Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000002

Orthogroup ID

OG0010133

Physical Location & Seq

Genomic Coordinates Forward (+)

9654856 .. 9655707

Gene Structure 852 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug02G0113000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 852 bp

ATGGCTCAACCAGTGAGGTCTATTAGCTTGCCCTCTAGGCTAAACCCCATTTCCCAAAAGATTGAGTCAGAGTTAAACAAGCTAAGGACCTATAAATCTTCAAGTCCTCTAGGGAGTGAGTCTCTTTTAATCAGTTTGTCAGGTCTAGCAGAGCTGTTCAATTCCATTGAGGAACTGGTTCAATCTCAACTGACCCAACAAGCTCTTAGCCACCAGCAATGTAAATCACTAGTGGAAGAAACACTTGACGGGTCAGTTTGGTTGCTAGACTCATGTGGCAATGCAAGAGACTTGCTTTTGACGATGAAGCAACAGGTTCAAGACCTTCAATCCGCTTTACGTAGGAGGAATTCGAGCATTGATAGCAGTGTTCACGCTTACCTTTGCTTTAGAAAAAAGGCAAAGAAGAACGTCGCAAATAGCCTCAGAGAACTGAAGAAGATGGAGAGCAAATTTGGGTGTTTTTTGCATATGTTGGATGTAGACTACAATGTACTAATTGTGATCAAATTGTTAAGAGAATTAAGTGCTGTCACAATTTCTATGTTTCAGTCCCTATTTGTGTTTCTATCCATGCCAGTGACTACTAGATGGTCATTGGTATCAAAACTGAAGGCTGTGACATTTGCGACGGCCTCGGATAAAGACCAGAAGGTTTACAATGAAGTTGGAACTGTTGATGTTGCTCTCTGCTCACTACACAAGAGTGATGCCAAGACTGACGTGAAGATGGTGCAGTTGAGATTGGAAACACTAAATTGTAGCATAACTGGGCTTGAGGCTGGTTTGGAAAGACTGTTCAGATGCCTATTACAACATAGAGTGTCTCTACTCAATCTCGTAACACCATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004791 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006950 GO:0006979 GO:0008150 GO:0008152 GO:0009507 GO:0009534 GO:0009535 GO:0009536 GO:0009579 GO:0009636 GO:0009987 GO:0010190 GO:0015035 GO:0015036 GO:0016020 GO:0016043 GO:0016209 GO:0016491 GO:0016651 GO:0016667 GO:0016668 GO:0016671 GO:0017004 GO:0019725 GO:0022607 GO:0031976 GO:0031977 GO:0031984 GO:0033554 GO:0034357 GO:0034599 GO:0034622 GO:0042221 GO:0042592 GO:0042651 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043933 GO:0044085 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044436 GO:0044444 GO:0044446 GO:0044464 GO:0045454 GO:0047134 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0055035 GO:0055114 GO:0065003 GO:0065007 GO:0065008 GO:0070887 GO:0071840 GO:0097237 GO:0098754 GO:0098869 GO:1990748

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Thioredoxin

Protein Analysis

283

Amino Acids

31.72

Weight (kDa)

9.14

Isoelectric Point (pI)

52.68

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
BPS1	PF03087	46 - 279	1e-71	Protein BPS1

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0010133)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G37200
fragaria_vesca	FvH4_1g14520
malus_domestica	MD02G1158600.v1.1 MD15G1273400.v1.1 MD17G1248400.v1.1
prunus_persica	Prupe.7G145200_v2.0.a1
pyrus_communis	pycom02g12510 pycom15g23650 pycom17g24960 pycom17g25120
rosa_chinensis	RchiOBHm_Chr2g0103261
rosa_laevigata	RLG00000017219
rosa_multiflora	Rmu_sc0006743.1_g000012
rosa_roxburghii	Rroxscaffold_2G00139800
rosa_rugosa	Rorug02G0112900 Rorug02G0113000
rosa_samantha	Rh2AG161600 Rh2BG168500 Rh2CG168500 Rh2DG167400
rosa_wichuraiana	Rw2G012690

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	483
AciI	CCGC	1 cut(s)	333
AcsI	RAATTY	2 cut(s)	349, 452
AcuI	CTGAAG	2 cut(s)	455, 632
AfaI	GTAC	1 cut(s)	495
AgsI	TTSAA	5 cut(s)	102, 160, 182, 320, 329
AhlI	ACTAGT	1 cut(s)	229
AjiI	CACGTC	1 cut(s)	724
AleI	CACNNNNGTG	1 cut(s)	705
AloI	GAACNNNNNNTCC	2 cut(s)	782, 814
AluBI	AGCT	4 cut(s)	27, 82, 154, 203
AluI	AGCT	4 cut(s)	27, 82, 154, 203
Alw26I	GTCTC	3 cut(s)	126, 282, 831
AoxI	GGCC	1 cut(s)	633
ApoI	RAATTY	2 cut(s)	349, 452
Asp700I	GAANNNNTTC	1 cut(s)	177
AspS9I	GGNCC	1 cut(s)	87
AvaII	GGWCC	1 cut(s)	87
BccI	CCATC	3 cut(s)	436, 585, 724
BceAI	ACGGC	1 cut(s)	648
BclI	TGATCA	1 cut(s)	504
BcoDI	GTCTC	3 cut(s)	126, 282, 831
BcuI	ACTAGT	1 cut(s)	229
BfaI	CTAG	6 cut(s)	36, 110, 146, 230, 266, 588
BglI	GCCNNNNNGGC	1 cut(s)	37
Bme18I	GGWCC	1 cut(s)	87
BmgBI	CACGTC	1 cut(s)	724
BmgT120I	GGNCC	1 cut(s)	87
BmrI	ACTGGG	1 cut(s)	780
BmsI	GCATC	2 cut(s)	700, 794
BmuI	ACTGGG	1 cut(s)	780
BplI	GAGNNNNNCTC	2 cut(s)	106, 138
Bpu10I	CCTNAGC	1 cut(s)	83
BpuEI	CTTGAG	1 cut(s)	797
BsaAI	YACGTR	1 cut(s)	341
BsaJI	CCNNGG	1 cut(s)	636
Bse1I	ACTGG	4 cut(s)	11, 180, 578, 775
Bse3DI	GCAATG	2 cut(s)	224, 286
BseDI	CCNNGG	1 cut(s)	636
BseGI	GGATG	1 cut(s)	484
BseMI	GCAATG	2 cut(s)	224, 286
BseMII	CTCAG	1 cut(s)	439
BseNI	ACTGG	4 cut(s)	11, 180, 578, 775
BsgI	GTGCAG	1 cut(s)	755
BshFI	GGCC	1 cut(s)	635
BslFI	GGGAC	1 cut(s)	538
BsmAI	GTCTC	3 cut(s)	126, 282, 831
BsmFI	GGGAC	1 cut(s)	538
BsnI	GGCC	1 cut(s)	635
Bsp143I	GATC	1 cut(s)	504
BspACI	CCGC	1 cut(s)	333
BspANI	GGCC	1 cut(s)	635
BspCNI	CTCAG	1 cut(s)	438
BsrDI	GCAATG	2 cut(s)	224, 286
BsrI	ACTGG	4 cut(s)	11, 180, 578, 775
BssECI	CCNNGG	1 cut(s)	636
BssMI	GATC	1 cut(s)	504
Bst4CI	ACNGT	2 cut(s)	676, 798
BstBAI	YACGTR	1 cut(s)	341
BstC8I	GCNNGC	1 cut(s)	29
BstDEI	CTNAG	3 cut(s)	83, 206, 425
BstF5I	GGATG	1 cut(s)	484
BstKTI	GATC	1 cut(s)	507
BstMAI	GTCTC	3 cut(s)	126, 282, 831
BstMBI	GATC	1 cut(s)	504
BstMWI	GCNNNNNNNGC	2 cut(s)	37, 363
BstSNI	TACGTA	1 cut(s)	341
BsuRI	GGCC	1 cut(s)	635
BtrI	CACGTC	1 cut(s)	724
BtsCI	GGATG	1 cut(s)	484
BtsI	GCAGTG	1 cut(s)	373
BtsIMutI	CAGTG	3 cut(s)	18, 373, 585
Cac8I	GCNNGC	1 cut(s)	29
Cfr13I	GGNCC	1 cut(s)	87
Csp6I	GTAC	1 cut(s)	494
CviAII	CATG	2 cut(s)	273, 574
CviQI	GTAC	1 cut(s)	494
DdeI	CTNAG	3 cut(s)	83, 206, 425
DpnI	GATC	1 cut(s)	506
DpnII	GATC	1 cut(s)	504
Eco105I	TACGTA	1 cut(s)	341
Eco47I	GGWCC	1 cut(s)	87
Eco57I	CTGAAG	2 cut(s)	455, 632
EcoO109I	RGGNCCY	1 cut(s)	87
EcoRI	GAATTC	1 cut(s)	349
FaeI	CATG	2 cut(s)	276, 577
FaiI	YATR	9 cut(s)	93, 274, 471, 473, 545, 575, 767, 819, 850
FalI	AAGNNNNNCTT	2 cut(s)	228, 260
FaqI	GGGAC	1 cut(s)	538
FatI	CATG	2 cut(s)	272, 573
FauNDI	CATATG	1 cut(s)	471
FbaI	TGATCA	1 cut(s)	504
FblI	GTMKAC	1 cut(s)	483
FokI	GGATG	1 cut(s)	491
FspBI	CTAG	6 cut(s)	36, 110, 146, 230, 266, 588
HaeIII	GGCC	1 cut(s)	635
Hin1II	CATG	2 cut(s)	276, 577
HinfI	GANTC	3 cut(s)	65, 119, 269
Hpy166II	GTNNAC	3 cut(s)	373, 484, 658
Hpy188I	TCNGA	4 cut(s)	70, 428, 640, 803
Hpy188III	TCNNGA	1 cut(s)	320
Hpy8I	GTNNAC	3 cut(s)	373, 484, 658
Hpy99I	CGWCG	2 cut(s)	416, 634
HpyAV	CCTTC	3 cut(s)	335, 607, 646
HpyCH4III	ACNGT	2 cut(s)	676, 798
HpyCH4IV	ACGT	3 cut(s)	340, 411, 723
HpyCH4V	TGCA	3 cut(s)	284, 469, 736
HpyF10VI	GCNNNNNNNGC	2 cut(s)	37, 363
HpyF3I	CTNAG	3 cut(s)	83, 206, 425
HpySE526I	ACGT	3 cut(s)	340, 411, 723
Hsp92II	CATG	2 cut(s)	276, 577
Ksp22I	TGATCA	1 cut(s)	504
Kzo9I	GATC	1 cut(s)	504
LpnPI	CCDG	9 cut(s)	24, 126, 161, 227, 299, 591, 662, 756, 768
LweI	GCATC	2 cut(s)	700, 794
MaeI	CTAG	6 cut(s)	36, 110, 146, 230, 266, 588
MaeII	ACGT	3 cut(s)	340, 411, 723
MaeIII	GTNAC	4 cut(s)	532, 580, 619, 841
MalI	GATC	1 cut(s)	506
MboI	GATC	1 cut(s)	504
MboII	GAAGA	6 cut(s)	90, 248, 418, 448, 451, 739
MluCI	AATT	8 cut(s)	160, 349, 452, 498, 509, 521, 537, 757
MlyI	GAGTC	3 cut(s)	74, 128, 263
MmeI	TCCRAC	2 cut(s)	456, 649
MnlI	CCTC	8 cut(s)	9, 43, 117, 163, 339, 434, 646, 772
MroXI	GAANNNNTTC	1 cut(s)	177
MseI	TTAA	4 cut(s)	74, 128, 515, 524
MslI	CAYNNNNRTG	2 cut(s)	578, 705
MwoI	GCNNNNNNNGC	2 cut(s)	37, 363
NdeI	CATATG	1 cut(s)	471
NdeII	GATC	1 cut(s)	504
NlaIII	CATG	2 cut(s)	276, 577
NmuCI	GTSAC	3 cut(s)	532, 580, 619
OliI	CACNNNNGTG	1 cut(s)	705
PdmI	GAANNNNTTC	1 cut(s)	177
PleI	GAGTC	3 cut(s)	73, 127, 263
PpsI	GAGTC	3 cut(s)	73, 127, 263
Ppu21I	YACGTR	1 cut(s)	341
PpuMI	RGGWCCY	1 cut(s)	87
Psp5II	RGGWCCY	1 cut(s)	87
PspPI	GGNCC	1 cut(s)	87
PspPPI	RGGWCCY	1 cut(s)	87
RsaI	GTAC	1 cut(s)	495
RsaNI	GTAC	1 cut(s)	494
RseI	CAYNNNNRTG	2 cut(s)	578, 705
SaqAI	TTAA	4 cut(s)	74, 128, 515, 524
Sau3AI	GATC	1 cut(s)	504
Sau96I	GGNCC	1 cut(s)	87
SchI	GAGTC	3 cut(s)	74, 128, 263
SfaNI	GCATC	2 cut(s)	700, 794
SinI	GGWCC	1 cut(s)	87
SmiMI	CAYNNNNRTG	2 cut(s)	578, 705
SmlI	CTYRAG	1 cut(s)	776
SmoI	CTYRAG	1 cut(s)	776
SnaBI	TACGTA	1 cut(s)	341
SpeI	ACTAGT	1 cut(s)	229
Sse9I	AATT	8 cut(s)	160, 349, 452, 498, 509, 521, 537, 757
SsiI	CCGC	1 cut(s)	333
SspMI	CTAG	6 cut(s)	36, 110, 146, 230, 266, 588
TaaI	ACNGT	2 cut(s)	676, 798
TaiI	ACGT	3 cut(s)	343, 414, 726
TaqI	TCGA	1 cut(s)	353
TasI	AATT	8 cut(s)	160, 349, 452, 498, 509, 521, 537, 757
TatI	WGTACW	1 cut(s)	493
Tru1I	TTAA	4 cut(s)	74, 128, 515, 524
Tru9I	TTAA	4 cut(s)	74, 128, 515, 524
TscAI	CASTG	3 cut(s)	18, 373, 585
TseFI	GTSAC	3 cut(s)	532, 580, 619
Tsp45I	GTSAC	3 cut(s)	532, 580, 619
TspDTI	ATGAA	2 cut(s)	320, 678
TspRI	CASTG	3 cut(s)	18, 373, 585
VpaK11BI	GGWCC	1 cut(s)	87
XapI	RAATTY	2 cut(s)	349, 452
XcmI	CCANNNNNNNNNTGG	1 cut(s)	172
XmiI	GTMKAC	1 cut(s)	483
XmnI	GAANNNNTTC	1 cut(s)	177
XspI	CTAG	6 cut(s)	36, 110, 146, 230, 266, 588

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.