Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2C

Orthogroup ID

OG0010133

Physical Location & Seq

Genomic Coordinates Forward (+)

15064384 .. 15066561

Gene Structure 2178 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2CG168500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 789 bp

ATGGCTCGCTTGGCTTCAAACCCCGTCGGACTCCATAGATTCCGGCCGTGCTTCCGAACTGCTCAACTTCCCCAACAACTCAGAGCCTCCATTCCCTCCCGAACCAACGACCACCGCAGATTTCAGACCGTTGCTTGCCAGAAAACCCCAAATCCCAGTGAGCCTTCCACCTCGGAAAAGTCGCCGCCTGTTGAGCCAGTTTCTGGTAATGAAGTGAGTAGCACGGTTATGAGTAGTTCCTCGACAGACCCAGCTGGCATTCCGGAATTTCCAAACAAAAATACCAACAGGCAAGTAGCAGTGGTTTCTACTCTTGCGGCATTAGCACTTTTCTTATCAGGACGGCTCGATTTTGGTGTTTCTTTAAAGGACCTAACTGTTGCTGCATTACCTTACGAAGAGGCTCTCTCGAATGGCAAGCCGACTGTTGTTGAGTTCTATGCTGATTGGTGTGAAGTATGCAGGGAATTAGCTCCAGATGTCTACAAAGTTGAGCAGCAGTATAAGGGTCGTGTAAATTTTGTTATGCTCAATGTTGACAACACAAAGTGGGAACAGGAGCTTGATGAGTTTGGTGTTGAGGGTATTCCACACTTTGCATTCCTAGATAAAGAGGGAAATGAAGAGGGCAATGTTACTGGCAGGCTCCCAGAAAAGTACTTGCGTGAGAATGTGGATGCCCTCTCCCGCGGAGAAGCCTCCATACCTCATGCCCGTGTAGTGGGGAAATATTCCAGTGCTGAAAACAGAAAGGTTCACCAAGTTGTGGATCCAAGAAGTCACGGATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004791 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006950 GO:0006979 GO:0008150 GO:0008152 GO:0009507 GO:0009534 GO:0009535 GO:0009536 GO:0009579 GO:0009636 GO:0009987 GO:0010190 GO:0015035 GO:0015036 GO:0016020 GO:0016043 GO:0016209 GO:0016491 GO:0016651 GO:0016667 GO:0016668 GO:0016671 GO:0017004 GO:0019725 GO:0022607 GO:0031976 GO:0031977 GO:0031984 GO:0033554 GO:0034357 GO:0034599 GO:0034622 GO:0042221 GO:0042592 GO:0042651 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043933 GO:0044085 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044436 GO:0044444 GO:0044446 GO:0044464 GO:0045454 GO:0047134 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0055035 GO:0055114 GO:0065003 GO:0065007 GO:0065008 GO:0070887 GO:0071840 GO:0097237 GO:0098754 GO:0098869 GO:1990748

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Thioredoxin

Protein Analysis

262

Amino Acids

29.0

Weight (kDa)

6.11

Isoelectric Point (pI)

35.79

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Thioredoxin	PF00085	131 - 226	7.9e-20	Thioredoxin
Thioredoxin_7	PF13899	132 - 203	6.7e-10	Thioredoxin-like
Thioredoxin_2	PF13098	137 - 221	2.1e-09	Thioredoxin-like domain
Thioredoxin_8	PF13905	139 - 200	2.3e-06	Thioredoxin-like

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0010133)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G37200
fragaria_vesca	FvH4_1g14520
malus_domestica	MD02G1158600.v1.1 MD15G1273400.v1.1 MD17G1248400.v1.1
prunus_persica	Prupe.7G145200_v2.0.a1
pyrus_communis	pycom02g12510 pycom15g23650 pycom17g24960 pycom17g25120
rosa_chinensis	RchiOBHm_Chr2g0103261
rosa_laevigata	RLG00000017219
rosa_multiflora	Rmu_sc0006743.1_g000012
rosa_roxburghii	Rroxscaffold_2G00139800
rosa_rugosa	Rorug02G0112900 Rorug02G0113000
rosa_samantha	Rh2AG161600 Rh2BG168500 Rh2CG168500 Rh2DG167400
rosa_wichuraiana	Rw2G012690

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	2 cut(s)	203, 766
AccI	GTMKAC	1 cut(s)	483
AccII	CGCG	1 cut(s)	690
AccIII	TCCGGA	1 cut(s)	262
AciI	CCGC	5 cut(s)	115, 185, 317, 688, 690
AclWI	GGATC	2 cut(s)	764, 777
AcoI	YGGCCR	1 cut(s)	44
AcsI	RAATTY	2 cut(s)	266, 517
AdeI	CACNNNGTG	1 cut(s)	549
AfaI	GTAC	1 cut(s)	659
AfiI	CCNNNNNNNGG	3 cut(s)	203, 721, 766
AgsI	TTSAA	1 cut(s)	18
AluBI	AGCT	3 cut(s)	254, 473, 562
AluI	AGCT	3 cut(s)	254, 473, 562
AlwI	GGATC	2 cut(s)	764, 777
AlwNI	CAGNNNCTG	1 cut(s)	203
Aor13HI	TCCGGA	1 cut(s)	262
AoxI	GGCC	1 cut(s)	44
ApeKI	GCWGC	2 cut(s)	383, 496
ApoI	RAATTY	2 cut(s)	266, 517
AspS9I	GGNCC	1 cut(s)	370
AsuHPI	GGTGA	1 cut(s)	749
AvaII	GGWCC	1 cut(s)	370
BamHI	GGATCC	1 cut(s)	769
BarI	GAAGNNNNNNTAC	2 cut(s)	687, 719
BbvI	GCAGC	2 cut(s)	370, 508
BceAI	ACGGC	2 cut(s)	31, 359
BfaI	CTAG	1 cut(s)	605
BisI	GCNGC	4 cut(s)	185, 318, 384, 497
BlsI	GCNGC	4 cut(s)	186, 319, 385, 498
BmcAI	AGTACT	1 cut(s)	659
Bme18I	GGWCC	1 cut(s)	370
BmgT120I	GGNCC	1 cut(s)	370
BmiI	GGNNCC	2 cut(s)	647, 771
BmrI	ACTGGG	1 cut(s)	150
BmsI	GCATC	1 cut(s)	667
BmuI	ACTGGG	1 cut(s)	150
BplI	GAGNNNNNCTC	2 cut(s)	392, 424
BpmI	CTGGAG	1 cut(s)	459
BsaJI	CCNNGG	2 cut(s)	171, 688
BsaWI	WCCGGW	1 cut(s)	262
Bsc4I	CCNNNNNNNGG	3 cut(s)	203, 721, 766
Bse1I	ACTGG	4 cut(s)	156, 197, 643, 735
Bse3DI	GCAATG	1 cut(s)	637
BseAI	TCCGGA	1 cut(s)	262
BseDI	CCNNGG	2 cut(s)	171, 688
BseGI	GGATG	1 cut(s)	682
BseLI	CCNNNNNNNGG	3 cut(s)	203, 721, 766
BseMI	GCAATG	1 cut(s)	637
BseMII	CTCAG	1 cut(s)	94
BseNI	ACTGG	4 cut(s)	156, 197, 643, 735
BseX3I	CGGCCG	1 cut(s)	44
BseXI	GCAGC	2 cut(s)	370, 508
BseYI	CCCAGC	1 cut(s)	250
Bsh1236I	CGCG	1 cut(s)	690
Bsh1285I	CGRYCG	1 cut(s)	47
BshFI	GGCC	1 cut(s)	46
BsiEI	CGRYCG	1 cut(s)	47
BsiSI	CCGG	2 cut(s)	43, 263
BslI	CCNNNNNNNGG	3 cut(s)	203, 721, 766
BsmI	GAATGC	2 cut(s)	258, 599
BsnI	GGCC	1 cut(s)	46
Bsp13I	TCCGGA	1 cut(s)	262
Bsp143I	GATC	1 cut(s)	769
BspACI	CCGC	5 cut(s)	115, 185, 317, 688, 690
BspANI	GGCC	1 cut(s)	46
BspCNI	CTCAG	1 cut(s)	93
BspEI	TCCGGA	1 cut(s)	262
BspFNI	CGCG	1 cut(s)	690
BspLI	GGNNCC	2 cut(s)	647, 771
BspPI	GGATC	2 cut(s)	764, 777
BsrDI	GCAATG	1 cut(s)	637
BsrI	ACTGG	4 cut(s)	156, 197, 643, 735
BssECI	CCNNGG	2 cut(s)	171, 688
BssMI	GATC	1 cut(s)	769
Bst4CI	ACNGT	4 cut(s)	130, 226, 379, 427
Bst6I	CTCTTC	2 cut(s)	393, 618
BstC8I	GCNNGC	5 cut(s)	7, 136, 256, 419, 644
BstDEI	CTNAG	1 cut(s)	80
BstDSI	CCRYGG	1 cut(s)	688
BstF5I	GGATG	1 cut(s)	682
BstFNI	CGCG	1 cut(s)	690
BstKTI	GATC	1 cut(s)	772
BstMBI	GATC	1 cut(s)	769
BstMCI	CGRYCG	1 cut(s)	47
BstMWI	GCNNNNNNNGC	3 cut(s)	11, 193, 323
BstUI	CGCG	1 cut(s)	690
BstV1I	GCAGC	2 cut(s)	370, 508
BstX2I	RGATCY	1 cut(s)	769
BstYI	RGATCY	1 cut(s)	769
BstZI	CGGCCG	1 cut(s)	44
BsuRI	GGCC	1 cut(s)	46
BtgI	CCRYGG	1 cut(s)	688
BtsCI	GGATG	1 cut(s)	682
BtsI	GCAGTG	1 cut(s)	306
BtsIMutI	CAGTG	3 cut(s)	163, 306, 742
Cac8I	GCNNGC	5 cut(s)	7, 136, 256, 419, 644
CaiI	CAGNNNCTG	1 cut(s)	203
Cfr13I	GGNCC	1 cut(s)	370
Cfr42I	CCGCGG	1 cut(s)	691
Csp6I	GTAC	1 cut(s)	658
CviAII	CATG	1 cut(s)	710
CviQI	GTAC	1 cut(s)	658
DdeI	CTNAG	1 cut(s)	80
DpnI	GATC	1 cut(s)	771
DpnII	GATC	1 cut(s)	769
DraI	TTTAAA	1 cut(s)	366
DraIII	CACNNNGTG	1 cut(s)	549
EaeI	YGGCCR	1 cut(s)	44
EagI	CGGCCG	1 cut(s)	44
Eam1104I	CTCTTC	2 cut(s)	393, 618
EarI	CTCTTC	2 cut(s)	393, 618
EclXI	CGGCCG	1 cut(s)	44
Eco47I	GGWCC	1 cut(s)	370
Eco52I	CGGCCG	1 cut(s)	44
EcoO109I	RGGNCCY	1 cut(s)	370
FaeI	CATG	1 cut(s)	713
FaiI	YATR	8 cut(s)	36, 230, 441, 460, 504, 527, 704, 711
FatI	CATG	1 cut(s)	709
FauI	CCCGC	1 cut(s)	695
FblI	GTMKAC	1 cut(s)	483
Fnu4HI	GCNGC	4 cut(s)	185, 318, 384, 497
FokI	GGATG	1 cut(s)	689
Fsp4HI	GCNGC	4 cut(s)	185, 318, 384, 497
FspBI	CTAG	1 cut(s)	605
GluI	GCNGC	4 cut(s)	185, 318, 384, 497
GsaI	CCCAGC	1 cut(s)	254
GsuI	CTGGAG	1 cut(s)	459
HaeIII	GGCC	1 cut(s)	46
HapII	CCGG	2 cut(s)	43, 263
Hin1II	CATG	1 cut(s)	713
HincII	GTYRAC	1 cut(s)	538
HindII	GTYRAC	1 cut(s)	538
HinfI	GANTC	2 cut(s)	30, 39
HpaII	CCGG	2 cut(s)	43, 263
HphI	GGTGA	1 cut(s)	749
Hpy166II	GTNNAC	3 cut(s)	484, 538, 757
Hpy188I	TCNGA	5 cut(s)	29, 56, 83, 126, 175
Hpy188III	TCNNGA	5 cut(s)	99, 263, 339, 409, 476
Hpy8I	GTNNAC	3 cut(s)	484, 538, 757
Hpy99I	CGWCG	1 cut(s)	29
HpyAV	CCTTC	1 cut(s)	174
HpyCH4III	ACNGT	4 cut(s)	130, 226, 379, 427
HpyCH4V	TGCA	3 cut(s)	386, 462, 599
HpyF10VI	GCNNNNNNNGC	3 cut(s)	11, 193, 323
HpyF3I	CTNAG	1 cut(s)	80
Hsp92II	CATG	1 cut(s)	713
Kpn2I	TCCGGA	1 cut(s)	262
KspI	CCGCGG	1 cut(s)	691
Kzo9I	GATC	1 cut(s)	769
LmnI	GCTCC	3 cut(s)	478, 559, 651
Lsp1109I	GCAGC	2 cut(s)	370, 508
LweI	GCATC	1 cut(s)	667
MaeI	CTAG	1 cut(s)	605
MaeIII	GTNAC	2 cut(s)	634, 779
MalI	GATC	1 cut(s)	771
MboI	GATC	1 cut(s)	769
MboII	GAAGA	2 cut(s)	410, 635
MflI	RGATCY	1 cut(s)	769
MluCI	AATT	3 cut(s)	266, 467, 517
MlyI	GAGTC	1 cut(s)	24
MmeI	TCCRAC	1 cut(s)	7
MroI	TCCGGA	1 cut(s)	262
MseI	TTAA	1 cut(s)	365
MslI	CAYNNNNRTG	2 cut(s)	227, 714
MspA1I	CMGCKG	2 cut(s)	254, 690
MspI	CCGG	2 cut(s)	43, 263
Mva1269I	GAATGC	2 cut(s)	258, 599
MvnI	CGCG	1 cut(s)	690
MwoI	GCNNNNNNNGC	3 cut(s)	11, 193, 323
NdeII	GATC	1 cut(s)	769
NlaIII	CATG	1 cut(s)	713
NlaIV	GGNNCC	2 cut(s)	647, 771
NmuCI	GTSAC	1 cut(s)	779
PctI	GAATGC	2 cut(s)	258, 599
PfeI	GAWTC	1 cut(s)	39
PflMI	CCANNNNNTGG	2 cut(s)	203, 766
PkrI	GCNGC	4 cut(s)	186, 319, 385, 498
PleI	GAGTC	1 cut(s)	24
PpsI	GAGTC	1 cut(s)	24
PpuMI	RGGWCCY	1 cut(s)	370
Psp5II	RGGWCCY	1 cut(s)	370
PspFI	CCCAGC	1 cut(s)	250
PspN4I	GGNNCC	2 cut(s)	647, 771
PspPI	GGNCC	1 cut(s)	370
PspPPI	RGGWCCY	1 cut(s)	370
PstNI	CAGNNNCTG	1 cut(s)	203
PsuI	RGATCY	1 cut(s)	769
PvuII	CAGCTG	1 cut(s)	254
RsaI	GTAC	1 cut(s)	659
RsaNI	GTAC	1 cut(s)	658
RseI	CAYNNNNRTG	2 cut(s)	227, 714
SacII	CCGCGG	1 cut(s)	691
SaqAI	TTAA	1 cut(s)	365
SatI	GCNGC	4 cut(s)	185, 318, 384, 497
Sau3AI	GATC	1 cut(s)	769
Sau96I	GGNCC	1 cut(s)	370
ScaI	AGTACT	1 cut(s)	659
SchI	GAGTC	1 cut(s)	24
SetI	ASST	8 cut(s)	173, 256, 375, 394, 475, 564, 709, 756
SfaNI	GCATC	1 cut(s)	667
Sfr303I	CCGCGG	1 cut(s)	691
SgrBI	CCGCGG	1 cut(s)	691
SinI	GGWCC	1 cut(s)	370
SmiMI	CAYNNNNRTG	2 cut(s)	227, 714
Sse9I	AATT	3 cut(s)	266, 467, 517
SsiI	CCGC	5 cut(s)	115, 185, 317, 688, 690
SspI	AATATT	1 cut(s)	731
SspMI	CTAG	1 cut(s)	605
TaaI	ACNGT	4 cut(s)	130, 226, 379, 427
TaqI	TCGA	3 cut(s)	242, 348, 410
TasI	AATT	3 cut(s)	266, 467, 517
TatI	WGTACW	1 cut(s)	657
TauI	GCSGC	2 cut(s)	187, 320
TfiI	GAWTC	1 cut(s)	39
Tru1I	TTAA	1 cut(s)	365
Tru9I	TTAA	1 cut(s)	365
TscAI	CASTG	3 cut(s)	163, 306, 742
TseFI	GTSAC	1 cut(s)	779
TseI	GCWGC	2 cut(s)	383, 496
Tsp45I	GTSAC	1 cut(s)	779
TspDTI	ATGAA	2 cut(s)	225, 636
TspRI	CASTG	3 cut(s)	163, 306, 742
Van91I	CCANNNNNTGG	2 cut(s)	203, 766
VpaK11BI	GGWCC	1 cut(s)	370
XapI	RAATTY	2 cut(s)	266, 517
XmiI	GTMKAC	1 cut(s)	483
XspI	CTAG	1 cut(s)	605
ZrmI	AGTACT	1 cut(s)	659

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.