Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000007

Orthogroup ID

OG0002849

Physical Location & Seq

Genomic Coordinates Forward (+)

536967 .. 540982

Gene Structure 4016 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug07G0006900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1056 bp

ATGTCCGCTGCCTCATCAGCTCTTACACTCCGCCTCCCCTTCGCTTCCTCAATCACCACCACCACTAAGCTCATTTATCCGATATGCAGCTCACGTCGGTCTATAAGCAGAACTTTGAGGCTTGTGGGTTGCGCTCGTGCTGCCATTTCAAGCCAAGCGCAAGGTACATTTGATCCTGAACTCCGTTTAGTACTTGAACTTGCCACTGATTCTGAGTTATATGAGATTGAAAGAATCCTTTTTGGCCCTAGCTACTTCAGCCCTTTGCTGAAATCCATAATGAGCAGAACCAACGTCGACTATGCAATGATTGAAGAGGATCTTGAGGAGCGAGATCAGTTTTTATCAGCATTAGAGTCGCGATTCTTATTCCTCGCAGCGGATGCTCGGTCCACAATAAGGGGTTGGAGGCCATCATATAGGAATGTCTTGCTTGCAGTTAGAAAAGAGTTGAACATTCCCTGCTCAAGCAAATTATCAACTGAAGACCTTGAAGCAGAGATTTTCCTTCATCTGTTGCGAGACTACTCAAGTGAAGAATCAGGAAGTTTCGAGGGCTTGCTAGAATTCTCTGAGCCGTCAGATGCTGAAAACAGTCTTGAACTTGGACTCAGTCAATGGAAGGTGCAGGCCCTCACTGCTTTAAAAGTTGGGGCAGCGGAACTCCGATCAATGTTTTTAAAGGGTGGTGGTATCCTTACTCTGGCAAAGATCTATCAATTGTTAGCTAGGAAGTTATCTGGGAAGGTGTTCTTAGAAGCTGCCAACTATCAACTGAAAAGGGATGTTGTTAGAAAGGGTGGACAATTAGCAGCTATTAATCTAGAATCCAGAGTTGCCTTGCTAGCTGCAAAACAAGGTTTTGCAGGGGCTACATCAAGATATCTTGGCTTGAGAAGCATGATGTCGTTACTTGGCCCAGTGCTTTGGGGAACATTTCTGGCTGATGTTGTCATTCAAATGCTAGGAACTGATTATGCAAGAATTTTGCGAGCAATTTATGCTTTTGCACAGATACGCATCACTCGCACTTATGGGTCACCGGTTGATGACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000245 GO:0000375 GO:0000377 GO:0000381 GO:0000398 GO:0003674 GO:0003676 GO:0003723 GO:0003729 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006139 GO:0006396 GO:0006397 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0008380 GO:0009987 GO:0010467 GO:0010468 GO:0010941 GO:0010942 GO:0016043 GO:0016070 GO:0016071 GO:0019219 GO:0019222 GO:0022607 GO:0022613 GO:0022618 GO:0031323 GO:0034622 GO:0034641 GO:0042981 GO:0043065 GO:0043067 GO:0043068 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043484 GO:0043933 GO:0044085 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0048024 GO:0048518 GO:0048522 GO:0050684 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065003 GO:0065007 GO:0071704 GO:0071826 GO:0071840 GO:0080090 GO:0090304 GO:0097159 GO:1901360 GO:1901363 GO:1903311

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

G-patch

Protein Analysis

351

Amino Acids

38.85

Weight (kDa)

8.65

Isoelectric Point (pI)

52.69

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002849)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G34140 AT4G34140 AT4G34140 AT4G34140 AT4G34140 AT4G34140 AT4G34140 AT4G34140 AT4G34140 AT4G34140
fragaria_vesca	FvH4_5g05850 FvH4_5g05850 FvH4_5g05850 FvH4_5g05850 FvH4_5g05850 FvH4_5g05850 FvH4_5g05850 FvH4_5g05850 FvH4_5g05850 FvH4_5g05850
malus_domestica	MD14G1175400.v1.1
prunus_persica	Prupe.5G169300_v2.0.a1 Prupe.5G169300_v2.0.a1 Prupe.5G169300_v2.0.a1 Prupe.5G169300_v2.0.a1
pyrus_communis	pycom14g14640
rosa_chinensis	RchiOBHm_Chr7g0192971
rosa_laevigata	RLG00000004306
rosa_multiflora	Rmu_sc0002040.1_g000065 Rmu_sc0013925.1_g000001
rosa_roxburghii	Rroxscaffold_3G00231200 Rroxscaffold_3G00262490
rosa_rugosa	Rorug07G0006900
rosa_samantha	Rh4DG172700 Rh7AG131900 Rh7BG132700 Rh7CG135900 Rh7DG133800
rosa_wichuraiana	Rw7G011250

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	297
AccII	CGCG	1 cut(s)	361
AciI	CCGC	4 cut(s)	6, 31, 380, 659
AclWI	GGATC	2 cut(s)	167, 327
AcsI	RAATTY	2 cut(s)	566, 984
AcuI	CTGAAG	2 cut(s)	241, 504
AfaI	GTAC	2 cut(s)	166, 192
AfiI	CCNNNNNNNGG	3 cut(s)	379, 399, 703
AgeI	ACCGGT	1 cut(s)	1042
AgsI	TTSAA	8 cut(s)	150, 197, 230, 314, 454, 494, 602, 959
AjiI	CACGTC	1 cut(s)	95
AluBI	AGCT	8 cut(s)	20, 70, 90, 252, 728, 761, 815, 848
AluI	AGCT	8 cut(s)	20, 70, 90, 252, 728, 761, 815, 848
Alw26I	GTCTC	1 cut(s)	516
AlwI	GGATC	2 cut(s)	167, 327
AlwNI	CAGNNNCTG	1 cut(s)	587
AoxI	GGCC	4 cut(s)	244, 410, 630, 916
ApeKI	GCWGC	8 cut(s)	8, 87, 140, 377, 656, 761, 812, 848
ApoI	RAATTY	2 cut(s)	566, 984
AseI	ATTAAT	1 cut(s)	819
AsiGI	ACCGGT	1 cut(s)	1042
Asp700I	GAANNNNTTC	1 cut(s)	749
AspLEI	GCGC	2 cut(s)	134, 160
AspS9I	GGNCC	4 cut(s)	245, 390, 631, 917
AsuHPI	GGTGA	2 cut(s)	46, 1032
AsuNHI	GCTAGC	1 cut(s)	844
AvaII	GGWCC	1 cut(s)	390
BauI	CACGAG	1 cut(s)	135
BbsI	GAAGAC	1 cut(s)	492
BbvI	GCAGC	7 cut(s)	99, 127, 389, 668, 748, 824, 835
BccI	CCATC	1 cut(s)	421
BceAI	ACGGC	1 cut(s)	562
BcgI	CGANNNNNNTGC	2 cut(s)	339, 373
BciVI	GTATCC	1 cut(s)	704
BcoDI	GTCTC	1 cut(s)	516
BfaI	CTAG	6 cut(s)	249, 563, 729, 824, 845, 965
BfuI	GTATCC	1 cut(s)	704
BglII	AGATCT	1 cut(s)	711
BisI	GCNGC	8 cut(s)	9, 88, 141, 378, 657, 762, 813, 849
BlsI	GCNGC	8 cut(s)	10, 89, 142, 379, 658, 763, 814, 850
BmcAI	AGTACT	1 cut(s)	192
Bme18I	GGWCC	1 cut(s)	390
BmgBI	CACGTC	1 cut(s)	95
BmgT120I	GGNCC	4 cut(s)	245, 390, 631, 917
BmrI	ACTGGG	1 cut(s)	914
BmsI	GCATC	3 cut(s)	373, 574, 1029
BmtI	GCTAGC	1 cut(s)	848
BmuI	ACTGGG	1 cut(s)	914
BpiI	GAAGAC	1 cut(s)	492
BpuEI	CTTGAG	4 cut(s)	344, 451, 514, 913
BsaBI	GATNNNNATC	1 cut(s)	1019
BsaWI	WCCGGW	1 cut(s)	1042
BsaXI	ACNNNNNCTCC	2 cut(s)	18, 48
Bsc4I	CCNNNNNNNGG	3 cut(s)	379, 399, 703
Bse118I	RCCGGY	1 cut(s)	1042
Bse1I	ACTGG	1 cut(s)	920
Bse3DI	GCAATG	1 cut(s)	312
Bse8I	GATNNNNATC	1 cut(s)	1019
BseGI	GGATG	2 cut(s)	388, 790
BseJI	GATNNNNATC	1 cut(s)	1019
BseLI	CCNNNNNNNGG	3 cut(s)	379, 399, 703
BseMI	GCAATG	1 cut(s)	312
BseMII	CTCAG	3 cut(s)	204, 564, 625
BseNI	ACTGG	1 cut(s)	920
BseRI	GAGGAG	1 cut(s)	341
BseXI	GCAGC	7 cut(s)	99, 127, 389, 668, 748, 824, 835
BsgI	GTGCAG	1 cut(s)	647
Bsh1236I	CGCG	1 cut(s)	361
BshFI	GGCC	4 cut(s)	246, 412, 632, 918
BshTI	ACCGGT	1 cut(s)	1042
BsiSI	CCGG	1 cut(s)	1043
BslI	CCNNNNNNNGG	3 cut(s)	379, 399, 703
BsmAI	GTCTC	1 cut(s)	516
BsnI	GGCC	4 cut(s)	246, 412, 632, 918
Bsp143I	GATC	5 cut(s)	172, 319, 334, 668, 711
Bsp68I	TCGCGA	1 cut(s)	361
BspACI	CCGC	4 cut(s)	6, 31, 380, 659
BspANI	GGCC	4 cut(s)	246, 412, 632, 918
BspCNI	CTCAG	3 cut(s)	205, 565, 624
BspFNI	CGCG	1 cut(s)	361
BspOI	GCTAGC	1 cut(s)	848
BspPI	GGATC	2 cut(s)	167, 327
BsrDI	GCAATG	1 cut(s)	312
BsrFI	RCCGGY	1 cut(s)	1042
BsrI	ACTGG	1 cut(s)	920
BssAI	RCCGGY	1 cut(s)	1042
BssMI	GATC	5 cut(s)	172, 319, 334, 668, 711
BssSI	CACGAG	1 cut(s)	135
Bst2BI	CACGAG	1 cut(s)	135
Bst4CI	ACNGT	1 cut(s)	596
Bst6I	CTCTTC	1 cut(s)	309
BstAPI	GCANNNNNTGC	2 cut(s)	383, 1001
BstC8I	GCNNGC	5 cut(s)	435, 560, 630, 846, 993
BstDEI	CTNAG	5 cut(s)	66, 213, 573, 611, 754
BstEII	GGTNACC	1 cut(s)	1038
BstF5I	GGATG	2 cut(s)	388, 790
BstFNI	CGCG	1 cut(s)	361
BstHHI	GCGC	2 cut(s)	134, 160
BstKTI	GATC	5 cut(s)	175, 322, 337, 671, 714
BstMAI	GTCTC	1 cut(s)	516
BstMBI	GATC	5 cut(s)	172, 319, 334, 668, 711
BstMWI	GCNNNNNNNGC	9 cut(s)	17, 140, 258, 383, 638, 845, 897, 1001, 1026
BstPI	GGTNACC	1 cut(s)	1038
BstUI	CGCG	1 cut(s)	361
BstV1I	GCAGC	7 cut(s)	99, 127, 389, 668, 748, 824, 835
BstV2I	GAAGAC	1 cut(s)	492
BstX2I	RGATCY	2 cut(s)	319, 711
BstXI	CCANNNNNNTGG	1 cut(s)	927
BstYI	RGATCY	2 cut(s)	319, 711
BsuI	GTATCC	1 cut(s)	704
BsuRI	GGCC	4 cut(s)	246, 412, 632, 918
BtrI	CACGTC	1 cut(s)	95
BtsCI	GGATG	2 cut(s)	388, 790
BtsI	GCAGTG	1 cut(s)	636
BtsIMutI	CAGTG	3 cut(s)	204, 636, 927
BtuMI	TCGCGA	1 cut(s)	361
Cac8I	GCNNGC	5 cut(s)	435, 560, 630, 846, 993
CaiI	CAGNNNCTG	1 cut(s)	587
CfoI	GCGC	2 cut(s)	134, 160
Cfr10I	RCCGGY	1 cut(s)	1042
Cfr13I	GGNCC	4 cut(s)	245, 390, 631, 917
Csp6I	GTAC	2 cut(s)	165, 191
CspAI	ACCGGT	1 cut(s)	1042
CviAII	CATG	1 cut(s)	901
CviQI	GTAC	2 cut(s)	165, 191
DdeI	CTNAG	5 cut(s)	66, 213, 573, 611, 754
DpnI	GATC	5 cut(s)	174, 321, 336, 670, 713
DpnII	GATC	5 cut(s)	172, 319, 334, 668, 711
DraI	TTTAAA	2 cut(s)	645, 681
Eam1104I	CTCTTC	1 cut(s)	309
EarI	CTCTTC	1 cut(s)	309
EciI	GGCGGA	1 cut(s)	20
Eco32I	GATATC	1 cut(s)	884
Eco47I	GGWCC	1 cut(s)	390
Eco57I	CTGAAG	2 cut(s)	241, 504
Eco91I	GGTNACC	1 cut(s)	1038
EcoO109I	RGGNCCY	1 cut(s)	631
EcoO65I	GGTNACC	1 cut(s)	1038
EcoRI	GAATTC	1 cut(s)	566
EcoRV	GATATC	1 cut(s)	884
FaeI	CATG	1 cut(s)	904
FalI	AAGNNNNNCTT	6 cut(s)	97, 129, 306, 338, 737, 769
FatI	CATG	1 cut(s)	900
FblI	GTMKAC	1 cut(s)	297
Fnu4HI	GCNGC	8 cut(s)	9, 88, 141, 378, 657, 762, 813, 849
FokI	GGATG	2 cut(s)	395, 797
Fsp4HI	GCNGC	8 cut(s)	9, 88, 141, 378, 657, 762, 813, 849
FspBI	CTAG	6 cut(s)	249, 563, 729, 824, 845, 965
GlaI	GCGC	2 cut(s)	133, 159
GluI	GCNGC	8 cut(s)	9, 88, 141, 378, 657, 762, 813, 849
HaeIII	GGCC	4 cut(s)	246, 412, 632, 918
HapII	CCGG	1 cut(s)	1043
HhaI	GCGC	2 cut(s)	134, 160
Hin1II	CATG	1 cut(s)	904
Hin6I	GCGC	2 cut(s)	132, 158
HinP1I	GCGC	2 cut(s)	132, 158
HincII	GTYRAC	1 cut(s)	298
HindII	GTYRAC	1 cut(s)	298
HinfI	GANTC	7 cut(s)	209, 234, 356, 363, 539, 609, 827
HpaII	CCGG	1 cut(s)	1043
HphI	GGTGA	2 cut(s)	46, 1032
Hpy166II	GTNNAC	3 cut(s)	298, 393, 803
Hpy188I	TCNGA	5 cut(s)	81, 214, 574, 583, 668
Hpy188III	TCNNGA	8 cut(s)	176, 323, 360, 543, 599, 824, 831, 879
Hpy8I	GTNNAC	3 cut(s)	298, 393, 803
Hpy99I	CGWCG	2 cut(s)	99, 299
HpyAV	CCTTC	4 cut(s)	49, 518, 616, 739
HpyCH4III	ACNGT	1 cut(s)	596
HpyCH4IV	ACGT	2 cut(s)	94, 294
HpyCH4V	TGCA	8 cut(s)	87, 305, 437, 628, 851, 866, 980, 1010
HpyF10VI	GCNNNNNNNGC	9 cut(s)	17, 140, 258, 383, 638, 845, 897, 1001, 1026
HpyF3I	CTNAG	5 cut(s)	66, 213, 573, 611, 754
HpySE526I	ACGT	2 cut(s)	94, 294
Hsp92II	CATG	1 cut(s)	904
HspAI	GCGC	2 cut(s)	132, 158
Kzo9I	GATC	5 cut(s)	172, 319, 334, 668, 711
LmnI	GCTCC	1 cut(s)	328
Lsp1109I	GCAGC	7 cut(s)	99, 127, 389, 668, 748, 824, 835
LweI	GCATC	3 cut(s)	373, 574, 1029
MaeI	CTAG	6 cut(s)	249, 563, 729, 824, 845, 965
MaeII	ACGT	2 cut(s)	94, 294
MaeIII	GTNAC	2 cut(s)	909, 1038
MalI	GATC	5 cut(s)	174, 321, 336, 670, 713
MboI	GATC	5 cut(s)	172, 319, 334, 668, 711
MboII	GAAGA	3 cut(s)	326, 497, 548
MfeI	CAATTG	1 cut(s)	719
MflI	RGATCY	2 cut(s)	319, 711
MluCI	AATT	6 cut(s)	473, 566, 719, 806, 984, 996
MlyI	GAGTC	2 cut(s)	365, 603
MmeI	TCCRAC	1 cut(s)	386
MroXI	GAANNNNTTC	1 cut(s)	749
MseI	TTAA	3 cut(s)	644, 680, 819
MslI	CAYNNNNRTG	1 cut(s)	959
MspA1I	CMGCKG	3 cut(s)	8, 380, 659
MspI	CCGG	1 cut(s)	1043
MunI	CAATTG	1 cut(s)	719
MvnI	CGCG	1 cut(s)	361
MwoI	GCNNNNNNNGC	9 cut(s)	17, 140, 258, 383, 638, 845, 897, 1001, 1026
NdeII	GATC	5 cut(s)	172, 319, 334, 668, 711
NheI	GCTAGC	1 cut(s)	844
NlaIII	CATG	1 cut(s)	904
NmuCI	GTSAC	1 cut(s)	1038
NruI	TCGCGA	1 cut(s)	361
PdmI	GAANNNNTTC	1 cut(s)	749
PfeI	GAWTC	5 cut(s)	209, 234, 363, 539, 827
PflFI	GACNNNGTC	1 cut(s)	612
PinAI	ACCGGT	1 cut(s)	1042
PkrI	GCNGC	8 cut(s)	10, 89, 142, 379, 658, 763, 814, 850
PleI	GAGTC	2 cut(s)	364, 603
PpsI	GAGTC	2 cut(s)	364, 603
PshBI	ATTAAT	1 cut(s)	819
PspEI	GGTNACC	1 cut(s)	1038
PspPI	GGNCC	4 cut(s)	245, 390, 631, 917
PstNI	CAGNNNCTG	1 cut(s)	587
PsuI	RGATCY	2 cut(s)	319, 711
PsyI	GACNNNGTC	1 cut(s)	612
RruI	TCGCGA	1 cut(s)	361
RsaI	GTAC	2 cut(s)	166, 192
RsaNI	GTAC	2 cut(s)	165, 191
RseI	CAYNNNNRTG	1 cut(s)	959
SalI	GTCGAC	1 cut(s)	296
SaqAI	TTAA	3 cut(s)	644, 680, 819
SatI	GCNGC	8 cut(s)	9, 88, 141, 378, 657, 762, 813, 849
Sau3AI	GATC	5 cut(s)	172, 319, 334, 668, 711
Sau96I	GGNCC	4 cut(s)	245, 390, 631, 917
ScaI	AGTACT	1 cut(s)	192
SchI	GAGTC	2 cut(s)	365, 603
SfaNI	GCATC	3 cut(s)	373, 574, 1029
SinI	GGWCC	1 cut(s)	390
SmiMI	CAYNNNNRTG	1 cut(s)	959
SmlI	CTYRAG	4 cut(s)	323, 466, 529, 892
SmoI	CTYRAG	4 cut(s)	323, 466, 529, 892
Sse9I	AATT	6 cut(s)	473, 566, 719, 806, 984, 996
SsiI	CCGC	4 cut(s)	6, 31, 380, 659
SspMI	CTAG	6 cut(s)	249, 563, 729, 824, 845, 965
TaaI	ACNGT	1 cut(s)	596
TaiI	ACGT	2 cut(s)	97, 297
TaqI	TCGA	2 cut(s)	297, 552
TaqII	GACCGA	2 cut(s)	87, 378
TasI	AATT	6 cut(s)	473, 566, 719, 806, 984, 996
TatI	WGTACW	1 cut(s)	190
TfiI	GAWTC	5 cut(s)	209, 234, 363, 539, 827
Tru1I	TTAA	3 cut(s)	644, 680, 819
Tru9I	TTAA	3 cut(s)	644, 680, 819
TscAI	CASTG	3 cut(s)	211, 643, 927
TseFI	GTSAC	1 cut(s)	1038
TseI	GCWGC	8 cut(s)	8, 87, 140, 377, 656, 761, 812, 848
Tsp45I	GTSAC	1 cut(s)	1038
TspDTI	ATGAA	1 cut(s)	500
TspGWI	ACGGA	1 cut(s)	173
TspRI	CASTG	3 cut(s)	211, 643, 927
Tth111I	GACNNNGTC	1 cut(s)	612
VpaK11BI	GGWCC	1 cut(s)	390
VspI	ATTAAT	1 cut(s)	819
XapI	RAATTY	2 cut(s)	566, 984
XbaI	TCTAGA	1 cut(s)	823
XmiI	GTMKAC	1 cut(s)	297
XmnI	GAANNNNTTC	1 cut(s)	749
XspI	CTAG	6 cut(s)	249, 563, 729, 824, 845, 965
ZrmI	AGTACT	1 cut(s)	192

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.