RchiOBHm_Chr7g0192971

G-patch domain

Basic Information

Type: gene
Biological Identity
rosa_chinensis
7
Physical Location & Seq
Forward (+)
11392118 .. 11395085
2968 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ17253

Sequence Viewer

Length: 1368 bp
ATGAAAATGGAGAGTCCGATTGCCACCGGATTACCCGACTCCCAGAACCCGGAAAATTCCTTCGTCTGGGACGAACAGTCTCAGCTCTACTTTCATGCCAGTACCGGATTCTACCATGACCCCAACGCTGGCTGGTACTACAGCACTCGCGACGGCCTTTATTACAAGTTCGAAGATGGAAACTACGTTCTTCTTCCCTCTCACCAGGGTAATAGTTTGGAAACCAGTCATGGCCAAATGGGTGCCACTGAGAATCCCATTCAAGAAGAGCCCTTCTCAGCTGTAGGCAATACAGAGTGCAGTAGCAGTGATGCACCTGAAAACCACCCTCCTCCCTCGGAATGGCTAGAGGATACGCTTATTGAACTATATTTGTCTGGTTATTCCAACTTAGAAGCCAATGCTGGTGATCGTGATACGGCGGCAGCGTACCCCGAAACATTTGTACCTGATGGGAACAATGATGGTCACGAGCTCAATGAATCCACGCCGATTCCAGAAGACTATGGTGCTGTAATTCAGTCGAGTGAAAATGTCTCTGATGAAGGTGGTTCATGGGATGAAGAGAACTGGCGAGCTCAGTATGGTCAGGTCGTTCAAGATGCAGAAGTGCCAATCCCGGAGTCTTCACTGATAAGTTTATGGGACTGGGAAATGGTCACAAAGCCAAGAAATGATGGAAAATGTGAGGTACCAAGGCCAAGGCTTGTTGGGAGGTTAGCAAAGCAGTCTGCTAAGCTTCATCCTTCTCTGCCGTCTGGTGGCGGTCTTTTAAAAACTGCTCCAATCTGTGAAGTGCATCTTGACCTGGTACGAGTCACAACAGGACAAGTTTATAAATTGAGGACTCCCAGTAAACAATATTTGGCCTCCATATCAACTTATGATTCTTCGAACCCAACCAAGTATTGGGGCTTCCCAGAATTAGCAGACAACAGAGAAGTCCTTCCGCACCCTAAATCCAGCGTAAGAGGTGATTCCAAAACTGCACATGTAATGGCATTCAGCAGGGGTTCATCGTCGTTGCCAGACACAGCACATGAAAAGCTTGAAAGCTATCAATATAGGGATAGAGCTGCTGATAGAAGAGCCTTGCATGGTGGTTTTGGTGTGGGTCCAGGACAGAAGAATTCAGTAGATGGTGATATTGATCGGCCAACACCTTCCACAGAGGAGGCTGCAGCAGAGGCCCTGAATATGTCATTTGGAGCTGGAAGTTACGCCCGGAAAGTTTTGGAAAGCATGGGCTGGAAGGAGGGGGAGACGCTTGGCAAGACTACAAAGGGATTAGTTGAACCTATTCAAGCACAAGGCAACATTGGTAGTGCTGGATTAGGGTGGCCTCGGGGAAGATTAAACCATCTTTGA

Protein Analysis

455

Amino Acids

49.84

Weight (kDa)

4.84

Isoelectric Point (pI)

41.44

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
OCRE PF17780 18 - 58 2.9e-08 OCRE domain
G-patch PF01585 407 - 446 2.8e-11 G-patch domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 837
Acc65I GGTACC 1 cut(s) 691
AccB1I GGYRCC 2 cut(s) 242, 691
AccB7I CCANNNNNTGG 1 cut(s) 909
AccII CGCG 1 cut(s) 150
AciI CCGC 3 cut(s) 422, 765, 950
AcoI YGGCCR 2 cut(s) 232, 1154
AcsI RAATTY 2 cut(s) 55, 1129
AfaI GTAC 6 cut(s) 103, 137, 431, 447, 693, 813
AfiI CCNNNNNNNGG 6 cut(s) 49, 66, 128, 342, 761, 909
AflIII ACRYGT 1 cut(s) 991
AgsI TTSAA 6 cut(s) 263, 365, 599, 1052, 1295, 1304
AhdI GACNNNNNGTC 1 cut(s) 76
AjnI CCWGG 3 cut(s) 204, 807, 1117
AloI GAACNNNNNNTCC 2 cut(s) 171, 203
AluBI AGCT 9 cut(s) 85, 281, 475, 578, 739, 1048, 1056, 1076, 1211
AluI AGCT 9 cut(s) 85, 281, 475, 578, 739, 1048, 1056, 1076, 1211
Alw21I GWGCWC 2 cut(s) 477, 580
Alw26I GTCTC 3 cut(s) 84, 541, 1256
Ama87I CYCGRG 1 cut(s) 1344
AoxI GGCC 7 cut(s) 154, 232, 698, 867, 1154, 1188, 1340
ApeKI GCWGC 4 cut(s) 425, 1076, 1178, 1181
ApoI RAATTY 2 cut(s) 55, 1129
Asp700I GAANNNNTTC 2 cut(s) 945, 1299
Asp718I GGTACC 1 cut(s) 691
AspS9I GGNCC 2 cut(s) 1115, 1189
AsuC2I CCSGG 3 cut(s) 50, 620, 1225
AsuHPI GGTGA 4 cut(s) 194, 419, 986, 1154
AsuII TTCGAA 2 cut(s) 171, 893
AvaI CYCGRG 1 cut(s) 1344
AvaII GGWCC 1 cut(s) 1115
BaeI ACNNNNGTAYC 2 cut(s) 429, 462
BalI TGGCCA 1 cut(s) 234
BanI GGYRCC 2 cut(s) 242, 691
BanII GRGCYC 3 cut(s) 273, 477, 580
BarI GAAGNNNNNNTAC 2 cut(s) 899, 931
BauI CACGAG 1 cut(s) 470
BbsI GAAGAC 2 cut(s) 507, 618
Bbv12I GWGCWC 2 cut(s) 477, 580
BbvI GCAGC 4 cut(s) 437, 1063, 1165, 1193
BccI CCATC 5 cut(s) 170, 446, 458, 671, 1133
BceAI ACGGC 3 cut(s) 169, 435, 739
BciT130I CCWGG 3 cut(s) 206, 809, 1119
BciVI GTATCC 1 cut(s) 346
BcnI CCSGG 3 cut(s) 50, 620, 1225
BcoDI GTCTC 3 cut(s) 84, 541, 1256
BfaI CTAG 1 cut(s) 347
BfmI CTRYAG 3 cut(s) 139, 282, 1179
BfuI GTATCC 1 cut(s) 346
BisI GCNGC 5 cut(s) 423, 426, 1077, 1179, 1182
BlpI GCTNAGC 1 cut(s) 735
BlsI GCNGC 5 cut(s) 424, 427, 1078, 1180, 1183
Bme1390I CCNGG 6 cut(s) 50, 206, 620, 809, 1119, 1225
Bme18I GGWCC 1 cut(s) 1115
BmeRI GACNNNNNGTC 1 cut(s) 76
BmeT110I CYCGRG 1 cut(s) 1344
BmgT120I GGNCC 2 cut(s) 1115, 1189
BmiI GGNNCC 3 cut(s) 244, 693, 1116
BmrFI CCNGG 6 cut(s) 50, 206, 620, 809, 1119, 1225
BmrI ACTGGG 2 cut(s) 658, 846
BmsI GCATC 3 cut(s) 301, 592, 808
BmuI ACTGGG 2 cut(s) 658, 846
BpiI GAAGAC 2 cut(s) 507, 618
BplI GAGNNNNNCTC 2 cut(s) 260, 292
Bpu1102I GCTNAGC 1 cut(s) 735
Bpu14I TTCGAA 2 cut(s) 171, 893
BpuMI CCSGG 3 cut(s) 50, 620, 1225
BsaBI GATNNNNATC 1 cut(s) 1149
BsaJI CCNNGG 5 cut(s) 205, 336, 695, 701, 1343
BsaWI WCCGGW 2 cut(s) 26, 104
Bsc4I CCNNNNNNNGG 6 cut(s) 49, 66, 128, 342, 761, 909
Bse1I ACTGG 5 cut(s) 99, 225, 575, 653, 852
Bse8I GATNNNNATC 1 cut(s) 1149
BseBI CCWGG 3 cut(s) 206, 809, 1119
BseDI CCNNGG 5 cut(s) 205, 336, 695, 701, 1343
BseGI GGATG 2 cut(s) 565, 742
BseJI GATNNNNATC 1 cut(s) 1149
BseLI CCNNNNNNNGG 6 cut(s) 49, 66, 128, 342, 761, 909
BseMII CTCAG 4 cut(s) 95, 240, 291, 593
BseNI ACTGG 5 cut(s) 99, 225, 575, 653, 852
BseRI GAGGAG 2 cut(s) 321, 1187
BseXI GCAGC 4 cut(s) 437, 1063, 1165, 1193
BsgI GTGCAG 2 cut(s) 319, 972
Bsh1236I CGCG 1 cut(s) 150
BshFI GGCC 7 cut(s) 156, 234, 700, 869, 1156, 1190, 1342
BshNI GGYRCC 2 cut(s) 242, 691
BsiHKAI GWGCWC 2 cut(s) 477, 580
BsiHKCI CYCGRG 1 cut(s) 1344
BsiSI CCGG 5 cut(s) 27, 50, 105, 620, 1225
BslFI GGGAC 2 cut(s) 83, 659
BslI CCNNNNNNNGG 6 cut(s) 49, 66, 128, 342, 761, 909
BsmAI GTCTC 3 cut(s) 84, 541, 1256
BsmBI CGTCTC 1 cut(s) 1256
BsmFI GGGAC 2 cut(s) 83, 659
BsmI GAATGC 1 cut(s) 1001
BsnI GGCC 7 cut(s) 156, 234, 700, 869, 1156, 1190, 1342
BsoBI CYCGRG 1 cut(s) 1344
Bsp119I TTCGAA 2 cut(s) 171, 893
Bsp1286I GDGCHC 3 cut(s) 273, 477, 580
Bsp143I GATC 2 cut(s) 409, 1150
Bsp1720I GCTNAGC 1 cut(s) 735
Bsp68I TCGCGA 1 cut(s) 150
BspACI CCGC 3 cut(s) 422, 765, 950
BspANI GGCC 7 cut(s) 156, 234, 700, 869, 1156, 1190, 1342
BspCNI CTCAG 4 cut(s) 94, 241, 290, 592
BspFNI CGCG 1 cut(s) 150
BspLI GGNNCC 3 cut(s) 244, 693, 1116
BspMAI CTGCAG 1 cut(s) 1183
BspQI GCTCTTC 2 cut(s) 261, 1081
BspT104I TTCGAA 2 cut(s) 171, 893
BspT107I GGYRCC 2 cut(s) 242, 691
BsrI ACTGG 5 cut(s) 99, 225, 575, 653, 852
BssECI CCNNGG 5 cut(s) 205, 336, 695, 701, 1343
BssMI GATC 2 cut(s) 409, 1150
BssSI CACGAG 1 cut(s) 470
BssT1I CCWWGG 2 cut(s) 695, 701
Bst2BI CACGAG 1 cut(s) 470
Bst2UI CCWGG 3 cut(s) 206, 809, 1119
Bst4CI ACNGT 1 cut(s) 78
Bst6I CTCTTC 3 cut(s) 261, 558, 1081
BstBI TTCGAA 2 cut(s) 171, 893
BstC8I GCNNGC 2 cut(s) 130, 576
BstDEI CTNAG 6 cut(s) 81, 249, 277, 391, 579, 735
BstF5I GGATG 2 cut(s) 565, 742
BstFNI CGCG 1 cut(s) 150
BstKTI GATC 2 cut(s) 412, 1153
BstMAI GTCTC 3 cut(s) 84, 541, 1256
BstMBI GATC 2 cut(s) 409, 1150
BstMWI GCNNNNNNNGC 1 cut(s) 1187
BstNI CCWGG 3 cut(s) 206, 809, 1119
BstNSI RCATGY 1 cut(s) 995
BstSCI CCNGG 6 cut(s) 48, 204, 618, 807, 1117, 1223
BstSFI CTRYAG 3 cut(s) 139, 282, 1179
BstUI CGCG 1 cut(s) 150
BstV1I GCAGC 4 cut(s) 437, 1063, 1165, 1193
BstV2I GAAGAC 2 cut(s) 507, 618
BsuI GTATCC 1 cut(s) 346
BsuRI GGCC 7 cut(s) 156, 234, 700, 869, 1156, 1190, 1342
BtsCI GGATG 2 cut(s) 565, 742
BtsI GCAGTG 1 cut(s) 313
BtsIMutI CAGTG 3 cut(s) 246, 313, 629
BtuMI TCGCGA 1 cut(s) 150
Cac8I GCNNGC 2 cut(s) 130, 576
Cfr13I GGNCC 2 cut(s) 1115, 1189
CseI GACGC 1 cut(s) 1273
CsiI ACCWGGT 1 cut(s) 807
Csp6I GTAC 6 cut(s) 102, 136, 430, 446, 692, 812
CviAII CATG 8 cut(s) 95, 116, 230, 555, 992, 1040, 1097, 1243
CviQI GTAC 6 cut(s) 102, 136, 430, 446, 692, 812
DdeI CTNAG 6 cut(s) 81, 249, 277, 391, 579, 735
DpnI GATC 2 cut(s) 411, 1152
DpnII GATC 2 cut(s) 409, 1150
DraI TTTAAA 1 cut(s) 774
DriI GACNNNNNGTC 1 cut(s) 76
EaeI YGGCCR 2 cut(s) 232, 1154
Eam1104I CTCTTC 3 cut(s) 261, 558, 1081
Eam1105I GACNNNNNGTC 1 cut(s) 76
EarI CTCTTC 3 cut(s) 261, 558, 1081
Ecl136II GAGCTC 2 cut(s) 475, 578
Eco130I CCWWGG 2 cut(s) 695, 701
Eco24I GRGCYC 3 cut(s) 273, 477, 580
Eco47I GGWCC 1 cut(s) 1115
Eco53kI GAGCTC 2 cut(s) 475, 578
Eco88I CYCGRG 1 cut(s) 1344
EcoICRI GAGCTC 2 cut(s) 475, 578
EcoO109I RGGNCCY 1 cut(s) 1189
EcoRI GAATTC 1 cut(s) 1129
EcoRII CCWGG 3 cut(s) 204, 807, 1117
EcoT14I CCWWGG 2 cut(s) 695, 701
EcoT38I GRGCYC 3 cut(s) 273, 477, 580
ErhI CCWWGG 2 cut(s) 695, 701
Esp3I CGTCTC 1 cut(s) 1256
FaeI CATG 8 cut(s) 98, 119, 233, 558, 995, 1043, 1100, 1246
FalI AAGNNNNNCTT 2 cut(s) 786, 818
FaqI GGGAC 2 cut(s) 83, 659
FatI CATG 8 cut(s) 94, 115, 229, 554, 991, 1039, 1096, 1242
Fnu4HI GCNGC 5 cut(s) 423, 426, 1077, 1179, 1182
FokI GGATG 2 cut(s) 572, 729
FriOI GRGCYC 3 cut(s) 273, 477, 580
Fsp4HI GCNGC 5 cut(s) 423, 426, 1077, 1179, 1182
FspBI CTAG 1 cut(s) 347
GluI GCNGC 5 cut(s) 423, 426, 1077, 1179, 1182
HaeIII GGCC 7 cut(s) 156, 234, 700, 869, 1156, 1190, 1342
HapII CCGG 5 cut(s) 27, 50, 105, 620, 1225
HgaI GACGC 1 cut(s) 1273
Hin1II CATG 8 cut(s) 98, 119, 233, 558, 995, 1043, 1100, 1246
HindIII AAGCTT 2 cut(s) 737, 1046
HpaII CCGG 5 cut(s) 27, 50, 105, 620, 1225
HphI GGTGA 4 cut(s) 194, 419, 986, 1154
Hpy166II GTNNAC 1 cut(s) 857
Hpy188I TCNGA 3 cut(s) 18, 340, 541
Hpy188III TCNNGA 7 cut(s) 149, 263, 413, 470, 497, 599, 803
Hpy8I GTNNAC 1 cut(s) 857
Hpy99I CGWCG 2 cut(s) 155, 1024
HpyAV CCTTC 7 cut(s) 70, 283, 539, 756, 956, 1173, 1246
HpyCH4III ACNGT 1 cut(s) 78
HpyCH4IV ACGT 1 cut(s) 186
HpyCH4V TGCA 7 cut(s) 300, 314, 605, 799, 989, 1096, 1181
HpyF10VI GCNNNNNNNGC 1 cut(s) 1187
HpyF3I CTNAG 6 cut(s) 81, 249, 277, 391, 579, 735
HpySE526I ACGT 1 cut(s) 186
Hsp92II CATG 8 cut(s) 98, 119, 233, 558, 995, 1043, 1100, 1246
KpnI GGTACC 1 cut(s) 695
Kzo9I GATC 2 cut(s) 409, 1150
LguI GCTCTTC 2 cut(s) 261, 1081
LmnI GCTCC 2 cut(s) 787, 1208
Lsp1109I GCAGC 4 cut(s) 437, 1063, 1165, 1193
LweI GCATC 3 cut(s) 301, 592, 808
MabI ACCWGGT 1 cut(s) 807
MaeI CTAG 1 cut(s) 347
MaeII ACGT 1 cut(s) 186
MaeIII GTNAC 4 cut(s) 467, 658, 817, 1217
MalI GATC 2 cut(s) 411, 1152
MboI GATC 2 cut(s) 409, 1150
MhlI GDGCHC 3 cut(s) 273, 477, 580
MlsI TGGCCA 1 cut(s) 234
MluCI AATT 5 cut(s) 55, 516, 839, 923, 1129
MluNI TGGCCA 1 cut(s) 234
MlyI GAGTC 5 cut(s) 22, 32, 632, 825, 841
MmeI TCCRAC 1 cut(s) 411
Mox20I TGGCCA 1 cut(s) 234
MroXI GAANNNNTTC 2 cut(s) 945, 1299
MscI TGGCCA 1 cut(s) 234
MseI TTAA 2 cut(s) 773, 1355
Msp20I TGGCCA 1 cut(s) 234
MspA1I CMGCKG 1 cut(s) 281
MspI CCGG 5 cut(s) 27, 50, 105, 620, 1225
MspR9I CCNGG 6 cut(s) 50, 206, 620, 809, 1119, 1225
Mva1269I GAATGC 1 cut(s) 1001
MvaI CCWGG 3 cut(s) 206, 809, 1119
MvnI CGCG 1 cut(s) 150
MwoI GCNNNNNNNGC 1 cut(s) 1187
NciI CCSGG 3 cut(s) 50, 620, 1225
NdeII GATC 2 cut(s) 409, 1150
NlaIII CATG 8 cut(s) 98, 119, 233, 558, 995, 1043, 1100, 1246
NlaIV GGNNCC 3 cut(s) 244, 693, 1116
NmuCI GTSAC 3 cut(s) 467, 658, 817
NruI TCGCGA 1 cut(s) 150
NspI RCATGY 1 cut(s) 995
NspV TTCGAA 2 cut(s) 171, 893
PciI ACATGT 1 cut(s) 991
PciSI GCTCTTC 2 cut(s) 261, 1081
PcsI WCGNNNNNNNCGW 2 cut(s) 69, 425
PctI GAATGC 1 cut(s) 1001
PdmI GAANNNNTTC 2 cut(s) 945, 1299
PfeI GAWTC 6 cut(s) 108, 253, 482, 493, 887, 977
PflMI CCANNNNNTGG 1 cut(s) 909
PfoI TCCNGGA 2 cut(s) 618, 1117
PkrI GCNGC 5 cut(s) 424, 427, 1078, 1180, 1183
PleI GAGTC 5 cut(s) 21, 32, 631, 824, 841
PpsI GAGTC 5 cut(s) 21, 32, 631, 824, 841
PscI ACATGT 1 cut(s) 991
PsiI TTATAA 1 cut(s) 837
Psp124BI GAGCTC 2 cut(s) 477, 580
Psp6I CCWGG 3 cut(s) 204, 807, 1117
PspGI CCWGG 3 cut(s) 204, 807, 1117
PspN4I GGNNCC 3 cut(s) 244, 693, 1116
PspPI GGNCC 2 cut(s) 1115, 1189
PstI CTGCAG 1 cut(s) 1183
PvuII CAGCTG 1 cut(s) 281
RruI TCGCGA 1 cut(s) 150
RsaI GTAC 6 cut(s) 103, 137, 431, 447, 693, 813
RsaNI GTAC 6 cut(s) 102, 136, 430, 446, 692, 812
SacI GAGCTC 2 cut(s) 477, 580
SapI GCTCTTC 2 cut(s) 261, 1081
SaqAI TTAA 2 cut(s) 773, 1355
SatI GCNGC 5 cut(s) 423, 426, 1077, 1179, 1182
Sau3AI GATC 2 cut(s) 409, 1150
Sau96I GGNCC 2 cut(s) 1115, 1189
SchI GAGTC 5 cut(s) 22, 32, 632, 825, 841
ScrFI CCNGG 6 cut(s) 50, 206, 620, 809, 1119, 1225
SduI GDGCHC 3 cut(s) 273, 477, 580
SexAI ACCWGGT 1 cut(s) 807
SfaNI GCATC 3 cut(s) 301, 592, 808
SfcI CTRYAG 3 cut(s) 139, 282, 1179
SfuI TTCGAA 2 cut(s) 171, 893
SinI GGWCC 1 cut(s) 1115
Sse9I AATT 5 cut(s) 55, 516, 839, 923, 1129
SsiI CCGC 3 cut(s) 422, 765, 950
SspI AATATT 1 cut(s) 863
SspMI CTAG 1 cut(s) 347
SstI GAGCTC 2 cut(s) 477, 580
StyD4I CCNGG 6 cut(s) 48, 204, 618, 807, 1117, 1223
StyI CCWWGG 2 cut(s) 695, 701
TaaI ACNGT 1 cut(s) 78
TaiI ACGT 1 cut(s) 189
TaqI TCGA 3 cut(s) 171, 524, 893
TasI AATT 5 cut(s) 55, 516, 839, 923, 1129
TauI GCSGC 1 cut(s) 425
TfiI GAWTC 6 cut(s) 108, 253, 482, 493, 887, 977
Tru1I TTAA 2 cut(s) 773, 1355
Tru9I TTAA 2 cut(s) 773, 1355
TscAI CASTG 3 cut(s) 253, 313, 636
TseFI GTSAC 3 cut(s) 467, 658, 817
TseI GCWGC 4 cut(s) 425, 1076, 1178, 1181
Tsp45I GTSAC 3 cut(s) 467, 658, 817
TspDTI ATGAA 9 cut(s) 17, 83, 495, 543, 558, 576, 731, 1005, 1056
TspRI CASTG 3 cut(s) 253, 313, 636
Van91I CCANNNNNTGG 1 cut(s) 909
VpaK11BI GGWCC 1 cut(s) 1115
XapI RAATTY 2 cut(s) 55, 1129
XceI RCATGY 1 cut(s) 995
XcmI CCANNNNNNNNNTGG 1 cut(s) 906
XmnI GAANNNNTTC 2 cut(s) 945, 1299
XspI CTAG 1 cut(s) 347
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.