Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr2

Orthogroup ID

OG0010133

Physical Location & Seq

Genomic Coordinates Forward (+)

9089177 .. 9090905

Gene Structure 1729 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom02g12510.4

Sequence Viewer

CDS Protein Promoter (2k)

Length: 822 bp

ATGGCGCCAAAATCCAATTCCTTTCACATTATCTGCAAATTACAAATGGCTCGCGTGGCTTCCAACCCAGTTGGCTTCCATAGATTCCGGCCATGTTTCCAAACTCCTCCACTTCCCCGCTACGTTAAACCCTCTATCCACTTCCCAAACCACCACCGCCAATTTCCGACCGTTTCTTGCCAGCAAACCCCCAATCCATCCGACCCCTCCACGACGGAGAAGTCAGTTGTTGAGCCAGGCTCTGGCAGTGATACCAGCAGTCAAGCTACGAGTTCCTCCACGAGCTCTGGCCCTCCGGAATTTCCAAACAAGAATACCAACAGGCAAGTAGCGGTGGTTTCCACTCTTGCAGCTCTGGCACTTTTCTTATCAGCAAGGCTCCATTTTGGTGTTTCTTTGAAGGACCTCTCCGTTGCGGCATTACCTTATGAAGAGGCTCTTTCAAATGGGAAGCCTACTGTTGTTGAGTTCTATGCCGATTGGTGTGAAGCATGCAGGGAATTAGCTCCAGATGTCTATAAAGTTGAGCAGAAGTATAAGGGTCGTGTAAATTTTGTTATGCTGAACGTAGACAACACAAAGTGGGAACAGGAGCTTGATGAGTTTGGTGTTGAGGGAATTCCACACTTTGCGTTCCTAGATAAAGCGGGAAACGAAGAGGGTAACGTAGTAGGCAGGCTTCCAGAGAAGTACCTGCTTGAAAATGTGGACGCTCTTGCCCGTGGAGAAGCTTCCATACCTCACGCTCGTGTAGTGGGGCAGTTTTCAAGTGCCGAAGCCAGAAAGGTTCACCAAGTTTCTGAACCAAGAAGTCACGGATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004791 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006950 GO:0006979 GO:0008150 GO:0008152 GO:0009507 GO:0009534 GO:0009535 GO:0009536 GO:0009579 GO:0009636 GO:0009987 GO:0010190 GO:0015035 GO:0015036 GO:0016020 GO:0016043 GO:0016209 GO:0016491 GO:0016651 GO:0016667 GO:0016668 GO:0016671 GO:0017004 GO:0019725 GO:0022607 GO:0031976 GO:0031977 GO:0031984 GO:0033554 GO:0034357 GO:0034599 GO:0034622 GO:0042221 GO:0042592 GO:0042651 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043933 GO:0044085 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044436 GO:0044444 GO:0044446 GO:0044464 GO:0045454 GO:0047134 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0055035 GO:0055114 GO:0065003 GO:0065007 GO:0065008 GO:0070887 GO:0071840 GO:0097237 GO:0098754 GO:0098869 GO:1990748

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Thioredoxin

Protein Analysis

274

Amino Acids

30.05

Weight (kDa)

6.8

Isoelectric Point (pI)

32.22

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0010133)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G37200
fragaria_vesca	FvH4_1g14520
malus_domestica	MD02G1158600.v1.1 MD15G1273400.v1.1 MD17G1248400.v1.1
prunus_persica	Prupe.7G145200_v2.0.a1
pyrus_communis	pycom02g12510 pycom15g23650 pycom17g24960 pycom17g25120
rosa_chinensis	RchiOBHm_Chr2g0103261
rosa_laevigata	RLG00000017219
rosa_multiflora	Rmu_sc0006743.1_g000012
rosa_roxburghii	Rroxscaffold_2G00139800
rosa_rugosa	Rorug02G0112900 Rorug02G0113000
rosa_samantha	Rh2AG161600 Rh2BG168500 Rh2CG168500 Rh2DG167400
rosa_wichuraiana	Rw2G012690

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	220
Acc36I	ACCTGC	1 cut(s)	702
AccB1I	GGYRCC	1 cut(s)	4
AccB7I	CCANNNNNTGG	1 cut(s)	242
AccI	GTMKAC	1 cut(s)	570
AccII	CGCG	1 cut(s)	54
AccIII	TCCGGA	1 cut(s)	295
AciI	CCGC	5 cut(s)	118, 157, 332, 416, 647
AcoI	YGGCCR	1 cut(s)	89
AcsI	RAATTY	3 cut(s)	299, 550, 618
AcyI	GRCGYC	1 cut(s)	5
AdeI	CACNNNGTG	1 cut(s)	582
AfaI	GTAC	1 cut(s)	692
AfiI	CCNNNNNNNGG	1 cut(s)	242
AgsI	TTSAA	4 cut(s)	400, 444, 701, 768
AjnI	CCWGG	1 cut(s)	235
AjuI	GAANNNNNNNTTGG	1 cut(s)	33
AleI	CACNNNNGTG	1 cut(s)	747
AluBI	AGCT	6 cut(s)	266, 285, 353, 506, 595, 731
AluI	AGCT	6 cut(s)	266, 285, 353, 506, 595, 731
Alw21I	GWGCWC	1 cut(s)	287
AlwNI	CAGNNNCTG	1 cut(s)	242
Aor13HI	TCCGGA	1 cut(s)	295
AoxI	GGCC	2 cut(s)	89, 289
ApeKI	GCWGC	1 cut(s)	350
ApoI	RAATTY	3 cut(s)	299, 550, 618
AspLEI	GCGC	1 cut(s)	7
AspS9I	GGNCC	2 cut(s)	290, 403
AsuHPI	GGTGA	1 cut(s)	782
AvaII	GGWCC	1 cut(s)	403
BanI	GGYRCC	1 cut(s)	4
BanII	GRGCYC	1 cut(s)	287
BarI	GAAGNNNNNNTAC	4 cut(s)	663, 695, 720, 752
BauI	CACGAG	2 cut(s)	280, 747
Bbv12I	GWGCWC	1 cut(s)	287
BbvI	GCAGC	1 cut(s)	362
BccI	CCATC	1 cut(s)	205
BciT130I	CCWGG	1 cut(s)	237
BfaI	CTAG	1 cut(s)	638
BfoI	RGCGCY	1 cut(s)	8
BfuAI	ACCTGC	1 cut(s)	702
BisI	GCNGC	2 cut(s)	351, 417
BlsI	GCNGC	2 cut(s)	352, 418
Bme1390I	CCNGG	1 cut(s)	237
Bme18I	GGWCC	1 cut(s)	403
BmgT120I	GGNCC	2 cut(s)	290, 403
BmiI	GGNNCC	2 cut(s)	6, 380
BmrFI	CCNGG	1 cut(s)	237
BmrI	ACTGGG	1 cut(s)	62
BmuI	ACTGGG	1 cut(s)	62
BplI	GAGNNNNNCTC	2 cut(s)	224, 256
BpmI	CTGGAG	1 cut(s)	492
BsaHI	GRCGYC	1 cut(s)	5
BsaJI	CCNNGG	1 cut(s)	721
BsaWI	WCCGGW	1 cut(s)	295
Bsc4I	CCNNNNNNNGG	1 cut(s)	242
Bse1I	ACTGG	1 cut(s)	68
BseAI	TCCGGA	1 cut(s)	295
BseBI	CCWGG	1 cut(s)	237
BseDI	CCNNGG	1 cut(s)	721
BseGI	GGATG	1 cut(s)	197
BseLI	CCNNNNNNNGG	1 cut(s)	242
BseNI	ACTGG	1 cut(s)	68
BseRI	GAGGAG	1 cut(s)	96
BseXI	GCAGC	1 cut(s)	362
Bsh1236I	CGCG	1 cut(s)	54
Bsh1285I	CGRYCG	1 cut(s)	171
BshFI	GGCC	2 cut(s)	91, 291
BshNI	GGYRCC	1 cut(s)	4
BsiEI	CGRYCG	1 cut(s)	171
BsiHKAI	GWGCWC	1 cut(s)	287
BsiSI	CCGG	2 cut(s)	88, 296
BslI	CCNNNNNNNGG	1 cut(s)	242
BsnI	GGCC	2 cut(s)	91, 291
Bsp1286I	GDGCHC	1 cut(s)	287
Bsp13I	TCCGGA	1 cut(s)	295
BspACI	CCGC	5 cut(s)	118, 157, 332, 416, 647
BspANI	GGCC	2 cut(s)	91, 291
BspEI	TCCGGA	1 cut(s)	295
BspFNI	CGCG	1 cut(s)	54
BspLI	GGNNCC	2 cut(s)	6, 380
BspMI	ACCTGC	1 cut(s)	702
BspT107I	GGYRCC	1 cut(s)	4
BsrI	ACTGG	1 cut(s)	68
BssECI	CCNNGG	1 cut(s)	721
BssNI	GRCGYC	1 cut(s)	5
BssSI	CACGAG	2 cut(s)	280, 747
Bst2BI	CACGAG	2 cut(s)	280, 747
Bst2UI	CCWGG	1 cut(s)	237
Bst4CI	ACNGT	2 cut(s)	172, 460
Bst6I	CTCTTC	2 cut(s)	426, 651
BstACI	GRCGYC	1 cut(s)	5
BstC8I	GCNNGC	4 cut(s)	52, 182, 493, 677
BstDSI	CCRYGG	1 cut(s)	721
BstF5I	GGATG	1 cut(s)	197
BstFNI	CGCG	1 cut(s)	54
BstH2I	RGCGCY	1 cut(s)	8
BstHHI	GCGC	1 cut(s)	7
BstMCI	CGRYCG	1 cut(s)	171
BstMWI	GCNNNNNNNGC	2 cut(s)	56, 356
BstNI	CCWGG	1 cut(s)	237
BstNSI	RCATGY	1 cut(s)	495
BstSCI	CCNGG	1 cut(s)	235
BstUI	CGCG	1 cut(s)	54
BstV1I	GCAGC	1 cut(s)	362
BsuRI	GGCC	2 cut(s)	91, 291
BtgI	CCRYGG	1 cut(s)	721
BtsCI	GGATG	1 cut(s)	197
BtsI	GCAGTG	1 cut(s)	253
BtsIMutI	CAGTG	1 cut(s)	253
BveI	ACCTGC	1 cut(s)	702
Cac8I	GCNNGC	4 cut(s)	52, 182, 493, 677
CaiI	CAGNNNCTG	1 cut(s)	242
CfoI	GCGC	1 cut(s)	7
Cfr13I	GGNCC	2 cut(s)	290, 403
CseI	GACGC	1 cut(s)	719
Csp6I	GTAC	1 cut(s)	691
CviAII	CATG	2 cut(s)	93, 492
CviQI	GTAC	1 cut(s)	691
DinI	GGCGCC	1 cut(s)	6
DraIII	CACNNNGTG	1 cut(s)	582
DrdI	GACNNNNNNGTC	1 cut(s)	220
DseDI	GACNNNNNNGTC	1 cut(s)	220
EaeI	YGGCCR	1 cut(s)	89
Eam1104I	CTCTTC	2 cut(s)	426, 651
EarI	CTCTTC	2 cut(s)	426, 651
Ecl136II	GAGCTC	1 cut(s)	285
Eco24I	GRGCYC	1 cut(s)	287
Eco47I	GGWCC	1 cut(s)	403
Eco53kI	GAGCTC	1 cut(s)	285
EcoICRI	GAGCTC	1 cut(s)	285
EcoO109I	RGGNCCY	1 cut(s)	403
EcoRI	GAATTC	1 cut(s)	618
EcoRII	CCWGG	1 cut(s)	235
EcoT38I	GRGCYC	1 cut(s)	287
EgeI	GGCGCC	1 cut(s)	6
EheI	GGCGCC	1 cut(s)	6
FaeI	CATG	2 cut(s)	96, 495
FaiI	YATR	9 cut(s)	81, 94, 429, 474, 493, 519, 537, 560, 737
FalI	AAGNNNNNCTT	2 cut(s)	423, 455
FatI	CATG	2 cut(s)	92, 491
FauI	CCCGC	2 cut(s)	125, 640
FblI	GTMKAC	1 cut(s)	570
Fnu4HI	GCNGC	2 cut(s)	351, 417
FokI	GGATG	1 cut(s)	184
FriOI	GRGCYC	1 cut(s)	287
Fsp4HI	GCNGC	2 cut(s)	351, 417
FspBI	CTAG	1 cut(s)	638
GlaI	GCGC	1 cut(s)	6
GluI	GCNGC	2 cut(s)	351, 417
GsuI	CTGGAG	1 cut(s)	492
HaeII	RGCGCY	1 cut(s)	8
HaeIII	GGCC	2 cut(s)	91, 291
HapII	CCGG	2 cut(s)	88, 296
HgaI	GACGC	1 cut(s)	719
HhaI	GCGC	1 cut(s)	7
Hin1I	GRCGYC	1 cut(s)	5
Hin1II	CATG	2 cut(s)	96, 495
Hin6I	GCGC	1 cut(s)	5
HinP1I	GCGC	1 cut(s)	5
HindIII	AAGCTT	1 cut(s)	729
HinfI	GANTC	1 cut(s)	84
HpaII	CCGG	2 cut(s)	88, 296
HphI	GGTGA	1 cut(s)	782
Hpy166II	GTNNAC	3 cut(s)	571, 709, 790
Hpy188I	TCNGA	3 cut(s)	168, 202, 802
Hpy188III	TCNNGA	3 cut(s)	296, 509, 683
Hpy8I	GTNNAC	3 cut(s)	571, 709, 790
Hpy99I	CGWCG	1 cut(s)	217
HpyAV	CCTTC	1 cut(s)	394
HpyCH4III	ACNGT	2 cut(s)	172, 460
HpyCH4IV	ACGT	3 cut(s)	123, 567, 666
HpyCH4V	TGCA	3 cut(s)	36, 350, 495
HpyF10VI	GCNNNNNNNGC	2 cut(s)	56, 356
HpySE526I	ACGT	3 cut(s)	123, 567, 666
Hsp92I	GRCGYC	1 cut(s)	5
Hsp92II	CATG	2 cut(s)	96, 495
HspAI	GCGC	1 cut(s)	5
KasI	GGCGCC	1 cut(s)	4
Kpn2I	TCCGGA	1 cut(s)	295
LmnI	GCTCC	3 cut(s)	384, 511, 592
Lsp1109I	GCAGC	1 cut(s)	362
MaeI	CTAG	1 cut(s)	638
MaeII	ACGT	3 cut(s)	123, 567, 666
MaeIII	GTNAC	2 cut(s)	662, 812
MboII	GAAGA	2 cut(s)	443, 668
MhlI	GDGCHC	1 cut(s)	287
MluCI	AATT	7 cut(s)	16, 38, 161, 299, 500, 550, 618
Mly113I	GGCGCC	1 cut(s)	5
MmeI	TCCRAC	3 cut(s)	87, 191, 225
MroI	TCCGGA	1 cut(s)	295
MseI	TTAA	1 cut(s)	126
MslI	CAYNNNNRTG	2 cut(s)	387, 747
MspI	CCGG	2 cut(s)	88, 296
MspR9I	CCNGG	1 cut(s)	237
MvaI	CCWGG	1 cut(s)	237
MvnI	CGCG	1 cut(s)	54
MwoI	GCNNNNNNNGC	2 cut(s)	56, 356
NarI	GGCGCC	1 cut(s)	5
NlaIII	CATG	2 cut(s)	96, 495
NlaIV	GGNNCC	2 cut(s)	6, 380
NmuCI	GTSAC	1 cut(s)	812
NspI	RCATGY	1 cut(s)	495
OliI	CACNNNNGTG	1 cut(s)	747
PaeI	GCATGC	1 cut(s)	495
PfeI	GAWTC	1 cut(s)	84
PflMI	CCANNNNNTGG	1 cut(s)	242
PkrI	GCNGC	2 cut(s)	352, 418
PluTI	GGCGCC	1 cut(s)	8
PpuMI	RGGWCCY	1 cut(s)	403
Psp124BI	GAGCTC	1 cut(s)	287
Psp5II	RGGWCCY	1 cut(s)	403
Psp6I	CCWGG	1 cut(s)	235
PspGI	CCWGG	1 cut(s)	235
PspN4I	GGNNCC	2 cut(s)	6, 380
PspPI	GGNCC	2 cut(s)	290, 403
PspPPI	RGGWCCY	1 cut(s)	403
PstNI	CAGNNNCTG	1 cut(s)	242
RsaI	GTAC	1 cut(s)	692
RsaNI	GTAC	1 cut(s)	691
RseI	CAYNNNNRTG	2 cut(s)	387, 747
SacI	GAGCTC	1 cut(s)	287
SaqAI	TTAA	1 cut(s)	126
SatI	GCNGC	2 cut(s)	351, 417
Sau96I	GGNCC	2 cut(s)	290, 403
ScrFI	CCNGG	1 cut(s)	237
SduI	GDGCHC	1 cut(s)	287
SfoI	GGCGCC	1 cut(s)	6
SinI	GGWCC	1 cut(s)	403
SmiMI	CAYNNNNRTG	2 cut(s)	387, 747
SphI	GCATGC	1 cut(s)	495
Sse9I	AATT	7 cut(s)	16, 38, 161, 299, 500, 550, 618
SsiI	CCGC	5 cut(s)	118, 157, 332, 416, 647
SspDI	GGCGCC	1 cut(s)	4
SspMI	CTAG	1 cut(s)	638
SstI	GAGCTC	1 cut(s)	287
StyD4I	CCNGG	1 cut(s)	235
TaaI	ACNGT	2 cut(s)	172, 460
TaiI	ACGT	3 cut(s)	126, 570, 669
TasI	AATT	7 cut(s)	16, 38, 161, 299, 500, 550, 618
TauI	GCSGC	1 cut(s)	419
TfiI	GAWTC	1 cut(s)	84
Tru1I	TTAA	1 cut(s)	126
Tru9I	TTAA	1 cut(s)	126
TscAI	CASTG	1 cut(s)	253
TseFI	GTSAC	1 cut(s)	812
TseI	GCWGC	1 cut(s)	350
Tsp45I	GTSAC	1 cut(s)	812
TspDTI	ATGAA	1 cut(s)	444
TspGWI	ACGGA	2 cut(s)	230, 400
TspRI	CASTG	1 cut(s)	253
Van91I	CCANNNNNTGG	1 cut(s)	242
VpaK11BI	GGWCC	1 cut(s)	403
XapI	RAATTY	3 cut(s)	299, 550, 618
XceI	RCATGY	1 cut(s)	495
XmiI	GTMKAC	1 cut(s)	570
XspI	CTAG	1 cut(s)	638

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.