Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4D

Orthogroup ID

OG0002849

Physical Location & Seq

Genomic Coordinates Reverse (-)

34399560 .. 34400728

Gene Structure 1169 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4DG172700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 549 bp

ATGGTCACAAAGCCAAGAAATGATGGAAAATGTGAGGTACCAAGGCCAAGGCTTGTTGGGAGGTTAGCGAAGCAGTCTGCTAAGCCGCATCCTTCTCTACCGTCTGGTAGTGGTCTTTTAAAAATTGCTCCAATCTGTGAAGTGCATCTTGACCTGGTACGAGTCACAACAGGACAAGTTTATAAATTGAGGACTCCCAGTAAACAATATTTGGCATCCTTATCAACTTATGATTCTTCGAACCCAACCAAGGATTGGGGCTTCCCAGAATTATCAGACAACAGAGAAGTCCTTCCACACTCTAAATCCAACGTAAGAGGTCATTCCAAAACTGCAGATGTAATGGCATTCAACAGGGGTTCATCATCGTTGCTAGACGCAGCACACGAAAAGCTTGAAAGCTATCAATATAGGGATAGAGCTGCTGATAGAAGAGCCTTGATTCTATGGAAAGCACTTCCGATCCTCTGCATTTTGAGCAATGGAAGAACTGTATGCAGTAGTGATTATGTTTGGAAGGCCTTGGATTTTTTATGCCAAAAGTTGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000245 GO:0000375 GO:0000377 GO:0000381 GO:0000398 GO:0003674 GO:0003676 GO:0003723 GO:0003729 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006139 GO:0006396 GO:0006397 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0008380 GO:0009987 GO:0010467 GO:0010468 GO:0010941 GO:0010942 GO:0016043 GO:0016070 GO:0016071 GO:0019219 GO:0019222 GO:0022607 GO:0022613 GO:0022618 GO:0031323 GO:0034622 GO:0034641 GO:0042981 GO:0043065 GO:0043067 GO:0043068 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043484 GO:0043933 GO:0044085 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0048024 GO:0048518 GO:0048522 GO:0050684 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065003 GO:0065007 GO:0071704 GO:0071826 GO:0071840 GO:0080090 GO:0090304 GO:0097159 GO:1901360 GO:1901363 GO:1903311

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

G-patch

Protein Analysis

182

Amino Acids

20.32

Weight (kDa)

9.62

Isoelectric Point (pI)

29.16

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002849)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G34140 AT4G34140 AT4G34140 AT4G34140 AT4G34140 AT4G34140 AT4G34140 AT4G34140 AT4G34140 AT4G34140
fragaria_vesca	FvH4_5g05850 FvH4_5g05850 FvH4_5g05850 FvH4_5g05850 FvH4_5g05850 FvH4_5g05850 FvH4_5g05850 FvH4_5g05850 FvH4_5g05850 FvH4_5g05850
malus_domestica	MD14G1175400.v1.1
prunus_persica	Prupe.5G169300_v2.0.a1 Prupe.5G169300_v2.0.a1 Prupe.5G169300_v2.0.a1 Prupe.5G169300_v2.0.a1
pyrus_communis	pycom14g14640
rosa_chinensis	RchiOBHm_Chr7g0192971
rosa_laevigata	RLG00000004306
rosa_multiflora	Rmu_sc0002040.1_g000065 Rmu_sc0013925.1_g000001
rosa_roxburghii	Rroxscaffold_3G00231200 Rroxscaffold_3G00262490
rosa_rugosa	Rorug07G0006900
rosa_samantha	Rh4DG172700 Rh7AG131900 Rh7BG132700 Rh7CG135900 Rh7DG133800
rosa_wichuraiana	Rw7G011250

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	183
Acc65I	GGTACC	1 cut(s)	37
AccB1I	GGYRCC	1 cut(s)	37
AccB7I	CCANNNNNTGG	1 cut(s)	255
AciI	CCGC	1 cut(s)	86
AclWI	GGATC	1 cut(s)	457
AfaI	GTAC	2 cut(s)	39, 159
AfiI	CCNNNNNNNGG	2 cut(s)	250, 255
AgsI	TTSAA	2 cut(s)	352, 398
AjnI	CCWGG	1 cut(s)	153
AluBI	AGCT	3 cut(s)	394, 402, 422
AluI	AGCT	3 cut(s)	394, 402, 422
AlwI	GGATC	1 cut(s)	457
AoxI	GGCC	2 cut(s)	44, 519
ApeKI	GCWGC	2 cut(s)	380, 422
Asp700I	GAANNNNTTC	1 cut(s)	291
Asp718I	GGTACC	1 cut(s)	37
AsuII	TTCGAA	1 cut(s)	239
BanI	GGYRCC	1 cut(s)	37
BbvI	GCAGC	2 cut(s)	392, 409
BccI	CCATC	1 cut(s)	17
BciT130I	CCWGG	1 cut(s)	155
BfaI	CTAG	1 cut(s)	374
BfmI	CTRYAG	1 cut(s)	333
BisI	GCNGC	3 cut(s)	86, 381, 423
BlpI	GCTNAGC	1 cut(s)	81
BlsI	GCNGC	3 cut(s)	87, 382, 424
Bme1390I	CCNGG	1 cut(s)	155
BmiI	GGNNCC	1 cut(s)	39
BmrFI	CCNGG	1 cut(s)	155
BmrI	ACTGGG	1 cut(s)	192
BmsI	GCATC	3 cut(s)	97, 154, 224
BmuI	ACTGGG	1 cut(s)	192
Bpu1102I	GCTNAGC	1 cut(s)	81
Bpu14I	TTCGAA	1 cut(s)	239
BsaJI	CCNNGG	4 cut(s)	41, 47, 249, 522
Bsc4I	CCNNNNNNNGG	2 cut(s)	250, 255
Bse1I	ACTGG	1 cut(s)	198
Bse3DI	GCAATG	1 cut(s)	487
BseBI	CCWGG	1 cut(s)	155
BseDI	CCNNGG	4 cut(s)	41, 47, 249, 522
BseGI	GGATG	2 cut(s)	88, 215
BseLI	CCNNNNNNNGG	2 cut(s)	250, 255
BseMI	GCAATG	1 cut(s)	487
BseNI	ACTGG	1 cut(s)	198
BseXI	GCAGC	2 cut(s)	392, 409
BshFI	GGCC	2 cut(s)	46, 521
BshNI	GGYRCC	1 cut(s)	37
BslI	CCNNNNNNNGG	2 cut(s)	250, 255
BsmI	GAATGC	1 cut(s)	347
BsnI	GGCC	2 cut(s)	46, 521
Bsp119I	TTCGAA	1 cut(s)	239
Bsp143I	GATC	1 cut(s)	462
Bsp1720I	GCTNAGC	1 cut(s)	81
BspACI	CCGC	1 cut(s)	86
BspANI	GGCC	2 cut(s)	46, 521
BspLI	GGNNCC	1 cut(s)	39
BspMAI	CTGCAG	1 cut(s)	337
BspPI	GGATC	1 cut(s)	457
BspQI	GCTCTTC	1 cut(s)	427
BspT104I	TTCGAA	1 cut(s)	239
BspT107I	GGYRCC	1 cut(s)	37
BsrDI	GCAATG	1 cut(s)	487
BsrI	ACTGG	1 cut(s)	198
BssECI	CCNNGG	4 cut(s)	41, 47, 249, 522
BssMI	GATC	1 cut(s)	462
BssT1I	CCWWGG	4 cut(s)	41, 47, 249, 522
Bst2UI	CCWGG	1 cut(s)	155
Bst4CI	ACNGT	2 cut(s)	102, 493
Bst6I	CTCTTC	1 cut(s)	427
BstBI	TTCGAA	1 cut(s)	239
BstDEI	CTNAG	1 cut(s)	81
BstF5I	GGATG	2 cut(s)	88, 215
BstKTI	GATC	1 cut(s)	465
BstMBI	GATC	1 cut(s)	462
BstMWI	GCNNNNNNNGC	1 cut(s)	477
BstNI	CCWGG	1 cut(s)	155
BstSCI	CCNGG	1 cut(s)	153
BstSFI	CTRYAG	1 cut(s)	333
BstV1I	GCAGC	2 cut(s)	392, 409
BsuRI	GGCC	2 cut(s)	46, 521
BtsCI	GGATG	2 cut(s)	88, 215
CseI	GACGC	1 cut(s)	386
CsiI	ACCWGGT	1 cut(s)	153
Csp6I	GTAC	2 cut(s)	38, 158
CviQI	GTAC	2 cut(s)	38, 158
DdeI	CTNAG	1 cut(s)	81
DpnI	GATC	1 cut(s)	464
DpnII	GATC	1 cut(s)	462
DraI	TTTAAA	1 cut(s)	120
Eam1104I	CTCTTC	1 cut(s)	427
EarI	CTCTTC	1 cut(s)	427
Eco130I	CCWWGG	4 cut(s)	41, 47, 249, 522
Eco147I	AGGCCT	1 cut(s)	521
EcoRII	CCWGG	1 cut(s)	153
EcoT14I	CCWWGG	4 cut(s)	41, 47, 249, 522
ErhI	CCWWGG	4 cut(s)	41, 47, 249, 522
FaiI	YATR	7 cut(s)	183, 231, 411, 448, 496, 510, 535
FalI	AAGNNNNNCTT	2 cut(s)	132, 164
Fnu4HI	GCNGC	3 cut(s)	86, 381, 423
FokI	GGATG	2 cut(s)	75, 202
Fsp4HI	GCNGC	3 cut(s)	86, 381, 423
FspBI	CTAG	1 cut(s)	374
GluI	GCNGC	3 cut(s)	86, 381, 423
HaeIII	GGCC	2 cut(s)	46, 521
HgaI	GACGC	1 cut(s)	386
HindIII	AAGCTT	1 cut(s)	392
HinfI	GANTC	4 cut(s)	162, 193, 233, 442
Hpy166II	GTNNAC	1 cut(s)	203
Hpy188I	TCNGA	2 cut(s)	277, 462
Hpy188III	TCNNGA	1 cut(s)	149
Hpy8I	GTNNAC	1 cut(s)	203
HpyAV	CCTTC	3 cut(s)	102, 302, 511
HpyCH4III	ACNGT	2 cut(s)	102, 493
HpyCH4IV	ACGT	1 cut(s)	312
HpyCH4V	TGCA	4 cut(s)	145, 335, 471, 498
HpyF10VI	GCNNNNNNNGC	1 cut(s)	477
HpyF3I	CTNAG	1 cut(s)	81
HpySE526I	ACGT	1 cut(s)	312
KpnI	GGTACC	1 cut(s)	41
Kzo9I	GATC	1 cut(s)	462
LguI	GCTCTTC	1 cut(s)	427
LmnI	GCTCC	1 cut(s)	133
LpnPI	CCDG	7 cut(s)	90, 140, 156, 167, 211, 279, 340
Lsp1109I	GCAGC	2 cut(s)	392, 409
LweI	GCATC	3 cut(s)	97, 154, 224
MabI	ACCWGGT	1 cut(s)	153
MaeI	CTAG	1 cut(s)	374
MaeII	ACGT	1 cut(s)	312
MaeIII	GTNAC	2 cut(s)	4, 163
MalI	GATC	1 cut(s)	464
MboI	GATC	1 cut(s)	462
MboII	GAAGA	3 cut(s)	228, 444, 498
MluCI	AATT	3 cut(s)	123, 185, 269
MlyI	GAGTC	2 cut(s)	171, 187
MmeI	TCCRAC	1 cut(s)	333
MnlI	CCTC	5 cut(s)	28, 54, 183, 311, 476
MroXI	GAANNNNTTC	1 cut(s)	291
MseI	TTAA	1 cut(s)	119
MspR9I	CCNGG	1 cut(s)	155
Mva1269I	GAATGC	1 cut(s)	347
MvaI	CCWGG	1 cut(s)	155
MwoI	GCNNNNNNNGC	1 cut(s)	477
NdeII	GATC	1 cut(s)	462
NlaIV	GGNNCC	1 cut(s)	39
NmuCI	GTSAC	2 cut(s)	4, 163
NspV	TTCGAA	1 cut(s)	239
PceI	AGGCCT	1 cut(s)	521
PciSI	GCTCTTC	1 cut(s)	427
PcsI	WCGNNNNNNNCGW	1 cut(s)	384
PctI	GAATGC	1 cut(s)	347
PdmI	GAANNNNTTC	1 cut(s)	291
PfeI	GAWTC	2 cut(s)	233, 442
PflMI	CCANNNNNTGG	1 cut(s)	255
PkrI	GCNGC	3 cut(s)	87, 382, 424
PleI	GAGTC	2 cut(s)	170, 187
PpsI	GAGTC	2 cut(s)	170, 187
PsiI	TTATAA	1 cut(s)	183
Psp6I	CCWGG	1 cut(s)	153
PspGI	CCWGG	1 cut(s)	153
PspN4I	GGNNCC	1 cut(s)	39
PstI	CTGCAG	1 cut(s)	337
RsaI	GTAC	2 cut(s)	39, 159
RsaNI	GTAC	2 cut(s)	38, 158
SapI	GCTCTTC	1 cut(s)	427
SaqAI	TTAA	1 cut(s)	119
SatI	GCNGC	3 cut(s)	86, 381, 423
Sau3AI	GATC	1 cut(s)	462
SchI	GAGTC	2 cut(s)	171, 187
ScrFI	CCNGG	1 cut(s)	155
SetI	ASST	8 cut(s)	39, 65, 156, 315, 322, 396, 404, 424
SexAI	ACCWGGT	1 cut(s)	153
SfaNI	GCATC	3 cut(s)	97, 154, 224
SfcI	CTRYAG	1 cut(s)	333
SfuI	TTCGAA	1 cut(s)	239
Sse9I	AATT	3 cut(s)	123, 185, 269
SseBI	AGGCCT	1 cut(s)	521
SsiI	CCGC	1 cut(s)	86
SspI	AATATT	1 cut(s)	209
SspMI	CTAG	1 cut(s)	374
StuI	AGGCCT	1 cut(s)	521
StyD4I	CCNGG	1 cut(s)	153
StyI	CCWWGG	4 cut(s)	41, 47, 249, 522
TaaI	ACNGT	2 cut(s)	102, 493
TaiI	ACGT	1 cut(s)	315
TaqI	TCGA	1 cut(s)	239
TasI	AATT	3 cut(s)	123, 185, 269
TauI	GCSGC	1 cut(s)	88
TfiI	GAWTC	2 cut(s)	233, 442
Tru1I	TTAA	1 cut(s)	119
Tru9I	TTAA	1 cut(s)	119
TseFI	GTSAC	2 cut(s)	4, 163
TseI	GCWGC	2 cut(s)	380, 422
Tsp45I	GTSAC	2 cut(s)	4, 163
TspDTI	ATGAA	1 cut(s)	351
Van91I	CCANNNNNTGG	1 cut(s)	255
XcmI	CCANNNNNNNNNTGG	1 cut(s)	252
XmnI	GAANNNNTTC	1 cut(s)	291
XspI	CTAG	1 cut(s)	374

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.