 964, 1156
BspQI GCTCTTC 1 cut(s) 1054
BspT104I TTCGAA 2 cut(s) 77, 866
BspT107I GGYRCC 3 cut(s) 114, 218, 664
BsrI ACTGG 5 cut(s) 5, 201, 548, 626, 825
BssECI CCNNGG 4 cut(s) 312, 668, 674, 1316
BssMI GATC 2 cut(s) 385, 1123
BssSI CACGAG 1 cut(s) 443
BssT1I CCWWGG 2 cut(s) 668, 674
Bst2BI CACGAG 1 cut(s) 443
Bst2UI CCWGG 3 cut(s) 112, 782, 1092
Bst6I CTCTTC 2 cut(s) 531, 1054
BstBI TTCGAA 2 cut(s) 77, 866
BstC8I GCNNGC 3 cut(s) 36, 382, 549
BstDEI CTNAG 5 cut(s) 225, 253, 367, 552, 708
BstF5I GGATG 2 cut(s) 538, 715
BstFNI CGCG 1 cut(s) 56
BstKTI GATC 2 cut(s) 388, 1126
BstMAI GTCTC 2 cut(s) 146, 514
BstMBI GATC 2 cut(s) 385, 1123
BstMWI GCNNNNNNNGC 1 cut(s) 1160
BstNI CCWGG 3 cut(s) 112, 782, 1092
BstSCI CCNGG 5 cut(s) 110, 591, 780, 1090, 1196
BstSFI CTRYAG 4 cut(s) 45, 258, 960, 1152
BstUI CGCG 1 cut(s) 56
BstV1I GCAGC 4 cut(s) 410, 1036, 1138, 1166
BstV2I GAAGAC 2 cut(s) 480, 591
BsuI GTATCC 1 cut(s) 322
BsuRI GGCC 7 cut(s) 62, 210, 673, 842, 1129, 1163, 1315
BtsCI GGATG 2 cut(s) 538, 715
BtsI GCAGTG 1 cut(s) 289
BtsIMutI CAGTG 3 cut(s) 222, 289, 602
BtuMI TCGCGA 1 cut(s) 56
Cac8I GCNNGC 3 cut(s) 36, 382, 549
CciI TCATGA 1 cut(s) 388
Cfr13I GGNCC 1 cut(s) 1088
CsiI ACCWGGT 2 cut(s) 110, 780
Csp6I GTAC 8 cut(s) 8, 42, 115, 403, 419, 665, 785, 1280
CviAII CATG 7 cut(s) 22, 206, 389, 528, 1013, 1070, 1216
CviQI GTAC 8 cut(s) 8, 42, 115, 403, 419, 665, 785, 1280
DdeI CTNAG 5 cut(s) 225, 253, 367, 552, 708
DpnI GATC 2 cut(s) 387, 1125
DpnII GATC 2 cut(s) 385, 1123
DraI TTTAAA 1 cut(s) 747
EaeI YGGCCR 2 cut(s) 208, 1127
Eam1104I CTCTTC 2 cut(s) 531, 1054
EarI CTCTTC 2 cut(s) 531, 1054
Ecl136II GAGCTC 2 cut(s) 448, 551
Eco130I CCWWGG 2 cut(s) 668, 674
Eco24I GRGCYC 2 cut(s) 450, 553
Eco47I GGWCC 1 cut(s) 1088
Eco53kI GAGCTC 2 cut(s) 448, 551
Eco88I CYCGRG 1 cut(s) 1317
EcoICRI GAGCTC 2 cut(s) 448, 551
EcoRI GAATTC 1 cut(s) 1102
EcoRII CCWGG 3 cut(s) 110, 780, 1090
EcoT14I CCWWGG 2 cut(s) 668, 674
EcoT38I GRGCYC 2 cut(s) 450, 553
ErhI CCWWGG 2 cut(s) 668, 674
FaeI CATG 7 cut(s) 25, 209, 392, 531, 1016, 1073, 1219
FalI AAGNNNNNCTT 2 cut(s) 759, 791
FaqI GGGAC 1 cut(s) 632
FatI CATG 7 cut(s) 21, 205, 388, 527, 1012, 1069, 1215
Fnu4HI GCNGC 4 cut(s) 399, 1050, 1152, 1155
FokI GGATG 2 cut(s) 545, 702
FriOI GRGCYC 2 cut(s) 450, 553
Fsp4HI GCNGC 4 cut(s) 399, 1050, 1152, 1155
FspBI CTAG 1 cut(s) 323
GluI GCNGC 4 cut(s) 399, 1050, 1152, 1155
HaeIII GGCC 7 cut(s) 62, 210, 673, 842, 1129, 1163, 1315
HapII CCGG 2 cut(s) 593, 1198
Hin1II CATG 7 cut(s) 25, 209, 392, 531, 1016, 1073, 1219
HindIII AAGCTT 2 cut(s) 710, 1019
HinfI GANTC 9 cut(s) 14, 229, 455, 466, 596, 789, 820, 860, 950
HpaII CCGG 2 cut(s) 593, 1198
HphI GGTGA 3 cut(s) 100, 959, 1127
Hpy166II GTNNAC 1 cut(s) 830
Hpy188I TCNGA 2 cut(s) 316, 514
Hpy188III TCNNGA 8 cut(s) 55, 166, 239, 389, 443, 470, 572, 776
Hpy8I GTNNAC 1 cut(s) 830
Hpy99I CGWCG 2 cut(s) 61, 997
HpyAV CCTTC 6 cut(s) 259, 512, 729, 929, 1146, 1219
HpyCH4IV ACGT 1 cut(s) 92
HpyCH4V TGCA 7 cut(s) 276, 290, 578, 772, 962, 1069, 1154
HpyF10VI GCNNNNNNNGC 1 cut(s) 1160
HpyF3I CTNAG 5 cut(s) 225, 253, 367, 552, 708
HpySE526I ACGT 1 cut(s) 92
Hsp92II CATG 7 cut(s) 25, 209, 392, 531, 1016, 1073, 1219
KpnI GGTACC 2 cut(s) 118, 668
Kzo9I GATC 2 cut(s) 385, 1123
LguI GCTCTTC 1 cut(s) 1054
LmnI GCTCC 2 cut(s) 760, 1181
Lsp1109I GCAGC 4 cut(s) 410, 1036, 1138, 1166
LweI GCATC 4 cut(s) 277, 565, 781, 1227
MabI ACCWGGT 2 cut(s) 110, 780
MaeI CTAG 1 cut(s) 323
MaeII ACGT 1 cut(s) 92
MaeIII GTNAC 4 cut(s) 440, 631, 790, 1190
MalI GATC 2 cut(s) 387, 1125
MboI GATC 2 cut(s) 385, 1123
MhlI GDGCHC 2 cut(s) 450, 553
MlsI TGGCCA 1 cut(s) 210
MluCI AATT 5 cut(s) 155, 489, 812, 896, 1102
MluNI TGGCCA 1 cut(s) 210
MlyI GAGTC 3 cut(s) 605, 798, 814
MmeI TCCRAC 1 cut(s) 387
Mox20I TGGCCA 1 cut(s) 210
MroXI GAANNNNTTC 2 cut(s) 918, 1272
MscI TGGCCA 1 cut(s) 210
MseI TTAA 2 cut(s) 746, 1328
Msp20I TGGCCA 1 cut(s) 210
MspA1I CMGCKG 1 cut(s) 257
MspI CCGG 2 cut(s) 593, 1198
MspR9I CCNGG 5 cut(s) 112, 593, 782, 1092, 1198
Mva1269I GAATGC 1 cut(s) 974
MvaI CCWGG 3 cut(s) 112, 782, 1092
MvnI CGCG 1 cut(s) 56
MwoI GCNNNNNNNGC 1 cut(s) 1160
NciI CCSGG 2 cut(s) 593, 1198
NdeII GATC 2 cut(s) 385, 1123
NlaIII CATG 7 cut(s) 25, 209, 392, 531, 1016, 1073, 1219
NlaIV GGNNCC 4 cut(s) 116, 220, 666, 1089
NmuCI GTSAC 3 cut(s) 440, 631, 790
NruI TCGCGA 1 cut(s) 56
NspV TTCGAA 2 cut(s) 77, 866
PagI TCATGA 1 cut(s) 388
PciSI GCTCTTC 1 cut(s) 1054
PctI GAATGC 1 cut(s) 974
PdmI GAANNNNTTC 2 cut(s) 918, 1272
PfeI GAWTC 6 cut(s) 14, 229, 455, 466, 860, 950
PflMI CCANNNNNTGG 1 cut(s) 882
PfoI TCCNGGA 2 cut(s) 591, 1090
PkrI GCNGC 4 cut(s) 400, 1051, 1153, 1156
PleI GAGTC 3 cut(s) 604, 797, 814
PpsI GAGTC 3 cut(s) 604, 797, 814
PsiI TTATAA 1 cut(s) 810
Psp124BI GAGCTC 2 cut(s) 450, 553
Psp6I CCWGG 3 cut(s) 110, 780, 1090
PspGI CCWGG 3 cut(s) 110, 780, 1090
PspN4I GGNNCC 4 cut(s) 116, 220, 666, 1089
PspPI GGNCC 1 cut(s) 1088
PstI CTGCAG 2 cut(s) 964, 1156
PvuII CAGCTG 1 cut(s) 257
RruI TCGCGA 1 cut(s) 56
RsaI GTAC 8 cut(s) 9, 43, 116, 404, 420, 666, 786, 1281
RsaNI GTAC 8 cut(s) 8, 42, 115, 403, 419, 665, 785, 1280
SacI GAGCTC 2 cut(s) 450, 553
SapI GCTCTTC 1 cut(s) 1054
SaqAI TTAA 2 cut(s) 746, 1328
SatI GCNGC 4 cut(s) 399, 1050, 1152, 1155
Sau3AI GATC 2 cut(s) 385, 1123
Sau96I GGNCC 1 cut(s) 1088
SchI GAGTC 3 cut(s) 605, 798, 814
ScrFI CCNGG 5 cut(s) 112, 593, 782, 1092, 1198
SduI GDGCHC 2 cut(s) 450, 553
SexAI ACCWGGT 2 cut(s) 110, 780
SfaNI GCATC 4 cut(s) 277, 565, 781, 1227
SfcI CTRYAG 4 cut(s) 45, 258, 960, 1152
SfuI TTCGAA 2 cut(s) 77, 866
SinI GGWCC 1 cut(s) 1088
Sse9I AATT 5 cut(s) 155, 489, 812, 896, 1102
SsiI CCGC 2 cut(s) 738, 923
SspI AATATT 1 cut(s) 836
SspMI CTAG 1 cut(s) 323
SstI GAGCTC 2 cut(s) 450, 553
StyD4I CCNGG 5 cut(s) 110, 591, 780, 1090, 1196
StyI CCWWGG 2 cut(s) 668, 674
TaiI ACGT 1 cut(s) 95
TaqI TCGA 3 cut(s) 77, 497, 866
TasI AATT 5 cut(s) 155, 489, 812, 896, 1102
TatI WGTACW 1 cut(s) 1279
TfiI GAWTC 6 cut(s) 14, 229, 455, 466, 860, 950
Tru1I TTAA 2 cut(s) 746, 1328
Tru9I TTAA 2 cut(s) 746, 1328
TscAI CASTG 3 cut(s) 229, 289, 609
TseFI GTSAC 3 cut(s) 440, 631, 790
TseI GCWGC 4 cut(s) 398, 1049, 1151, 1154
Tsp45I GTSAC 3 cut(s) 440, 631, 790
TspDTI ATGAA 7 cut(s) 468, 516, 531, 549, 704, 978, 1029
TspRI CASTG 3 cut(s) 229, 289, 609
Van91I CCANNNNNTGG 1 cut(s) 882
VpaK11BI GGWCC 1 cut(s) 1088
XapI RAATTY 2 cut(s) 155, 1102
XcmI CCANNNNNNNNNTGG 1 cut(s) 879
XmnI GAANNNNTTC 2 cut(s) 918, 1272
XspI CTAG 1 cut(s) 323
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.