Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr17

Orthogroup ID

OG0010133

Physical Location & Seq

Genomic Coordinates Forward (+)

29724359 .. 29726912

Gene Structure 2554 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD17G1248400.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 606 bp

ATGGTCCAATTTAGTCGGGCTGAAGCTCTCTCCTTCCTCTCCAGACCCATTCTGGGTCTCCAGACGCTCTCTCTTCCTTTCCAGACGCACTTTTGCTCTCTCAGTGGGAGTGTGGAGGTTCACTTACACTTACCTAAACAAAACTTTGTCTCTGGCGTAGCTCCCGTTTCACTCGGCTCTCTTGCAGCCGCAACGCAACCCTACGGACAACTGGTTGTGGCTCTTTCGAATGGGAAGCCTACTGTTGTCGAGTTCTATGCTGATTGGTGTGAATTATGCAAGGAATTAGCTCCAGATGTCGGTAAAGTTGAGCAGCAGTACAAGGATCGTGTAAATTTTGTTATGCTGAATGTTGACAACACAAAGTGGGAACAAGAGCTTGATGAGTTTGGTGTTGAGGGTATTCCACACTTTGCATTCCTAGATAAAGCGGGAAATGAAGAGGGCAACGTAGTAGGCAGGCTTCCAGAAAAGTACCTGCTTGAGAATGTGGATGCTCTTGCCCGTGGAGAAGCCTCCATACCTCATGCTCATGTAGTGGGGCAGTTTTCAAGTGCTGAAGCCAGAAAGGTTCACCAAGTTCCTGATCCAAGAAGTCACGGATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004791 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006950 GO:0006979 GO:0008150 GO:0008152 GO:0009507 GO:0009534 GO:0009535 GO:0009536 GO:0009579 GO:0009636 GO:0009987 GO:0010190 GO:0015035 GO:0015036 GO:0016020 GO:0016043 GO:0016209 GO:0016491 GO:0016651 GO:0016667 GO:0016668 GO:0016671 GO:0017004 GO:0019725 GO:0022607 GO:0031976 GO:0031977 GO:0031984 GO:0033554 GO:0034357 GO:0034599 GO:0034622 GO:0042221 GO:0042592 GO:0042651 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043933 GO:0044085 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044436 GO:0044444 GO:0044446 GO:0044464 GO:0045454 GO:0047134 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0055035 GO:0055114 GO:0065003 GO:0065007 GO:0065008 GO:0070887 GO:0071840 GO:0097237 GO:0098754 GO:0098869 GO:1990748

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Thioredoxin

Protein Analysis

202

Amino Acids

22.04

Weight (kDa)

5.44

Isoelectric Point (pI)

21.01

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Thioredoxin_7	PF13899	73 - 142	4e-09	Thioredoxin-like
Thioredoxin_2	PF13098	75 - 160	2.7e-09	Thioredoxin-like domain
Thioredoxin	PF00085	77 - 165	1.8e-19	Thioredoxin
Redoxin	PF08534	77 - 142	8.6e-06	Redoxin
Thioredoxin_8	PF13905	78 - 130	1.3e-06	Thioredoxin-like

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

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Orthologous Genes (Group: OG0010133)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G37200
fragaria_vesca	FvH4_1g14520
malus_domestica	MD02G1158600.v1.1 MD15G1273400.v1.1 MD17G1248400.v1.1
prunus_persica	Prupe.7G145200_v2.0.a1
pyrus_communis	pycom02g12510 pycom15g23650 pycom17g24960 pycom17g25120
rosa_chinensis	RchiOBHm_Chr2g0103261
rosa_laevigata	RLG00000017219
rosa_multiflora	Rmu_sc0006743.1_g000012
rosa_roxburghii	Rroxscaffold_2G00139800
rosa_rugosa	Rorug02G0112900 Rorug02G0113000
rosa_samantha	Rh2AG161600 Rh2BG168500 Rh2CG168500 Rh2DG167400
rosa_wichuraiana	Rw2G012690

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	486
AciI	CCGC	2 cut(s)	189, 431
AclWI	GGATC	2 cut(s)	333, 581
AcsI	RAATTY	1 cut(s)	334
AcuI	CTGAAG	2 cut(s)	42, 579
AdeI	CACNNNGTG	1 cut(s)	366
AfaI	GTAC	2 cut(s)	320, 476
AfiI	CCNNNNNNNGG	2 cut(s)	53, 299
AgsI	TTSAA	1 cut(s)	552
AluBI	AGCT	4 cut(s)	26, 161, 290, 379
AluI	AGCT	4 cut(s)	26, 161, 290, 379
Alw26I	GTCTC	2 cut(s)	62, 154
AlwI	GGATC	2 cut(s)	333, 581
ApeKI	GCWGC	2 cut(s)	185, 313
ApoI	RAATTY	1 cut(s)	334
AspS9I	GGNCC	1 cut(s)	4
AsuHPI	GGTGA	1 cut(s)	566
AsuII	TTCGAA	1 cut(s)	227
AvaII	GGWCC	1 cut(s)	4
BarI	GAAGNNNNNNTAC	4 cut(s)	447, 479, 504, 536
BbvI	GCAGC	2 cut(s)	197, 325
BcgI	CGANNNNNNTGC	2 cut(s)	239, 273
BcoDI	GTCTC	2 cut(s)	62, 154
BfaI	CTAG	1 cut(s)	422
BfuAI	ACCTGC	1 cut(s)	486
BisI	GCNGC	3 cut(s)	186, 189, 314
BlsI	GCNGC	3 cut(s)	187, 190, 315
Bme18I	GGWCC	1 cut(s)	4
BmgT120I	GGNCC	1 cut(s)	4
BmsI	GCATC	1 cut(s)	484
BpmI	CTGGAG	3 cut(s)	25, 44, 276
Bpu14I	TTCGAA	1 cut(s)	227
BpuEI	CTTGAG	1 cut(s)	503
BsaI	GGTCTC	1 cut(s)	62
BsaJI	CCNNGG	1 cut(s)	505
Bsc4I	CCNNNNNNNGG	2 cut(s)	53, 299
Bse1I	ACTGG	1 cut(s)	216
BseDI	CCNNGG	1 cut(s)	505
BseGI	GGATG	1 cut(s)	499
BseLI	CCNNNNNNNGG	2 cut(s)	53, 299
BseMII	CTCAG	1 cut(s)	115
BseNI	ACTGG	1 cut(s)	216
BseXI	GCAGC	2 cut(s)	197, 325
BslI	CCNNNNNNNGG	2 cut(s)	53, 299
BsmAI	GTCTC	2 cut(s)	62, 154
BsmI	GAATGC	1 cut(s)	416
Bso31I	GGTCTC	1 cut(s)	62
Bsp119I	TTCGAA	1 cut(s)	227
Bsp143I	GATC	2 cut(s)	325, 586
BspACI	CCGC	2 cut(s)	189, 431
BspCNI	CTCAG	1 cut(s)	114
BspMI	ACCTGC	1 cut(s)	486
BspPI	GGATC	2 cut(s)	333, 581
BspT104I	TTCGAA	1 cut(s)	227
BspTNI	GGTCTC	1 cut(s)	62
BsrI	ACTGG	1 cut(s)	216
BssECI	CCNNGG	1 cut(s)	505
BssMI	GATC	2 cut(s)	325, 586
Bst4CI	ACNGT	1 cut(s)	244
Bst6I	CTCTTC	2 cut(s)	78, 435
BstBI	TTCGAA	1 cut(s)	227
BstC8I	GCNNGC	1 cut(s)	461
BstDEI	CTNAG	1 cut(s)	101
BstDSI	CCRYGG	1 cut(s)	505
BstF5I	GGATG	1 cut(s)	499
BstKTI	GATC	2 cut(s)	328, 589
BstMAI	GTCTC	2 cut(s)	62, 154
BstMBI	GATC	2 cut(s)	325, 586
BstV1I	GCAGC	2 cut(s)	197, 325
BtgI	CCRYGG	1 cut(s)	505
BtsCI	GGATG	1 cut(s)	499
BtsIMutI	CAGTG	1 cut(s)	109
BveI	ACCTGC	1 cut(s)	486
Cac8I	GCNNGC	1 cut(s)	461
Cfr13I	GGNCC	1 cut(s)	4
CseI	GACGC	2 cut(s)	73, 94
Csp6I	GTAC	2 cut(s)	319, 475
CviAII	CATG	2 cut(s)	527, 533
CviQI	GTAC	2 cut(s)	319, 475
DdeI	CTNAG	1 cut(s)	101
DpnI	GATC	2 cut(s)	327, 588
DpnII	GATC	2 cut(s)	325, 586
DraIII	CACNNNGTG	1 cut(s)	366
Eam1104I	CTCTTC	2 cut(s)	78, 435
EarI	CTCTTC	2 cut(s)	78, 435
Eco31I	GGTCTC	1 cut(s)	62
Eco47I	GGWCC	1 cut(s)	4
Eco57I	CTGAAG	2 cut(s)	42, 579
FaeI	CATG	2 cut(s)	530, 536
FaiI	YATR	6 cut(s)	258, 277, 344, 521, 528, 534
FatI	CATG	2 cut(s)	526, 532
FauI	CCCGC	1 cut(s)	424
Fnu4HI	GCNGC	3 cut(s)	186, 189, 314
FokI	GGATG	1 cut(s)	506
Fsp4HI	GCNGC	3 cut(s)	186, 189, 314
FspBI	CTAG	1 cut(s)	422
GluI	GCNGC	3 cut(s)	186, 189, 314
GsuI	CTGGAG	3 cut(s)	25, 44, 276
HgaI	GACGC	2 cut(s)	73, 94
Hin1II	CATG	2 cut(s)	530, 536
HincII	GTYRAC	1 cut(s)	355
HindII	GTYRAC	1 cut(s)	355
HphI	GGTGA	1 cut(s)	566
Hpy166II	GTNNAC	3 cut(s)	121, 355, 574
Hpy188III	TCNNGA	6 cut(s)	42, 61, 82, 293, 467, 584
Hpy8I	GTNNAC	3 cut(s)	121, 355, 574
HpyAV	CCTTC	1 cut(s)	43
HpyCH4III	ACNGT	1 cut(s)	244
HpyCH4IV	ACGT	1 cut(s)	450
HpyCH4V	TGCA	3 cut(s)	185, 279, 416
HpyF3I	CTNAG	1 cut(s)	101
HpySE526I	ACGT	1 cut(s)	450
Hsp92II	CATG	2 cut(s)	530, 536
Kzo9I	GATC	2 cut(s)	325, 586
LmnI	GCTCC	2 cut(s)	166, 295
Lsp1109I	GCAGC	2 cut(s)	197, 325
LweI	GCATC	1 cut(s)	484
MaeI	CTAG	1 cut(s)	422
MaeII	ACGT	1 cut(s)	450
MaeIII	GTNAC	1 cut(s)	596
MalI	GATC	2 cut(s)	327, 588
MboI	GATC	2 cut(s)	325, 586
MboII	GAAGA	2 cut(s)	65, 452
MluCI	AATT	4 cut(s)	8, 272, 284, 334
MnlI	CCTC	6 cut(s)	47, 109, 391, 436, 526, 534
MslI	CAYNNNNRTG	1 cut(s)	531
Mva1269I	GAATGC	1 cut(s)	416
NdeII	GATC	2 cut(s)	325, 586
NlaIII	CATG	2 cut(s)	530, 536
NmeAIII	GCCGAG	1 cut(s)	153
NmuCI	GTSAC	1 cut(s)	596
NspV	TTCGAA	1 cut(s)	227
PctI	GAATGC	1 cut(s)	416
PkrI	GCNGC	3 cut(s)	187, 190, 315
PspPI	GGNCC	1 cut(s)	4
RsaI	GTAC	2 cut(s)	320, 476
RsaNI	GTAC	2 cut(s)	319, 475
RseI	CAYNNNNRTG	1 cut(s)	531
SatI	GCNGC	3 cut(s)	186, 189, 314
Sau3AI	GATC	2 cut(s)	325, 586
Sau96I	GGNCC	1 cut(s)	4
SfaNI	GCATC	1 cut(s)	484
SfuI	TTCGAA	1 cut(s)	227
SinI	GGWCC	1 cut(s)	4
SmiMI	CAYNNNNRTG	1 cut(s)	531
SmlI	CTYRAG	1 cut(s)	482
SmoI	CTYRAG	1 cut(s)	482
Sse9I	AATT	4 cut(s)	8, 272, 284, 334
SsiI	CCGC	2 cut(s)	189, 431
SspMI	CTAG	1 cut(s)	422
TaaI	ACNGT	1 cut(s)	244
TaiI	ACGT	1 cut(s)	453
TaqI	TCGA	2 cut(s)	227, 249
TasI	AATT	4 cut(s)	8, 272, 284, 334
TatI	WGTACW	1 cut(s)	318
TauI	GCSGC	1 cut(s)	191
TscAI	CASTG	1 cut(s)	109
TseFI	GTSAC	1 cut(s)	596
TseI	GCWGC	2 cut(s)	185, 313
Tsp45I	GTSAC	1 cut(s)	596
TspDTI	ATGAA	1 cut(s)	453
TspGWI	ACGGA	1 cut(s)	219
TspRI	CASTG	1 cut(s)	109
VpaK11BI	GGWCC	1 cut(s)	4
XapI	RAATTY	1 cut(s)	334
XcmI	CCANNNNNNNNNTGG	1 cut(s)	49
XspI	CTAG	1 cut(s)	422

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.