FvH4_5g05850

G-patch domain

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb5
Physical Location & Seq
Reverse (-)
3449416 .. 3452343
2928 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_5g05850.t7

Sequence Viewer

Length: 1371 bp
ATGAGGCAGATGAAAATGGAGAGTCCGGCTGCCACCGAATCACCCGACTCCCAAAACCCGGAAAATTCCTTCGTCTGGGATGAACAGTCTCAGCTCTACTTTCACGCCAGTAGCGGATTCTACCACGACCCGAATGCTGGTTGGTACTATAGCACCCGCGACGGCCTCTATTACAAATTCGAACATGGAAATTACGTTCTTCTTCCCTCTCACCAGGGTGATAATTTGGAGACCAATAATAGTAGTGAGAATCCCATTCAAGAAGACCCGTTTTCAGCTATAGGGAATACGGATTGCAGCAGCAGTGATGCACTTGAAAATCACCCTCCACCCTCGGAATGGCTAGAGGATACGCTTATAGAACTATATTTGTCTGGTTATCCCAACTCAGATGCGAATGCTGGTGATCATGATATGACAGTGTACCCCGAAACATATGTTCATGATGGGAATAATGATAGTCATGATCTCAATGAATGCACATCGATTCCAGAAGACTATGGTGCTGTAATCGAATCAAGTCAAAATGTCTCTGATACAAGTTTGGTGCTTCTATGTGGTTCATGGGAAGAAGAGAACTGGCGAGCTCAGTATGGACAGGTTGTTCAAGATGCAGAACTACCAATTCCGGAGTCCTCACTGATAAGTTTATGGGAGTGGGAAATGGTCACAAAGCCAAGAAATGATGGAAAAGGTGAGGTGCCAAGACTTGTTGGGAGGTTAGCTAAACAGTCTGCTAAGCTTCATCCTTCTCTGCCGTCTGGTGGTGGTCTTTTAAAAACTGCTCCAATTTGTGAAGTGCACCTTGACCTAGTACGCGTCACAACAGGACAAGTCTATAAATTGAGGACCCCCAGTAAACGATATTTGGCGTCTTTATCAATTTATGATTCTTCGAACCCAACCAAGGACTGGGGATTCCCAGAATTATCAAACAACAGAGAATCCCTTCCCCTCCCTAAATCCAGTGTAAGAAGTGGTTCCAAAACTGCAGATGGAATGACATTCAGCAGGGGTTCATCGTTGTTGCCAGACACAGCACATGATAAGCTTGAAAGCTATCAATATAGGGATAGAGCTGCTGATAGAAGAGCCTTGCATGGTGGTTATGGTGTGGGTCCAGGACAGAAGAATTCAGTAGATGGCGATAGTGATCGACCAACGCCTTCTACAGAGGAAGCTGCAGCAGAGGCCTTGAATATGTCATTTGGAGTGGGAAGTTATGCCCGGAAAGTTTTAGAAAGCATGGGATGGAAGGAGGGGGAGACACTTGGCAAGACTACAAAGGGATTGGTTGAACCAATTCAAGCACAAGGCAACATTGGGAGTGCAGGATTAGGGTGGCCTCAGGGAAGATTAAAGCATCGTTGA

Protein Analysis

457

Amino Acids

50.23

Weight (kDa)

4.86

Isoelectric Point (pI)

44.89

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
OCRE PF17780 21 - 61 2.7e-08 OCRE domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 700
AccB7I CCANNNNNTGG 1 cut(s) 912
AccII CGCG 2 cut(s) 159, 819
AccIII TCCGGA 1 cut(s) 628
AciI CCGC 2 cut(s) 114, 157
AcsI RAATTY 3 cut(s) 64, 176, 1132
AcyI GRCGYC 1 cut(s) 872
AfaI GTAC 3 cut(s) 146, 425, 816
AfiI CCNNNNNNNGG 7 cut(s) 58, 75, 137, 339, 764, 907, 912
AflIII ACRYGT 1 cut(s) 817
AgsI TTSAA 7 cut(s) 260, 317, 608, 1055, 1198, 1298, 1307
AjnI CCWGG 2 cut(s) 213, 1120
AleI CACNNNNGTG 1 cut(s) 216
AloI GAACNNNNNNTCC 4 cut(s) 180, 212, 588, 620
AluBI AGCT 9 cut(s) 94, 278, 587, 725, 742, 1051, 1059, 1079, 1181
AluI AGCT 9 cut(s) 94, 278, 587, 725, 742, 1051, 1059, 1079, 1181
Alw21I GWGCWC 2 cut(s) 589, 804
Alw26I GTCTC 4 cut(s) 93, 224, 535, 1259
Alw44I GTGCAC 1 cut(s) 800
Aor13HI TCCGGA 1 cut(s) 628
AoxI GGCC 3 cut(s) 163, 1191, 1343
ApaLI GTGCAC 1 cut(s) 800
ApeKI GCWGC 6 cut(s) 29, 297, 300, 1079, 1181, 1184
ApoI RAATTY 3 cut(s) 64, 176, 1132
Asp700I GAANNNNTTC 3 cut(s) 948, 979, 1302
AspS9I GGNCC 2 cut(s) 849, 1118
AsuC2I CCSGG 2 cut(s) 59, 1228
AsuHPI GGTGA 6 cut(s) 33, 203, 230, 314, 416, 707
AsuII TTCGAA 2 cut(s) 180, 896
AvaII GGWCC 2 cut(s) 849, 1118
AxyI CCTNAGG 1 cut(s) 1347
BaeGI GKGCMC 1 cut(s) 804
BanI GGYRCC 1 cut(s) 700
BanII GRGCYC 1 cut(s) 589
BbsI GAAGAC 2 cut(s) 270, 501
Bbv12I GWGCWC 2 cut(s) 589, 804
BbvI GCAGC 6 cut(s) 16, 309, 312, 1066, 1168, 1196
BccI CCATC 5 cut(s) 440, 680, 989, 1136, 1245
BceAI ACGGC 2 cut(s) 178, 742
BcgI CGANNNNNNTGC 2 cut(s) 116, 150
BciT130I CCWGG 2 cut(s) 215, 1122
BciVI GTATCC 1 cut(s) 343
BclI TGATCA 1 cut(s) 406
BcnI CCSGG 2 cut(s) 59, 1228
BcoDI GTCTC 4 cut(s) 93, 224, 535, 1259
BfaI CTAG 2 cut(s) 344, 812
BfmI CTRYAG 5 cut(s) 148, 279, 990, 1170, 1182
BfuI GTATCC 1 cut(s) 343
BisI GCNGC 6 cut(s) 30, 298, 301, 1080, 1182, 1185
BlpI GCTNAGC 1 cut(s) 738
BlsI GCNGC 6 cut(s) 31, 299, 302, 1081, 1183, 1186
Bme1390I CCNGG 4 cut(s) 59, 215, 1122, 1228
Bme18I GGWCC 2 cut(s) 849, 1118
BmgT120I GGNCC 2 cut(s) 849, 1118
BmiI GGNNCC 4 cut(s) 702, 851, 982, 1119
BmrFI CCNGG 4 cut(s) 59, 215, 1122, 1228
BmrI ACTGGG 2 cut(s) 849, 922
BmsI GCATC 3 cut(s) 298, 382, 601
BmuI ACTGGG 2 cut(s) 849, 922
BpiI GAAGAC 2 cut(s) 270, 501
Bpu1102I GCTNAGC 1 cut(s) 738
Bpu14I TTCGAA 2 cut(s) 180, 896
BpuMI CCSGG 2 cut(s) 59, 1228
Bsa29I ATCGAT 1 cut(s) 485
BsaBI GATNNNNATC 1 cut(s) 1152
BsaHI GRCGYC 1 cut(s) 872
BsaI GGTCTC 1 cut(s) 224
BsaJI CCNNGG 3 cut(s) 214, 333, 906
BsaWI WCCGGW 1 cut(s) 628
Bsc4I CCNNNNNNNGG 7 cut(s) 58, 75, 137, 339, 764, 907, 912
Bse1I ACTGG 5 cut(s) 108, 584, 855, 917, 966
Bse21I CCTNAGG 1 cut(s) 1347
Bse8I GATNNNNATC 1 cut(s) 1152
BseAI TCCGGA 1 cut(s) 628
BseBI CCWGG 2 cut(s) 215, 1122
BseCI ATCGAT 1 cut(s) 485
BseDI CCNNGG 3 cut(s) 214, 333, 906
BseGI GGATG 3 cut(s) 85, 745, 1256
BseJI GATNNNNATC 1 cut(s) 1152
BseLI CCNNNNNNNGG 7 cut(s) 58, 75, 137, 339, 764, 907, 912
BseMII CTCAG 4 cut(s) 104, 402, 602, 1361
BseNI ACTGG 5 cut(s) 108, 584, 855, 917, 966
BseSI GKGCMC 1 cut(s) 804
BseXI GCAGC 6 cut(s) 16, 309, 312, 1066, 1168, 1196
BsgI GTGCAG 1 cut(s) 1350
Bsh1236I CGCG 2 cut(s) 159, 819
BshFI GGCC 3 cut(s) 165, 1193, 1345
BshNI GGYRCC 1 cut(s) 700
BshVI ATCGAT 1 cut(s) 485
BsiHKAI GWGCWC 2 cut(s) 589, 804
BsiSI CCGG 4 cut(s) 26, 59, 629, 1228
BslI CCNNNNNNNGG 7 cut(s) 58, 75, 137, 339, 764, 907, 912
BsmAI GTCTC 4 cut(s) 93, 224, 535, 1259
BsmI GAATGC 3 cut(s) 139, 403, 482
BsnI GGCC 3 cut(s) 165, 1193, 1345
Bso31I GGTCTC 1 cut(s) 224
Bsp119I TTCGAA 2 cut(s) 180, 896
Bsp1286I GDGCHC 2 cut(s) 589, 804
Bsp13I TCCGGA 1 cut(s) 628
Bsp143I GATC 3 cut(s) 406, 466, 1153
Bsp1720I GCTNAGC 1 cut(s) 738
BspACI CCGC 2 cut(s) 114, 157
BspANI GGCC 3 cut(s) 165, 1193, 1345
BspCNI CTCAG 4 cut(s) 103, 401, 601, 1360
BspDI ATCGAT 1 cut(s) 485
BspEI TCCGGA 1 cut(s) 628
BspFNI CGCG 2 cut(s) 159, 819
BspHI TCATGA 3 cut(s) 409, 442, 463
BspLI GGNNCC 4 cut(s) 702, 851, 982, 1119
BspMAI CTGCAG 2 cut(s) 994, 1186
BspQI GCTCTTC 1 cut(s) 1084
BspT104I TTCGAA 2 cut(s) 180, 896
BspT107I GGYRCC 1 cut(s) 700
BspTNI GGTCTC 1 cut(s) 224
BsrI ACTGG 5 cut(s) 108, 584, 855, 917, 966
BssECI CCNNGG 3 cut(s) 214, 333, 906
BssMI GATC 3 cut(s) 406, 466, 1153
BssNI GRCGYC 1 cut(s) 872
BssT1I CCWWGG 1 cut(s) 906
Bst2UI CCWGG 2 cut(s) 215, 1122
Bst4CI ACNGT 3 cut(s) 87, 421, 732
Bst6I CTCTTC 2 cut(s) 567, 1084
BstACI GRCGYC 1 cut(s) 872
BstBI TTCGAA 2 cut(s) 180, 896
BstC8I GCNNGC 1 cut(s) 585
BstDEI CTNAG 5 cut(s) 90, 388, 588, 738, 1347
BstF5I GGATG 3 cut(s) 85, 745, 1256
BstFNI CGCG 2 cut(s) 159, 819
BstKTI GATC 3 cut(s) 409, 469, 1156
BstMAI GTCTC 4 cut(s) 93, 224, 535, 1259
BstMBI GATC 3 cut(s) 406, 466, 1153
BstMWI GCNNNNNNNGC 1 cut(s) 1190
BstNI CCWGG 2 cut(s) 215, 1122
BstSCI CCNGG 4 cut(s) 57, 213, 1120, 1226
BstSFI CTRYAG 5 cut(s) 148, 279, 990, 1170, 1182
BstSLI GKGCMC 1 cut(s) 804
BstUI CGCG 2 cut(s) 159, 819
BstV1I GCAGC 6 cut(s) 16, 309, 312, 1066, 1168, 1196
BstV2I GAAGAC 2 cut(s) 270, 501
Bsu15I ATCGAT 1 cut(s) 485
Bsu36I CCTNAGG 1 cut(s) 1347
BsuI GTATCC 1 cut(s) 343
BsuRI GGCC 3 cut(s) 165, 1193, 1345
BsuTUI ATCGAT 1 cut(s) 485
BtsCI GGATG 3 cut(s) 85, 745, 1256
BtsI GCAGTG 1 cut(s) 310
BtsIMutI CAGTG 4 cut(s) 310, 426, 638, 973
Cac8I GCNNGC 1 cut(s) 585
CciI TCATGA 3 cut(s) 409, 442, 463
Cfr13I GGNCC 2 cut(s) 849, 1118
ClaI ATCGAT 1 cut(s) 485
CseI GACGC 2 cut(s) 808, 861
Csp6I GTAC 3 cut(s) 145, 424, 815
CviAII CATG 8 cut(s) 185, 410, 443, 464, 564, 1043, 1100, 1246
CviQI GTAC 3 cut(s) 145, 424, 815
DdeI CTNAG 5 cut(s) 90, 388, 588, 738, 1347
DpnI GATC 3 cut(s) 408, 468, 1155
DpnII GATC 3 cut(s) 406, 466, 1153
DraI TTTAAA 1 cut(s) 777
Eam1104I CTCTTC 2 cut(s) 567, 1084
EarI CTCTTC 2 cut(s) 567, 1084
Ecl136II GAGCTC 1 cut(s) 587
Eco130I CCWWGG 1 cut(s) 906
Eco147I AGGCCT 1 cut(s) 1193
Eco24I GRGCYC 1 cut(s) 589
Eco31I GGTCTC 1 cut(s) 224
Eco47I GGWCC 2 cut(s) 849, 1118
Eco53kI GAGCTC 1 cut(s) 587
Eco81I CCTNAGG 1 cut(s) 1347
EcoICRI GAGCTC 1 cut(s) 587
EcoO109I RGGNCCY 1 cut(s) 849
EcoRI GAATTC 1 cut(s) 1132
EcoRII CCWGG 2 cut(s) 213, 1120
EcoT14I CCWWGG 1 cut(s) 906
EcoT38I GRGCYC 1 cut(s) 589
ErhI CCWWGG 1 cut(s) 906
FaeI CATG 8 cut(s) 188, 413, 446, 467, 567, 1046, 1103, 1249
FalI AAGNNNNNCTT 2 cut(s) 789, 821
FatI CATG 8 cut(s) 184, 409, 442, 463, 563, 1042, 1099, 1245
FauI CCCGC 1 cut(s) 164
FauNDI CATATG 1 cut(s) 436
FbaI TGATCA 1 cut(s) 406
Fnu4HI GCNGC 6 cut(s) 30, 298, 301, 1080, 1182, 1185
FokI GGATG 3 cut(s) 92, 732, 1263
FriOI GRGCYC 1 cut(s) 589
Fsp4HI GCNGC 6 cut(s) 30, 298, 301, 1080, 1182, 1185
FspBI CTAG 2 cut(s) 344, 812
GluI GCNGC 6 cut(s) 30, 298, 301, 1080, 1182, 1185
HaeIII GGCC 3 cut(s) 165, 1193, 1345
HapII CCGG 4 cut(s) 26, 59, 629, 1228
HgaI GACGC 2 cut(s) 808, 861
Hin1I GRCGYC 1 cut(s) 872
Hin1II CATG 8 cut(s) 188, 413, 446, 467, 567, 1046, 1103, 1249
HindIII AAGCTT 2 cut(s) 740, 1049
HpaII CCGG 4 cut(s) 26, 59, 629, 1228
HphI GGTGA 6 cut(s) 33, 203, 230, 314, 416, 707
Hpy166II GTNNAC 3 cut(s) 424, 802, 860
Hpy188I TCNGA 3 cut(s) 337, 391, 535
Hpy188III TCNNGA 7 cut(s) 260, 410, 443, 464, 491, 608, 629
Hpy8I GTNNAC 3 cut(s) 424, 802, 860
Hpy99I CGWCG 1 cut(s) 164
HpyAV CCTTC 5 cut(s) 79, 759, 959, 1176, 1249
HpyCH4III ACNGT 3 cut(s) 87, 421, 732
HpyCH4IV ACGT 1 cut(s) 195
HpyCH4V TGCA 9 cut(s) 297, 311, 480, 614, 802, 992, 1099, 1184, 1331
HpyF10VI GCNNNNNNNGC 1 cut(s) 1190
HpyF3I CTNAG 5 cut(s) 90, 388, 588, 738, 1347
HpySE526I ACGT 1 cut(s) 195
Hsp92I GRCGYC 1 cut(s) 872
Hsp92II CATG 8 cut(s) 188, 413, 446, 467, 567, 1046, 1103, 1249
Kpn2I TCCGGA 1 cut(s) 628
Ksp22I TGATCA 1 cut(s) 406
Kzo9I GATC 3 cut(s) 406, 466, 1153
LguI GCTCTTC 1 cut(s) 1084
LmnI GCTCC 1 cut(s) 790
Lsp1109I GCAGC 6 cut(s) 16, 309, 312, 1066, 1168, 1196
LweI GCATC 3 cut(s) 298, 382, 601
MaeI CTAG 2 cut(s) 344, 812
MaeII ACGT 1 cut(s) 195
MaeIII GTNAC 2 cut(s) 667, 820
MalI GATC 3 cut(s) 408, 468, 1155
MboI GATC 3 cut(s) 406, 466, 1153
MhlI GDGCHC 2 cut(s) 589, 804
MluI ACGCGT 1 cut(s) 817
MlyI GAGTC 3 cut(s) 31, 41, 641
MroI TCCGGA 1 cut(s) 628
MroXI GAANNNNTTC 3 cut(s) 948, 979, 1302
MseI TTAA 2 cut(s) 776, 1358
MslI CAYNNNNRTG 1 cut(s) 216
MspI CCGG 4 cut(s) 26, 59, 629, 1228
MspR9I CCNGG 4 cut(s) 59, 215, 1122, 1228
Mva1269I GAATGC 3 cut(s) 139, 403, 482
MvaI CCWGG 2 cut(s) 215, 1122
MvnI CGCG 2 cut(s) 159, 819
MwoI GCNNNNNNNGC 1 cut(s) 1190
NciI CCSGG 2 cut(s) 59, 1228
NdeI CATATG 1 cut(s) 436
NdeII GATC 3 cut(s) 406, 466, 1153
NlaIII CATG 8 cut(s) 188, 413, 446, 467, 567, 1046, 1103, 1249
NlaIV GGNNCC 4 cut(s) 702, 851, 982, 1119
NmuCI GTSAC 2 cut(s) 667, 820
NspV TTCGAA 2 cut(s) 180, 896
OliI CACNNNNGTG 1 cut(s) 216
PagI TCATGA 3 cut(s) 409, 442, 463
PceI AGGCCT 1 cut(s) 1193
PciSI GCTCTTC 1 cut(s) 1084
PctI GAATGC 3 cut(s) 139, 403, 482
PdmI GAANNNNTTC 3 cut(s) 948, 979, 1302
PfeI GAWTC 8 cut(s) 38, 117, 250, 487, 515, 890, 918, 944
PflMI CCANNNNNTGG 1 cut(s) 912
PfoI TCCNGGA 1 cut(s) 1120
PkrI GCNGC 6 cut(s) 31, 299, 302, 1081, 1183, 1186
PleI GAGTC 3 cut(s) 30, 41, 640
PpsI GAGTC 3 cut(s) 30, 41, 640
PpuMI RGGWCCY 1 cut(s) 849
Psp124BI GAGCTC 1 cut(s) 589
Psp5II RGGWCCY 1 cut(s) 849
Psp6I CCWGG 2 cut(s) 213, 1120
PspGI CCWGG 2 cut(s) 213, 1120
PspN4I GGNNCC 4 cut(s) 702, 851, 982, 1119
PspPI GGNCC 2 cut(s) 849, 1118
PspPPI RGGWCCY 1 cut(s) 849
PstI CTGCAG 2 cut(s) 994, 1186
RsaI GTAC 3 cut(s) 146, 425, 816
RsaNI GTAC 3 cut(s) 145, 424, 815
RseI CAYNNNNRTG 1 cut(s) 216
SacI GAGCTC 1 cut(s) 589
SapI GCTCTTC 1 cut(s) 1084
SaqAI TTAA 2 cut(s) 776, 1358
SatI GCNGC 6 cut(s) 30, 298, 301, 1080, 1182, 1185
Sau3AI GATC 3 cut(s) 406, 466, 1153
Sau96I GGNCC 2 cut(s) 849, 1118
SchI GAGTC 3 cut(s) 31, 41, 641
ScrFI CCNGG 4 cut(s) 59, 215, 1122, 1228
SduI GDGCHC 2 cut(s) 589, 804
SfaNI GCATC 3 cut(s) 298, 382, 601
SfcI CTRYAG 5 cut(s) 148, 279, 990, 1170, 1182
SfuI TTCGAA 2 cut(s) 180, 896
SinI GGWCC 2 cut(s) 849, 1118
SmiMI CAYNNNNRTG 1 cut(s) 216
SseBI AGGCCT 1 cut(s) 1193
SsiI CCGC 2 cut(s) 114, 157
SspMI CTAG 2 cut(s) 344, 812
SstI GAGCTC 1 cut(s) 589
StuI AGGCCT 1 cut(s) 1193
StyD4I CCNGG 4 cut(s) 57, 213, 1120, 1226
StyI CCWWGG 1 cut(s) 906
TaaI ACNGT 3 cut(s) 87, 421, 732
TaiI ACGT 1 cut(s) 198
TaqI TCGA 5 cut(s) 180, 485, 513, 896, 1156
TfiI GAWTC 8 cut(s) 38, 117, 250, 487, 515, 890, 918, 944
Tru1I TTAA 2 cut(s) 776, 1358
Tru9I TTAA 2 cut(s) 776, 1358
TscAI CASTG 4 cut(s) 310, 426, 645, 973
TseFI GTSAC 2 cut(s) 667, 820
TseI GCWGC 6 cut(s) 29, 297, 300, 1079, 1181, 1184
Tsp45I GTSAC 2 cut(s) 667, 820
TspDTI ATGAA 7 cut(s) 26, 96, 431, 489, 552, 734, 1008
TspGWI ACGGA 1 cut(s) 305
TspRI CASTG 4 cut(s) 310, 426, 645, 973
Van91I CCANNNNNTGG 1 cut(s) 912
VneI GTGCAC 1 cut(s) 800
VpaK11BI GGWCC 2 cut(s) 849, 1118
XapI RAATTY 3 cut(s) 64, 176, 1132
XcmI CCANNNNNNNNNTGG 2 cut(s) 336, 909
XmnI GAANNNNTTC 3 cut(s) 948, 979, 1302
XspI CTAG 2 cut(s) 344, 812
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.