Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0010133

Physical Location & Seq

Genomic Coordinates Reverse (-)

17509621 .. 17511364

Gene Structure 1744 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT4G37200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 786 bp

ATGGCTCGCTTAGTATTTTCTTTAAACCTTCCATCTAGTCATGGATTCAATCTCAGTCCTCGAAATCTTCAATCTTTCTTCGTTACCCAAACAGGAGCTCCACGATTTCGCGCTGTTCGTTGCAAACCAAACCCAGAATCTTCCGAAACCAAACAGGAGAAATTGGTAATAGATAATGGTGAAACTTCATCTGCATCGAAGGAAGTGGAATCATCATCATCTGTTGCTGACTCTTCTTCTTCTTCTTCTTCGGGATTCCCTGAATCTCCCAATAAGGATATCAATAGAAGAGTTGCGGCTGTTACTGTAATCGCGGCTTTGTCGTTATTTGTATCGACAAGGCTCGATTTTGGGATTTCTTTGAAGGATTTAACCGCTTCTGCGTTGCCTTACGAGGAGGCGTTATCGAATGGGAAGCCGACTGTTGTTGAGTTCTATGCAGATTGGTGTGAAGTTTGTCGAGAACTAGCTCCTGATGTTTATAAAATCGAGCAGCAATACAAGGACAAAGTTAACTTTGTGATGCTAAATGTGGACAACACGAAATGGGAGCAAGAGTTGGATGAGTTTGGTGTTGAGGGTATTCCTCATTTCGCCTTCCTCGATAGAGAAGGGAACGAAGAAGGTAATGTGGTCGGGAGGCTCCCAAGACAGTATTTAGTTGAAAATGTGAATGCGCTTGCAGCCGGGAAACAATCAATTCCTTATGCCCGAGCCGTGGGACAGTACTCAAGCTCAGAGTCTCGTAAGGTGCATCAGGTTACTGATCCCTTAAGCCATGGATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004791 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006950 GO:0006979 GO:0008150 GO:0008152 GO:0009507 GO:0009534 GO:0009535 GO:0009536 GO:0009579 GO:0009636 GO:0009987 GO:0010190 GO:0015035 GO:0015036 GO:0016020 GO:0016043 GO:0016209 GO:0016491 GO:0016651 GO:0016667 GO:0016668 GO:0016671 GO:0017004 GO:0019725 GO:0022607 GO:0031976 GO:0031977 GO:0031984 GO:0033554 GO:0034357 GO:0034599 GO:0034622 GO:0042221 GO:0042592 GO:0042651 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043933 GO:0044085 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044436 GO:0044444 GO:0044446 GO:0044464 GO:0045454 GO:0047134 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0055035 GO:0055114 GO:0065003 GO:0065007 GO:0065008 GO:0070887 GO:0071840 GO:0097237 GO:0098754 GO:0098869 GO:1990748

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Thioredoxin

Protein Analysis

261

Amino Acids

28.74

Weight (kDa)

5.26

Isoelectric Point (pI)

42.6

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Thioredoxin	PF00085	131 - 225	3.5e-20	Thioredoxin
Thioredoxin_7	PF13899	131 - 202	2e-09	Thioredoxin-like
Thioredoxin_2	PF13098	136 - 219	1.9e-09	Thioredoxin-like domain
Redoxin	PF08534	137 - 205	1.5e-06	Redoxin
Thioredoxin_8	PF13905	138 - 189	4.5e-07	Thioredoxin-like

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Orthologous Genes (Group: OG0010133)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G37200
fragaria_vesca	FvH4_1g14520
malus_domestica	MD02G1158600.v1.1 MD15G1273400.v1.1 MD17G1248400.v1.1
prunus_persica	Prupe.7G145200_v2.0.a1
pyrus_communis	pycom02g12510 pycom15g23650 pycom17g24960 pycom17g25120
rosa_chinensis	RchiOBHm_Chr2g0103261
rosa_laevigata	RLG00000017219
rosa_multiflora	Rmu_sc0006743.1_g000012
rosa_roxburghii	Rroxscaffold_2G00139800
rosa_rugosa	Rorug02G0112900 Rorug02G0113000
rosa_samantha	Rh2AG161600 Rh2BG168500 Rh2CG168500 Rh2DG167400
rosa_wichuraiana	Rw2G012690

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	483
AccII	CGCG	2 cut(s)	111, 314
AciI	CCGC	3 cut(s)	296, 314, 375
AclWI	GGATC	1 cut(s)	761
AfaI	GTAC	1 cut(s)	728
AfiI	CCNNNNNNNGG	1 cut(s)	718
AflII	CTTAAG	1 cut(s)	772
AgsI	TTSAA	4 cut(s)	49, 71, 364, 665
AluBI	AGCT	3 cut(s)	98, 470, 735
AluI	AGCT	3 cut(s)	98, 470, 735
Alw21I	GWGCWC	1 cut(s)	100
Alw26I	GTCTC	1 cut(s)	747
AlwI	GGATC	1 cut(s)	761
Ama87I	CYCGRG	1 cut(s)	711
ApeKI	GCWGC	2 cut(s)	493, 683
AspLEI	GCGC	2 cut(s)	113, 679
AsuC2I	CCSGG	1 cut(s)	688
AsuHPI	GGTGA	1 cut(s)	191
AvaI	CYCGRG	1 cut(s)	711
BanII	GRGCYC	1 cut(s)	100
Bbv12I	GWGCWC	1 cut(s)	100
BbvI	GCAGC	2 cut(s)	505, 695
BccI	CCATC	1 cut(s)	40
BceAI	ACGGC	1 cut(s)	701
BcnI	CCSGG	1 cut(s)	688
BcoDI	GTCTC	1 cut(s)	747
BfaI	CTAG	2 cut(s)	36, 467
BfrI	CTTAAG	1 cut(s)	772
BisI	GCNGC	4 cut(s)	297, 315, 494, 684
BlsI	GCNGC	4 cut(s)	298, 316, 495, 685
BmcAI	AGTACT	1 cut(s)	728
Bme1390I	CCNGG	1 cut(s)	688
BmeT110I	CYCGRG	1 cut(s)	711
BmiI	GGNNCC	1 cut(s)	644
BmrFI	CCNGG	1 cut(s)	688
BmsI	GCATC	3 cut(s)	203, 513, 763
BpuEI	CTTGAG	1 cut(s)	715
BpuMI	CCSGG	1 cut(s)	688
BsaJI	CCNNGG	2 cut(s)	717, 778
BsaXI	ACNNNNNCTCC	4 cut(s)	82, 112, 542, 572
Bsc4I	CCNNNNNNNGG	1 cut(s)	718
BseDI	CCNNGG	2 cut(s)	717, 778
BseGI	GGATG	1 cut(s)	568
BseLI	CCNNNNNNNGG	1 cut(s)	718
BseMII	CTCAG	2 cut(s)	67, 750
BseRI	GAGGAG	1 cut(s)	410
BseXI	GCAGC	2 cut(s)	505, 695
Bsh1236I	CGCG	2 cut(s)	111, 314
BsiHKAI	GWGCWC	1 cut(s)	100
BsiHKCI	CYCGRG	1 cut(s)	711
BsiSI	CCGG	1 cut(s)	687
BslFI	GGGAC	1 cut(s)	735
BslI	CCNNNNNNNGG	1 cut(s)	718
BsmAI	GTCTC	1 cut(s)	747
BsmFI	GGGAC	1 cut(s)	735
BsmI	GAATGC	1 cut(s)	679
BsoBI	CYCGRG	1 cut(s)	711
Bsp1286I	GDGCHC	1 cut(s)	100
Bsp143I	GATC	1 cut(s)	766
Bsp19I	CCATGG	1 cut(s)	778
BspACI	CCGC	3 cut(s)	296, 314, 375
BspCNI	CTCAG	2 cut(s)	66, 749
BspFNI	CGCG	2 cut(s)	111, 314
BspLI	GGNNCC	1 cut(s)	644
BspPI	GGATC	1 cut(s)	761
BspTI	CTTAAG	1 cut(s)	772
BssECI	CCNNGG	2 cut(s)	717, 778
BssMI	GATC	1 cut(s)	766
BssT1I	CCWWGG	1 cut(s)	778
Bst4CI	ACNGT	4 cut(s)	307, 424, 654, 726
Bst6I	CTCTTC	2 cut(s)	238, 283
BstAFI	CTTAAG	1 cut(s)	772
BstC8I	GCNNGC	2 cut(s)	7, 681
BstDEI	CTNAG	3 cut(s)	10, 53, 736
BstDSI	CCRYGG	2 cut(s)	717, 778
BstF5I	GGATG	1 cut(s)	568
BstFNI	CGCG	2 cut(s)	111, 314
BstHHI	GCGC	2 cut(s)	113, 679
BstKTI	GATC	1 cut(s)	769
BstMAI	GTCTC	1 cut(s)	747
BstMBI	GATC	1 cut(s)	766
BstMWI	GCNNNNNNNGC	1 cut(s)	683
BstSCI	CCNGG	1 cut(s)	686
BstUI	CGCG	2 cut(s)	111, 314
BstV1I	GCAGC	2 cut(s)	505, 695
BtgI	CCRYGG	2 cut(s)	717, 778
BtsCI	GGATG	1 cut(s)	568
Cac8I	GCNNGC	2 cut(s)	7, 681
CfoI	GCGC	2 cut(s)	113, 679
Csp6I	GTAC	1 cut(s)	727
CviAII	CATG	2 cut(s)	41, 779
CviQI	GTAC	1 cut(s)	727
DdeI	CTNAG	3 cut(s)	10, 53, 736
DpnI	GATC	1 cut(s)	768
DpnII	GATC	1 cut(s)	766
DraI	TTTAAA	1 cut(s)	24
Eam1104I	CTCTTC	2 cut(s)	238, 283
EarI	CTCTTC	2 cut(s)	238, 283
Ecl136II	GAGCTC	1 cut(s)	98
Eco130I	CCWWGG	1 cut(s)	778
Eco24I	GRGCYC	1 cut(s)	100
Eco32I	GATATC	1 cut(s)	280
Eco53kI	GAGCTC	1 cut(s)	98
Eco88I	CYCGRG	1 cut(s)	711
EcoICRI	GAGCTC	1 cut(s)	98
EcoRV	GATATC	1 cut(s)	280
EcoT14I	CCWWGG	1 cut(s)	778
EcoT38I	GRGCYC	1 cut(s)	100
ErhI	CCWWGG	1 cut(s)	778
FaeI	CATG	2 cut(s)	44, 782
FaiI	YATR	5 cut(s)	42, 438, 483, 708, 780
FaqI	GGGAC	1 cut(s)	735
FatI	CATG	2 cut(s)	40, 778
Fnu4HI	GCNGC	4 cut(s)	297, 315, 494, 684
FokI	GGATG	1 cut(s)	575
FriOI	GRGCYC	1 cut(s)	100
Fsp4HI	GCNGC	4 cut(s)	297, 315, 494, 684
FspBI	CTAG	2 cut(s)	36, 467
GlaI	GCGC	2 cut(s)	112, 678
GluI	GCNGC	4 cut(s)	297, 315, 494, 684
HapII	CCGG	1 cut(s)	687
HhaI	GCGC	2 cut(s)	113, 679
Hin1II	CATG	2 cut(s)	44, 782
Hin6I	GCGC	2 cut(s)	111, 677
HinP1I	GCGC	2 cut(s)	111, 677
HincII	GTYRAC	1 cut(s)	514
HindII	GTYRAC	1 cut(s)	514
HinfI	GANTC	7 cut(s)	45, 137, 209, 230, 255, 263, 740
HpaI	GTTAAC	1 cut(s)	514
HpaII	CCGG	1 cut(s)	687
HphI	GGTGA	1 cut(s)	191
Hpy166II	GTNNAC	2 cut(s)	514, 535
Hpy188I	TCNGA	2 cut(s)	145, 739
Hpy188III	TCNNGA	4 cut(s)	252, 461, 473, 637
Hpy8I	GTNNAC	2 cut(s)	514, 535
HpyAV	CCTTC	6 cut(s)	38, 193, 358, 605, 607, 617
HpyCH4III	ACNGT	4 cut(s)	307, 424, 654, 726
HpyCH4V	TGCA	5 cut(s)	123, 194, 440, 683, 754
HpyF10VI	GCNNNNNNNGC	1 cut(s)	683
HpyF3I	CTNAG	3 cut(s)	10, 53, 736
Hsp92II	CATG	2 cut(s)	44, 782
HspAI	GCGC	2 cut(s)	111, 677
KspAI	GTTAAC	1 cut(s)	514
Kzo9I	GATC	1 cut(s)	766
LmnI	GCTCC	5 cut(s)	95, 103, 475, 550, 648
LpnPI	CCDG	7 cut(s)	78, 140, 147, 273, 486, 700, 743
Lsp1109I	GCAGC	2 cut(s)	505, 695
LweI	GCATC	3 cut(s)	203, 513, 763
MaeI	CTAG	2 cut(s)	36, 467
MaeIII	GTNAC	3 cut(s)	82, 301, 760
MalI	GATC	1 cut(s)	768
MboI	GATC	1 cut(s)	766
MhlI	GDGCHC	1 cut(s)	100
MluCI	AATT	2 cut(s)	161, 699
MlyI	GAGTC	2 cut(s)	224, 749
MmeI	TCCRAC	1 cut(s)	540
MnlI	CCTC	7 cut(s)	69, 388, 391, 571, 597, 611, 633
MseI	TTAA	4 cut(s)	23, 371, 513, 773
MspCI	CTTAAG	1 cut(s)	772
MspI	CCGG	1 cut(s)	687
MspR9I	CCNGG	1 cut(s)	688
Mva1269I	GAATGC	1 cut(s)	679
MvnI	CGCG	2 cut(s)	111, 314
MwoI	GCNNNNNNNGC	1 cut(s)	683
NciI	CCSGG	1 cut(s)	688
NcoI	CCATGG	1 cut(s)	778
NdeII	GATC	1 cut(s)	766
NlaIII	CATG	2 cut(s)	44, 782
NlaIV	GGNNCC	1 cut(s)	644
PcsI	WCGNNNNNNNCGW	2 cut(s)	115, 600
PctI	GAATGC	1 cut(s)	679
PfeI	GAWTC	5 cut(s)	45, 137, 209, 255, 263
PkrI	GCNGC	4 cut(s)	298, 316, 495, 685
PleI	GAGTC	2 cut(s)	224, 748
PpsI	GAGTC	2 cut(s)	224, 748
PsiI	TTATAA	1 cut(s)	483
Psp124BI	GAGCTC	1 cut(s)	100
PspN4I	GGNNCC	1 cut(s)	644
RsaI	GTAC	1 cut(s)	728
RsaNI	GTAC	1 cut(s)	727
SacI	GAGCTC	1 cut(s)	100
SaqAI	TTAA	4 cut(s)	23, 371, 513, 773
SatI	GCNGC	4 cut(s)	297, 315, 494, 684
Sau3AI	GATC	1 cut(s)	766
ScaI	AGTACT	1 cut(s)	728
SchI	GAGTC	2 cut(s)	224, 749
ScrFI	CCNGG	1 cut(s)	688
SduI	GDGCHC	1 cut(s)	100
SetI	ASST	7 cut(s)	30, 100, 472, 628, 737, 753, 762
SfaNI	GCATC	3 cut(s)	203, 513, 763
SmlI	CTYRAG	2 cut(s)	730, 772
SmoI	CTYRAG	2 cut(s)	730, 772
Sse9I	AATT	2 cut(s)	161, 699
SsiI	CCGC	3 cut(s)	296, 314, 375
SspMI	CTAG	2 cut(s)	36, 467
SstI	GAGCTC	1 cut(s)	100
StyD4I	CCNGG	1 cut(s)	686
StyI	CCWWGG	1 cut(s)	778
TaaI	ACNGT	4 cut(s)	307, 424, 654, 726
TaqI	TCGA	8 cut(s)	61, 197, 335, 345, 407, 460, 489, 603
TasI	AATT	2 cut(s)	161, 699
TatI	WGTACW	1 cut(s)	726
TauI	GCSGC	2 cut(s)	299, 317
TfiI	GAWTC	5 cut(s)	45, 137, 209, 255, 263
Tru1I	TTAA	4 cut(s)	23, 371, 513, 773
Tru9I	TTAA	4 cut(s)	23, 371, 513, 773
TseI	GCWGC	2 cut(s)	493, 683
TspDTI	ATGAA	1 cut(s)	177
Vha464I	CTTAAG	1 cut(s)	772
XspI	CTAG	2 cut(s)	36, 467
ZrmI	AGTACT	1 cut(s)	728

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.