Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000003

Orthogroup ID

OG0002849

Physical Location & Seq

Genomic Coordinates Forward (+)

16165815 .. 16166975

Gene Structure 1161 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_3G00231200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 522 bp

ATGCCGGAGTCTTCACCGATAAGTTTATGGGACCGGGAAATGGTCACAAAGCCAAGAAATGATGGAAAATGTGAGGTACCAAGGCCAAGGCTTGTTGGGAGGTTAGCGAAGCGATCTGCTAAGCTGCATCCTTCTCTGCCGTCCGGTGGTGGTCTTTTAAAAACTGCTCCAATCGTGAAGTGCATCTCGACCTGGTACGAGTCACAACAGGACTCCCGTAAACAATATTTGGCCTCCTTATCAACTTATGATTCTTCGAACCCAACCAAGGATTGGGGCTTCCCGAATTATCGGACAACGAGAGAAGTCCTTCCACACTCTAAATCCAGCGTAAGAGGTGATTCCAAAACTGCAGATGTAATGGCATTCAGCGGGGGTTCATCATCGTTGCCGGACGCAGCACATGAAAAGCTTGAAAGCTATCAATATAGGGATAGAGCTGCTGATAGAAGAGCCTTGATTCTATGGAAAGCACTTCCGATCCTCTCGCATTTTGAGCAATGGAAGAACTGTATGCAGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000245 GO:0000375 GO:0000377 GO:0000381 GO:0000398 GO:0003674 GO:0003676 GO:0003723 GO:0003729 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006139 GO:0006396 GO:0006397 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0008380 GO:0009987 GO:0010467 GO:0010468 GO:0010941 GO:0010942 GO:0016043 GO:0016070 GO:0016071 GO:0019219 GO:0019222 GO:0022607 GO:0022613 GO:0022618 GO:0031323 GO:0034622 GO:0034641 GO:0042981 GO:0043065 GO:0043067 GO:0043068 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043484 GO:0043933 GO:0044085 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0048024 GO:0048518 GO:0048522 GO:0050684 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065003 GO:0065007 GO:0071704 GO:0071826 GO:0071840 GO:0080090 GO:0090304 GO:0097159 GO:1901360 GO:1901363 GO:1903311

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

G-patch

Protein Analysis

173

Amino Acids

19.52

Weight (kDa)

9.61

Isoelectric Point (pI)

50.54

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002849)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G34140 AT4G34140 AT4G34140 AT4G34140 AT4G34140 AT4G34140 AT4G34140 AT4G34140 AT4G34140 AT4G34140
fragaria_vesca	FvH4_5g05850 FvH4_5g05850 FvH4_5g05850 FvH4_5g05850 FvH4_5g05850 FvH4_5g05850 FvH4_5g05850 FvH4_5g05850 FvH4_5g05850 FvH4_5g05850
malus_domestica	MD14G1175400.v1.1
prunus_persica	Prupe.5G169300_v2.0.a1 Prupe.5G169300_v2.0.a1 Prupe.5G169300_v2.0.a1 Prupe.5G169300_v2.0.a1
pyrus_communis	pycom14g14640
rosa_chinensis	RchiOBHm_Chr7g0192971
rosa_laevigata	RLG00000004306
rosa_multiflora	Rmu_sc0002040.1_g000065 Rmu_sc0013925.1_g000001
rosa_roxburghii	Rroxscaffold_3G00231200 Rroxscaffold_3G00262490
rosa_rugosa	Rorug07G0006900
rosa_samantha	Rh4DG172700 Rh7AG131900 Rh7BG132700 Rh7CG135900 Rh7DG133800
rosa_wichuraiana	Rw7G011250

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	76
AccB1I	GGYRCC	1 cut(s)	76
AccB7I	CCANNNNNTGG	1 cut(s)	273
AciI	CCGC	1 cut(s)	372
AclWI	GGATC	1 cut(s)	475
AfaI	GTAC	2 cut(s)	78, 197
AfiI	CCNNNNNNNGG	4 cut(s)	40, 146, 268, 273
AgsI	TTSAA	1 cut(s)	416
AjnI	CCWGG	1 cut(s)	191
AluBI	AGCT	4 cut(s)	124, 412, 420, 440
AluI	AGCT	4 cut(s)	124, 412, 420, 440
AlwI	GGATC	1 cut(s)	475
AoxI	GGCC	2 cut(s)	83, 231
ApeKI	GCWGC	3 cut(s)	124, 398, 440
Asp700I	GAANNNNTTC	1 cut(s)	309
Asp718I	GGTACC	1 cut(s)	76
AspS9I	GGNCC	1 cut(s)	31
AsuC2I	CCSGG	1 cut(s)	35
AsuHPI	GGTGA	2 cut(s)	6, 350
AsuII	TTCGAA	1 cut(s)	257
AvaII	GGWCC	1 cut(s)	31
BanI	GGYRCC	1 cut(s)	76
BbsI	GAAGAC	1 cut(s)	3
BbvI	GCAGC	3 cut(s)	111, 410, 427
BccI	CCATC	1 cut(s)	56
BceAI	ACGGC	1 cut(s)	124
BciT130I	CCWGG	1 cut(s)	193
BcnI	CCSGG	1 cut(s)	35
BfmI	CTRYAG	1 cut(s)	351
BisI	GCNGC	3 cut(s)	125, 399, 441
BlpI	GCTNAGC	1 cut(s)	120
BlsI	GCNGC	3 cut(s)	126, 400, 442
Bme1390I	CCNGG	2 cut(s)	35, 193
Bme18I	GGWCC	1 cut(s)	31
BmgT120I	GGNCC	1 cut(s)	31
BmiI	GGNNCC	2 cut(s)	32, 78
BmrFI	CCNGG	2 cut(s)	35, 193
BmsI	GCATC	2 cut(s)	136, 192
BpiI	GAAGAC	1 cut(s)	3
Bpu1102I	GCTNAGC	1 cut(s)	120
Bpu14I	TTCGAA	1 cut(s)	257
BpuMI	CCSGG	1 cut(s)	35
BsaJI	CCNNGG	3 cut(s)	80, 86, 267
BsaWI	WCCGGW	1 cut(s)	143
Bsc4I	CCNNNNNNNGG	4 cut(s)	40, 146, 268, 273
Bse3DI	GCAATG	1 cut(s)	506
BseBI	CCWGG	1 cut(s)	193
BseDI	CCNNGG	3 cut(s)	80, 86, 267
BseGI	GGATG	1 cut(s)	127
BseLI	CCNNNNNNNGG	4 cut(s)	40, 146, 268, 273
BseMI	GCAATG	1 cut(s)	506
BseXI	GCAGC	3 cut(s)	111, 410, 427
BshFI	GGCC	2 cut(s)	85, 233
BshNI	GGYRCC	1 cut(s)	76
BsiSI	CCGG	4 cut(s)	5, 34, 144, 392
BslFI	GGGAC	1 cut(s)	44
BslI	CCNNNNNNNGG	4 cut(s)	40, 146, 268, 273
BsmFI	GGGAC	1 cut(s)	44
BsmI	GAATGC	1 cut(s)	365
BsnI	GGCC	2 cut(s)	85, 233
Bsp119I	TTCGAA	1 cut(s)	257
Bsp143I	GATC	2 cut(s)	113, 480
Bsp1720I	GCTNAGC	1 cut(s)	120
BspACI	CCGC	1 cut(s)	372
BspANI	GGCC	2 cut(s)	85, 233
BspLI	GGNNCC	2 cut(s)	32, 78
BspMAI	CTGCAG	1 cut(s)	355
BspPI	GGATC	1 cut(s)	475
BspQI	GCTCTTC	1 cut(s)	445
BspT104I	TTCGAA	1 cut(s)	257
BspT107I	GGYRCC	1 cut(s)	76
BsrDI	GCAATG	1 cut(s)	506
BssECI	CCNNGG	3 cut(s)	80, 86, 267
BssMI	GATC	2 cut(s)	113, 480
BssT1I	CCWWGG	3 cut(s)	80, 86, 267
Bst2UI	CCWGG	1 cut(s)	193
Bst4CI	ACNGT	1 cut(s)	512
Bst6I	CTCTTC	1 cut(s)	445
BstBI	TTCGAA	1 cut(s)	257
BstDEI	CTNAG	1 cut(s)	120
BstF5I	GGATG	1 cut(s)	127
BstKTI	GATC	2 cut(s)	116, 483
BstMBI	GATC	2 cut(s)	113, 480
BstMWI	GCNNNNNNNGC	1 cut(s)	496
BstNI	CCWGG	1 cut(s)	193
BstSCI	CCNGG	2 cut(s)	33, 191
BstSFI	CTRYAG	1 cut(s)	351
BstV1I	GCAGC	3 cut(s)	111, 410, 427
BstV2I	GAAGAC	1 cut(s)	3
BsuRI	GGCC	2 cut(s)	85, 233
BtsCI	GGATG	1 cut(s)	127
Cfr13I	GGNCC	1 cut(s)	31
CseI	GACGC	1 cut(s)	404
CsiI	ACCWGGT	1 cut(s)	191
Csp6I	GTAC	2 cut(s)	77, 196
CviAII	CATG	1 cut(s)	404
CviQI	GTAC	2 cut(s)	77, 196
DdeI	CTNAG	1 cut(s)	120
DpnI	GATC	2 cut(s)	115, 482
DpnII	GATC	2 cut(s)	113, 480
DraI	TTTAAA	1 cut(s)	159
Eam1104I	CTCTTC	1 cut(s)	445
EarI	CTCTTC	1 cut(s)	445
Eco130I	CCWWGG	3 cut(s)	80, 86, 267
Eco47I	GGWCC	1 cut(s)	31
EcoRII	CCWGG	1 cut(s)	191
EcoT14I	CCWWGG	3 cut(s)	80, 86, 267
ErhI	CCWWGG	3 cut(s)	80, 86, 267
FaeI	CATG	1 cut(s)	407
FaiI	YATR	6 cut(s)	28, 249, 405, 429, 466, 515
FaqI	GGGAC	1 cut(s)	44
FatI	CATG	1 cut(s)	403
FauI	CCCGC	1 cut(s)	365
Fnu4HI	GCNGC	3 cut(s)	125, 399, 441
FokI	GGATG	1 cut(s)	114
Fsp4HI	GCNGC	3 cut(s)	125, 399, 441
GluI	GCNGC	3 cut(s)	125, 399, 441
HaeIII	GGCC	2 cut(s)	85, 233
HapII	CCGG	4 cut(s)	5, 34, 144, 392
HgaI	GACGC	1 cut(s)	404
Hin1II	CATG	1 cut(s)	407
HindIII	AAGCTT	1 cut(s)	410
HinfI	GANTC	6 cut(s)	8, 200, 212, 251, 341, 460
HpaII	CCGG	4 cut(s)	5, 34, 144, 392
HphI	GGTGA	2 cut(s)	6, 350
Hpy166II	GTNNAC	1 cut(s)	221
Hpy188I	TCNGA	2 cut(s)	294, 480
Hpy188III	TCNNGA	3 cut(s)	175, 187, 283
Hpy8I	GTNNAC	1 cut(s)	221
HpyAV	CCTTC	2 cut(s)	141, 320
HpyCH4III	ACNGT	1 cut(s)	512
HpyCH4V	TGCA	4 cut(s)	127, 183, 353, 517
HpyF10VI	GCNNNNNNNGC	1 cut(s)	496
HpyF3I	CTNAG	1 cut(s)	120
Hsp92II	CATG	1 cut(s)	407
KpnI	GGTACC	1 cut(s)	80
Kzo9I	GATC	2 cut(s)	113, 480
LguI	GCTCTTC	1 cut(s)	445
LmnI	GCTCC	1 cut(s)	172
LpnPI	CCDG	8 cut(s)	18, 47, 157, 178, 194, 205, 340, 405
Lsp1109I	GCAGC	3 cut(s)	111, 410, 427
LweI	GCATC	2 cut(s)	136, 192
MabI	ACCWGGT	1 cut(s)	191
MaeIII	GTNAC	2 cut(s)	43, 201
MalI	GATC	2 cut(s)	115, 482
MboI	GATC	2 cut(s)	113, 480
MboII	GAAGA	4 cut(s)	3, 246, 462, 517
MluCI	AATT	1 cut(s)	286
MlyI	GAGTC	3 cut(s)	17, 206, 209
MnlI	CCTC	5 cut(s)	67, 93, 244, 329, 494
MroXI	GAANNNNTTC	1 cut(s)	309
MseI	TTAA	1 cut(s)	158
MspA1I	CMGCKG	1 cut(s)	372
MspI	CCGG	4 cut(s)	5, 34, 144, 392
MspR9I	CCNGG	2 cut(s)	35, 193
Mva1269I	GAATGC	1 cut(s)	365
MvaI	CCWGG	1 cut(s)	193
MwoI	GCNNNNNNNGC	1 cut(s)	496
NciI	CCSGG	1 cut(s)	35
NdeII	GATC	2 cut(s)	113, 480
NlaIII	CATG	1 cut(s)	407
NlaIV	GGNNCC	2 cut(s)	32, 78
NmuCI	GTSAC	2 cut(s)	43, 201
NspV	TTCGAA	1 cut(s)	257
PciSI	GCTCTTC	1 cut(s)	445
PctI	GAATGC	1 cut(s)	365
PdmI	GAANNNNTTC	1 cut(s)	309
PfeI	GAWTC	3 cut(s)	251, 341, 460
PflMI	CCANNNNNTGG	1 cut(s)	273
PkrI	GCNGC	3 cut(s)	126, 400, 442
PleI	GAGTC	3 cut(s)	16, 206, 208
PpsI	GAGTC	3 cut(s)	16, 206, 208
Psp6I	CCWGG	1 cut(s)	191
PspGI	CCWGG	1 cut(s)	191
PspN4I	GGNNCC	2 cut(s)	32, 78
PspPI	GGNCC	1 cut(s)	31
PstI	CTGCAG	1 cut(s)	355
RsaI	GTAC	2 cut(s)	78, 197
RsaNI	GTAC	2 cut(s)	77, 196
SapI	GCTCTTC	1 cut(s)	445
SaqAI	TTAA	1 cut(s)	158
SatI	GCNGC	3 cut(s)	125, 399, 441
Sau3AI	GATC	2 cut(s)	113, 480
Sau96I	GGNCC	1 cut(s)	31
SchI	GAGTC	3 cut(s)	17, 206, 209
ScrFI	CCNGG	2 cut(s)	35, 193
SetI	ASST	8 cut(s)	78, 104, 126, 194, 340, 414, 422, 442
SexAI	ACCWGGT	1 cut(s)	191
SfaNI	GCATC	2 cut(s)	136, 192
SfcI	CTRYAG	1 cut(s)	351
SfuI	TTCGAA	1 cut(s)	257
SinI	GGWCC	1 cut(s)	31
Sse9I	AATT	1 cut(s)	286
SsiI	CCGC	1 cut(s)	372
SspI	AATATT	1 cut(s)	227
StyD4I	CCNGG	2 cut(s)	33, 191
StyI	CCWWGG	3 cut(s)	80, 86, 267
TaaI	ACNGT	1 cut(s)	512
TaqI	TCGA	2 cut(s)	188, 257
TasI	AATT	1 cut(s)	286
TfiI	GAWTC	3 cut(s)	251, 341, 460
Tru1I	TTAA	1 cut(s)	158
Tru9I	TTAA	1 cut(s)	158
TseFI	GTSAC	2 cut(s)	43, 201
TseI	GCWGC	3 cut(s)	124, 398, 440
Tsp45I	GTSAC	2 cut(s)	43, 201
TspDTI	ATGAA	2 cut(s)	369, 420
Van91I	CCANNNNNTGG	1 cut(s)	273
VpaK11BI	GGWCC	1 cut(s)	31
XcmI	CCANNNNNNNNNTGG	1 cut(s)	270
XmnI	GAANNNNTTC	1 cut(s)	309

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.