Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2A

Orthogroup ID

OG0010133

Physical Location & Seq

Genomic Coordinates Forward (+)

15253258 .. 15255440

Gene Structure 2183 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2AG161600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 561 bp

ATGAGTAGTTCCTCGACAGACCCAGCTGGCATTCCGGAATTTCCAAACAAAAATACCAACAGGCAAGTAGCAGTGGTTTCTACTCTTGCGGCATTAGCACTTTTCTTATCAGGACGGCTCGATTTTGGTGTTTCTTTAAAGGACCTAACTGTTGCTGCATTACCTTACGAAGAGGCTCTCTCGAATGGCAAACCTACTGTTGTTGAGTTCTATGCTGATTGGTGTGAAGTATGCAGGGAATTAGCTCCAGATGTCTACAAAGTTGAGCAGCAGTATAAGGGTCGTGTAAATTTTGTTATGCTCAATGTTGACAACACAAAGTGGGAACAGGAGCTTGATGAGTTTGGTGTTGAGGGTATTCCACACTTTGCATTCCTAGATAAAGAGGGAAATGAAGAGGGCAATGTTACTGGCAGGCTCCCAGAAAAGTACTTGCGTGAGAATGTGGATGCCCTCTCCCGCGGAGAAGCCTCCATACCTCATGCCCGTGTAGTGGGGCAATATTCCAGTGCTGAAAACAGAAAGGTTCACCAAGTTGTGGATCCAAGAAGTCACGGATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004791 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006950 GO:0006979 GO:0008150 GO:0008152 GO:0009507 GO:0009534 GO:0009535 GO:0009536 GO:0009579 GO:0009636 GO:0009987 GO:0010190 GO:0015035 GO:0015036 GO:0016020 GO:0016043 GO:0016209 GO:0016491 GO:0016651 GO:0016667 GO:0016668 GO:0016671 GO:0017004 GO:0019725 GO:0022607 GO:0031976 GO:0031977 GO:0031984 GO:0033554 GO:0034357 GO:0034599 GO:0034622 GO:0042221 GO:0042592 GO:0042651 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043933 GO:0044085 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044436 GO:0044444 GO:0044446 GO:0044464 GO:0045454 GO:0047134 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0055035 GO:0055114 GO:0065003 GO:0065007 GO:0065008 GO:0070887 GO:0071840 GO:0097237 GO:0098754 GO:0098869 GO:1990748

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Thioredoxin

Protein Analysis

186

Amino Acids

20.63

Weight (kDa)

4.96

Isoelectric Point (pI)

22.27

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Thioredoxin	PF00085	55 - 150	3.4e-20	Thioredoxin
Thioredoxin_7	PF13899	56 - 127	3.3e-10	Thioredoxin-like
Thioredoxin_2	PF13098	60 - 145	9.6e-10	Thioredoxin-like domain
Thioredoxin_8	PF13905	63 - 125	1.2e-06	Thioredoxin-like

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0010133)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G37200
fragaria_vesca	FvH4_1g14520
malus_domestica	MD02G1158600.v1.1 MD15G1273400.v1.1 MD17G1248400.v1.1
prunus_persica	Prupe.7G145200_v2.0.a1
pyrus_communis	pycom02g12510 pycom15g23650 pycom17g24960 pycom17g25120
rosa_chinensis	RchiOBHm_Chr2g0103261
rosa_laevigata	RLG00000017219
rosa_multiflora	Rmu_sc0006743.1_g000012
rosa_roxburghii	Rroxscaffold_2G00139800
rosa_rugosa	Rorug02G0112900 Rorug02G0113000
rosa_samantha	Rh2AG161600 Rh2BG168500 Rh2CG168500 Rh2DG167400
rosa_wichuraiana	Rw2G012690

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	538
AccI	GTMKAC	1 cut(s)	255
AccII	CGCG	1 cut(s)	462
AccIII	TCCGGA	1 cut(s)	34
AciI	CCGC	3 cut(s)	89, 460, 462
AclWI	GGATC	2 cut(s)	536, 549
AcsI	RAATTY	2 cut(s)	38, 289
AdeI	CACNNNGTG	1 cut(s)	321
AfaI	GTAC	1 cut(s)	431
AfiI	CCNNNNNNNGG	2 cut(s)	493, 538
AluBI	AGCT	3 cut(s)	26, 245, 334
AluI	AGCT	3 cut(s)	26, 245, 334
AlwI	GGATC	2 cut(s)	536, 549
Aor13HI	TCCGGA	1 cut(s)	34
ApeKI	GCWGC	2 cut(s)	155, 268
ApoI	RAATTY	2 cut(s)	38, 289
AspS9I	GGNCC	1 cut(s)	142
AsuHPI	GGTGA	1 cut(s)	521
AvaII	GGWCC	1 cut(s)	142
BamHI	GGATCC	1 cut(s)	541
BarI	GAAGNNNNNNTAC	2 cut(s)	459, 491
BbvI	GCAGC	2 cut(s)	142, 280
BceAI	ACGGC	1 cut(s)	131
BfaI	CTAG	1 cut(s)	377
BisI	GCNGC	3 cut(s)	90, 156, 269
BlsI	GCNGC	3 cut(s)	91, 157, 270
BmcAI	AGTACT	1 cut(s)	431
Bme18I	GGWCC	1 cut(s)	142
BmgT120I	GGNCC	1 cut(s)	142
BmiI	GGNNCC	2 cut(s)	419, 543
BmsI	GCATC	1 cut(s)	439
BplI	GAGNNNNNCTC	2 cut(s)	164, 196
BpmI	CTGGAG	1 cut(s)	231
BsaJI	CCNNGG	1 cut(s)	460
BsaWI	WCCGGW	1 cut(s)	34
Bsc4I	CCNNNNNNNGG	2 cut(s)	493, 538
Bse1I	ACTGG	2 cut(s)	415, 507
Bse3DI	GCAATG	1 cut(s)	409
BseAI	TCCGGA	1 cut(s)	34
BseDI	CCNNGG	1 cut(s)	460
BseGI	GGATG	1 cut(s)	454
BseLI	CCNNNNNNNGG	2 cut(s)	493, 538
BseMI	GCAATG	1 cut(s)	409
BseNI	ACTGG	2 cut(s)	415, 507
BseXI	GCAGC	2 cut(s)	142, 280
BseYI	CCCAGC	1 cut(s)	22
Bsh1236I	CGCG	1 cut(s)	462
BsiSI	CCGG	1 cut(s)	35
BslI	CCNNNNNNNGG	2 cut(s)	493, 538
BsmI	GAATGC	2 cut(s)	30, 371
Bsp13I	TCCGGA	1 cut(s)	34
Bsp143I	GATC	1 cut(s)	541
BspACI	CCGC	3 cut(s)	89, 460, 462
BspEI	TCCGGA	1 cut(s)	34
BspFNI	CGCG	1 cut(s)	462
BspLI	GGNNCC	2 cut(s)	419, 543
BspPI	GGATC	2 cut(s)	536, 549
BsrDI	GCAATG	1 cut(s)	409
BsrI	ACTGG	2 cut(s)	415, 507
BssECI	CCNNGG	1 cut(s)	460
BssMI	GATC	1 cut(s)	541
Bst4CI	ACNGT	2 cut(s)	151, 199
Bst6I	CTCTTC	2 cut(s)	165, 390
BstC8I	GCNNGC	2 cut(s)	28, 416
BstDSI	CCRYGG	1 cut(s)	460
BstF5I	GGATG	1 cut(s)	454
BstFNI	CGCG	1 cut(s)	462
BstKTI	GATC	1 cut(s)	544
BstMBI	GATC	1 cut(s)	541
BstMWI	GCNNNNNNNGC	1 cut(s)	95
BstUI	CGCG	1 cut(s)	462
BstV1I	GCAGC	2 cut(s)	142, 280
BstX2I	RGATCY	1 cut(s)	541
BstYI	RGATCY	1 cut(s)	541
BtgI	CCRYGG	1 cut(s)	460
BtsCI	GGATG	1 cut(s)	454
BtsI	GCAGTG	1 cut(s)	78
BtsIMutI	CAGTG	2 cut(s)	78, 514
Cac8I	GCNNGC	2 cut(s)	28, 416
Cfr13I	GGNCC	1 cut(s)	142
Cfr42I	CCGCGG	1 cut(s)	463
Csp6I	GTAC	1 cut(s)	430
CviAII	CATG	1 cut(s)	482
CviJI	RGCY	7 cut(s)	26, 118, 176, 245, 334, 418, 470
CviKI_1	RGCY	7 cut(s)	26, 118, 176, 245, 334, 418, 470
CviQI	GTAC	1 cut(s)	430
DpnI	GATC	1 cut(s)	543
DpnII	GATC	1 cut(s)	541
DraI	TTTAAA	1 cut(s)	138
DraIII	CACNNNGTG	1 cut(s)	321
Eam1104I	CTCTTC	2 cut(s)	165, 390
EarI	CTCTTC	2 cut(s)	165, 390
Eco47I	GGWCC	1 cut(s)	142
EcoO109I	RGGNCCY	1 cut(s)	142
FaeI	CATG	1 cut(s)	485
FaiI	YATR	6 cut(s)	213, 232, 276, 299, 476, 483
FatI	CATG	1 cut(s)	481
FauI	CCCGC	1 cut(s)	467
FblI	GTMKAC	1 cut(s)	255
Fnu4HI	GCNGC	3 cut(s)	90, 156, 269
FokI	GGATG	1 cut(s)	461
Fsp4HI	GCNGC	3 cut(s)	90, 156, 269
FspBI	CTAG	1 cut(s)	377
GluI	GCNGC	3 cut(s)	90, 156, 269
GsaI	CCCAGC	1 cut(s)	26
GsuI	CTGGAG	1 cut(s)	231
HapII	CCGG	1 cut(s)	35
Hin1II	CATG	1 cut(s)	485
HincII	GTYRAC	1 cut(s)	310
HindII	GTYRAC	1 cut(s)	310
HpaII	CCGG	1 cut(s)	35
HphI	GGTGA	1 cut(s)	521
Hpy166II	GTNNAC	3 cut(s)	256, 310, 529
Hpy188III	TCNNGA	4 cut(s)	35, 111, 181, 248
Hpy8I	GTNNAC	3 cut(s)	256, 310, 529
HpyCH4III	ACNGT	2 cut(s)	151, 199
HpyCH4V	TGCA	3 cut(s)	158, 234, 371
HpyF10VI	GCNNNNNNNGC	1 cut(s)	95
Hsp92II	CATG	1 cut(s)	485
Kpn2I	TCCGGA	1 cut(s)	34
KspI	CCGCGG	1 cut(s)	463
Kzo9I	GATC	1 cut(s)	541
LmnI	GCTCC	3 cut(s)	250, 331, 423
Lsp1109I	GCAGC	2 cut(s)	142, 280
LweI	GCATC	1 cut(s)	439
MaeI	CTAG	1 cut(s)	377
MaeIII	GTNAC	2 cut(s)	406, 551
MalI	GATC	1 cut(s)	543
MboI	GATC	1 cut(s)	541
MboII	GAAGA	2 cut(s)	182, 407
MflI	RGATCY	1 cut(s)	541
MluCI	AATT	3 cut(s)	38, 239, 289
MnlI	CCTC	8 cut(s)	22, 166, 346, 379, 391, 464, 481, 489
MroI	TCCGGA	1 cut(s)	34
MseI	TTAA	1 cut(s)	137
MslI	CAYNNNNRTG	1 cut(s)	486
MspA1I	CMGCKG	2 cut(s)	26, 462
MspI	CCGG	1 cut(s)	35
Mva1269I	GAATGC	2 cut(s)	30, 371
MvnI	CGCG	1 cut(s)	462
MwoI	GCNNNNNNNGC	1 cut(s)	95
NdeII	GATC	1 cut(s)	541
NlaIII	CATG	1 cut(s)	485
NlaIV	GGNNCC	2 cut(s)	419, 543
NmuCI	GTSAC	1 cut(s)	551
PctI	GAATGC	2 cut(s)	30, 371
PflMI	CCANNNNNTGG	1 cut(s)	538
PkrI	GCNGC	3 cut(s)	91, 157, 270
PpuMI	RGGWCCY	1 cut(s)	142
Psp5II	RGGWCCY	1 cut(s)	142
PspFI	CCCAGC	1 cut(s)	22
PspN4I	GGNNCC	2 cut(s)	419, 543
PspPI	GGNCC	1 cut(s)	142
PspPPI	RGGWCCY	1 cut(s)	142
PsuI	RGATCY	1 cut(s)	541
PvuII	CAGCTG	1 cut(s)	26
RsaI	GTAC	1 cut(s)	431
RsaNI	GTAC	1 cut(s)	430
RseI	CAYNNNNRTG	1 cut(s)	486
SacII	CCGCGG	1 cut(s)	463
SaqAI	TTAA	1 cut(s)	137
SatI	GCNGC	3 cut(s)	90, 156, 269
Sau3AI	GATC	1 cut(s)	541
Sau96I	GGNCC	1 cut(s)	142
ScaI	AGTACT	1 cut(s)	431
SetI	ASST	8 cut(s)	28, 147, 166, 196, 247, 336, 481, 528
SfaNI	GCATC	1 cut(s)	439
Sfr303I	CCGCGG	1 cut(s)	463
SgrBI	CCGCGG	1 cut(s)	463
SinI	GGWCC	1 cut(s)	142
SmiMI	CAYNNNNRTG	1 cut(s)	486
Sse9I	AATT	3 cut(s)	38, 239, 289
SsiI	CCGC	3 cut(s)	89, 460, 462
SspI	AATATT	1 cut(s)	503
SspMI	CTAG	1 cut(s)	377
TaaI	ACNGT	2 cut(s)	151, 199
TaqI	TCGA	3 cut(s)	14, 120, 182
TasI	AATT	3 cut(s)	38, 239, 289
TatI	WGTACW	1 cut(s)	429
TauI	GCSGC	1 cut(s)	92
Tru1I	TTAA	1 cut(s)	137
Tru9I	TTAA	1 cut(s)	137
TscAI	CASTG	2 cut(s)	78, 514
TseFI	GTSAC	1 cut(s)	551
TseI	GCWGC	2 cut(s)	155, 268
Tsp45I	GTSAC	1 cut(s)	551
TspDTI	ATGAA	1 cut(s)	408
TspRI	CASTG	2 cut(s)	78, 514
Van91I	CCANNNNNTGG	1 cut(s)	538
VpaK11BI	GGWCC	1 cut(s)	142
XapI	RAATTY	2 cut(s)	38, 289
XmiI	GTMKAC	1 cut(s)	255
XspI	CTAG	1 cut(s)	377
ZrmI	AGTACT	1 cut(s)	431

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.