Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb1

Orthogroup ID

OG0010133

Physical Location & Seq

Genomic Coordinates Forward (+)

8095836 .. 8097692

Gene Structure 1857 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_1g14520.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 780 bp

ATGGCTCGTGTGGCTTCAAACCCAGTCGGGCTCCACAGATTCCGGCCATGTTTCCAAACTGCTCAACTTCCCCAACAACTCAGAGCCTTCATTCCCCCCCGGACCAACCACCACCGCAGATTTCAGACCGTTGCTTGCCAGAAAACCCCAACTCCCAGTGACCCCTCCACCTCGGAAAAGTCGCCTGTTGAGCCAGTTTCTGGTAATGAAGTGAGTAGCACCGTTACGAGTTCCTCAACAGACTCTGGCATTCCCAAATATCCGAACAAAACTTCCAACAGGCAAGTAGCGGTGGTTTCTACTCTTGCAGCATTGGCACTTTTCTTATCAGGACGGCTCGACTTGGGTGTTTCTTTGAAGGACCTCACTGTTGCTGCATTACCTTACGAAGAGGCTCTGTCAAACGGCAAGCCTACTGTTGTTGAGTTCTATGCCGATTGGTGTGAAGTATGCAGGGAATTGGCTCCGGATGTGTACAAAGTTGAGCAGCAGTATAAGGGCCGTGTAAATTTTGTTATGCTCAATGTTGACAACACAAAGTGGGAACAAGAGCTTGATGAGTTTGGTGTTGAGGGTATTCCACACTTTGCGTTCCTAGATAAAGAGGGGAATGAAGAGGGCAATGTAGTAGGCAGGCTCCCAGAAAAGTACTTGCGAGAGAATGTGGATGCCCTCTCACGCGGAGAAGCCTCCATACCTCATGCCCGTGTAGTGGGACAGTATTCCAGTGCTGAAAACAGAAAGGTTCACCAAGTTGTTGATCCAAGAAGTCATGGATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004791 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006950 GO:0006979 GO:0008150 GO:0008152 GO:0009507 GO:0009534 GO:0009535 GO:0009536 GO:0009579 GO:0009636 GO:0009987 GO:0010190 GO:0015035 GO:0015036 GO:0016020 GO:0016043 GO:0016209 GO:0016491 GO:0016651 GO:0016667 GO:0016668 GO:0016671 GO:0017004 GO:0019725 GO:0022607 GO:0031976 GO:0031977 GO:0031984 GO:0033554 GO:0034357 GO:0034599 GO:0034622 GO:0042221 GO:0042592 GO:0042651 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043933 GO:0044085 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044436 GO:0044444 GO:0044446 GO:0044464 GO:0045454 GO:0047134 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0055035 GO:0055114 GO:0065003 GO:0065007 GO:0065008 GO:0070887 GO:0071840 GO:0097237 GO:0098754 GO:0098869 GO:1990748

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Thioredoxin

Protein Analysis

260

Amino Acids

28.67

Weight (kDa)

6.4

Isoelectric Point (pI)

30.79

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Thioredoxin	PF00085	128 - 223	6.8e-20	Thioredoxin
Thioredoxin_7	PF13899	129 - 200	6.5e-10	Thioredoxin-like
Thioredoxin_2	PF13098	134 - 218	2.8e-09	Thioredoxin-like domain
Thioredoxin_8	PF13905	136 - 198	2.2e-06	Thioredoxin-like

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0010133)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G37200
fragaria_vesca	FvH4_1g14520
malus_domestica	MD02G1158600.v1.1 MD15G1273400.v1.1 MD17G1248400.v1.1
prunus_persica	Prupe.7G145200_v2.0.a1
pyrus_communis	pycom02g12510 pycom15g23650 pycom17g24960 pycom17g25120
rosa_chinensis	RchiOBHm_Chr2g0103261
rosa_laevigata	RLG00000017219
rosa_multiflora	Rmu_sc0006743.1_g000012
rosa_roxburghii	Rroxscaffold_2G00139800
rosa_rugosa	Rorug02G0112900 Rorug02G0113000
rosa_samantha	Rh2AG161600 Rh2BG168500 Rh2CG168500 Rh2DG167400
rosa_wichuraiana	Rw2G012690

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	200
AccII	CGCG	1 cut(s)	681
AccIII	TCCGGA	1 cut(s)	466
AciI	CCGC	3 cut(s)	115, 290, 681
AclWI	GGATC	1 cut(s)	755
AcoI	YGGCCR	1 cut(s)	44
AcsI	RAATTY	1 cut(s)	508
AdeI	CACNNNGTG	1 cut(s)	540
AfaI	GTAC	2 cut(s)	476, 650
AfiI	CCNNNNNNNGG	2 cut(s)	200, 712
AgsI	TTSAA	2 cut(s)	18, 358
AloI	GAACNNNNNNTCC	2 cut(s)	257, 289
AluBI	AGCT	1 cut(s)	553
AluI	AGCT	1 cut(s)	553
AlwI	GGATC	1 cut(s)	755
AlwNI	CAGNNNCTG	2 cut(s)	200, 245
Aor13HI	TCCGGA	1 cut(s)	466
AoxI	GGCC	2 cut(s)	44, 499
ApeKI	GCWGC	3 cut(s)	308, 374, 487
ApoI	RAATTY	1 cut(s)	508
AspS9I	GGNCC	3 cut(s)	102, 361, 499
AsuC2I	CCSGG	1 cut(s)	100
AsuHPI	GGTGA	1 cut(s)	740
AvaII	GGWCC	2 cut(s)	102, 361
BanII	GRGCYC	1 cut(s)	33
BarI	GAAGNNNNNNTAC	2 cut(s)	678, 710
BauI	CACGAG	1 cut(s)	6
BbvI	GCAGC	3 cut(s)	320, 361, 499
BceAI	ACGGC	3 cut(s)	350, 421, 486
BcnI	CCSGG	1 cut(s)	100
BfaI	CTAG	1 cut(s)	596
BisI	GCNGC	3 cut(s)	309, 375, 488
BlsI	GCNGC	3 cut(s)	310, 376, 489
BmcAI	AGTACT	1 cut(s)	650
Bme1390I	CCNGG	1 cut(s)	100
Bme18I	GGWCC	2 cut(s)	102, 361
BmgT120I	GGNCC	3 cut(s)	102, 361, 499
BmiI	GGNNCC	3 cut(s)	32, 465, 638
BmrFI	CCNGG	1 cut(s)	100
BmrI	ACTGGG	2 cut(s)	17, 150
BmsI	GCATC	1 cut(s)	658
BmuI	ACTGGG	2 cut(s)	17, 150
BpuMI	CCSGG	1 cut(s)	100
BsaJI	CCNNGG	2 cut(s)	98, 171
BsaWI	WCCGGW	1 cut(s)	466
BsaXI	ACNNNNNCTCC	2 cut(s)	136, 166
Bsc4I	CCNNNNNNNGG	2 cut(s)	200, 712
Bse1I	ACTGG	4 cut(s)	23, 156, 194, 726
Bse3DI	GCAATG	1 cut(s)	628
BseAI	TCCGGA	1 cut(s)	466
BseDI	CCNNGG	2 cut(s)	98, 171
BseGI	GGATG	2 cut(s)	475, 673
BseLI	CCNNNNNNNGG	2 cut(s)	200, 712
BseMI	GCAATG	1 cut(s)	628
BseMII	CTCAG	1 cut(s)	94
BseNI	ACTGG	4 cut(s)	23, 156, 194, 726
BseXI	GCAGC	3 cut(s)	320, 361, 499
Bsh1236I	CGCG	1 cut(s)	681
BshFI	GGCC	2 cut(s)	46, 501
BsiSI	CCGG	3 cut(s)	43, 100, 467
BslFI	GGGAC	1 cut(s)	729
BslI	CCNNNNNNNGG	2 cut(s)	200, 712
BsmFI	GGGAC	1 cut(s)	729
BsmI	GAATGC	1 cut(s)	249
BsnI	GGCC	2 cut(s)	46, 501
Bsp1286I	GDGCHC	1 cut(s)	33
Bsp13I	TCCGGA	1 cut(s)	466
Bsp1407I	TGTACA	1 cut(s)	474
Bsp143I	GATC	1 cut(s)	760
BspACI	CCGC	3 cut(s)	115, 290, 681
BspANI	GGCC	2 cut(s)	46, 501
BspCNI	CTCAG	1 cut(s)	93
BspEI	TCCGGA	1 cut(s)	466
BspFNI	CGCG	1 cut(s)	681
BspLI	GGNNCC	3 cut(s)	32, 465, 638
BspPI	GGATC	1 cut(s)	755
BsrDI	GCAATG	1 cut(s)	628
BsrGI	TGTACA	1 cut(s)	474
BsrI	ACTGG	4 cut(s)	23, 156, 194, 726
BssECI	CCNNGG	2 cut(s)	98, 171
BssMI	GATC	1 cut(s)	760
BssSI	CACGAG	1 cut(s)	6
Bst2BI	CACGAG	1 cut(s)	6
Bst4CI	ACNGT	5 cut(s)	130, 223, 370, 418, 720
Bst6I	CTCTTC	2 cut(s)	384, 609
BstAUI	TGTACA	1 cut(s)	474
BstC8I	GCNNGC	3 cut(s)	136, 410, 635
BstDEI	CTNAG	1 cut(s)	80
BstF5I	GGATG	2 cut(s)	475, 673
BstFNI	CGCG	1 cut(s)	681
BstKTI	GATC	1 cut(s)	763
BstMBI	GATC	1 cut(s)	760
BstMWI	GCNNNNNNNGC	3 cut(s)	11, 190, 314
BstSCI	CCNGG	1 cut(s)	98
BstUI	CGCG	1 cut(s)	681
BstV1I	GCAGC	3 cut(s)	320, 361, 499
BsuRI	GGCC	2 cut(s)	46, 501
BtsCI	GGATG	2 cut(s)	475, 673
BtsIMutI	CAGTG	3 cut(s)	163, 366, 733
Cac8I	GCNNGC	3 cut(s)	136, 410, 635
CaiI	CAGNNNCTG	2 cut(s)	200, 245
Cfr13I	GGNCC	3 cut(s)	102, 361, 499
Csp6I	GTAC	2 cut(s)	475, 649
CviAII	CATG	3 cut(s)	48, 701, 773
CviQI	GTAC	2 cut(s)	475, 649
DdeI	CTNAG	1 cut(s)	80
DpnI	GATC	1 cut(s)	762
DpnII	GATC	1 cut(s)	760
DraIII	CACNNNGTG	1 cut(s)	540
EaeI	YGGCCR	1 cut(s)	44
Eam1104I	CTCTTC	2 cut(s)	384, 609
EarI	CTCTTC	2 cut(s)	384, 609
Eco24I	GRGCYC	1 cut(s)	33
Eco47I	GGWCC	2 cut(s)	102, 361
EcoO109I	RGGNCCY	1 cut(s)	361
EcoT38I	GRGCYC	1 cut(s)	33
FaeI	CATG	3 cut(s)	51, 704, 776
FaiI	YATR	8 cut(s)	49, 432, 451, 495, 518, 695, 702, 774
FaqI	GGGAC	1 cut(s)	729
FatI	CATG	3 cut(s)	47, 700, 772
Fnu4HI	GCNGC	3 cut(s)	309, 375, 488
FokI	GGATG	2 cut(s)	482, 680
FriOI	GRGCYC	1 cut(s)	33
Fsp4HI	GCNGC	3 cut(s)	309, 375, 488
FspBI	CTAG	1 cut(s)	596
GluI	GCNGC	3 cut(s)	309, 375, 488
HaeIII	GGCC	2 cut(s)	46, 501
HapII	CCGG	3 cut(s)	43, 100, 467
Hin1II	CATG	3 cut(s)	51, 704, 776
HincII	GTYRAC	1 cut(s)	529
HindII	GTYRAC	1 cut(s)	529
HinfI	GANTC	2 cut(s)	39, 242
HpaII	CCGG	3 cut(s)	43, 100, 467
HphI	GGTGA	1 cut(s)	740
Hpy166II	GTNNAC	3 cut(s)	475, 529, 748
Hpy188I	TCNGA	4 cut(s)	83, 126, 175, 264
Hpy188III	TCNNGA	2 cut(s)	330, 467
Hpy8I	GTNNAC	3 cut(s)	475, 529, 748
HpyAV	CCTTC	2 cut(s)	97, 352
HpyCH4III	ACNGT	5 cut(s)	130, 223, 370, 418, 720
HpyCH4V	TGCA	3 cut(s)	308, 377, 453
HpyF10VI	GCNNNNNNNGC	3 cut(s)	11, 190, 314
HpyF3I	CTNAG	1 cut(s)	80
Hsp92II	CATG	3 cut(s)	51, 704, 776
Kpn2I	TCCGGA	1 cut(s)	466
Kzo9I	GATC	1 cut(s)	760
LmnI	GCTCC	3 cut(s)	36, 469, 642
Lsp1109I	GCAGC	3 cut(s)	320, 361, 499
LweI	GCATC	1 cut(s)	658
MaeI	CTAG	1 cut(s)	596
MaeIII	GTNAC	2 cut(s)	158, 223
MalI	GATC	1 cut(s)	762
MboI	GATC	1 cut(s)	760
MboII	GAAGA	2 cut(s)	401, 626
MhlI	GDGCHC	1 cut(s)	33
MluCI	AATT	2 cut(s)	458, 508
MlyI	GAGTC	1 cut(s)	236
MmeI	TCCRAC	1 cut(s)	300
MroI	TCCGGA	1 cut(s)	466
MslI	CAYNNNNRTG	1 cut(s)	705
MspI	CCGG	3 cut(s)	43, 100, 467
MspR9I	CCNGG	1 cut(s)	100
Mva1269I	GAATGC	1 cut(s)	249
MvnI	CGCG	1 cut(s)	681
MwoI	GCNNNNNNNGC	3 cut(s)	11, 190, 314
NciI	CCSGG	1 cut(s)	100
NdeII	GATC	1 cut(s)	760
NlaIII	CATG	3 cut(s)	51, 704, 776
NlaIV	GGNNCC	3 cut(s)	32, 465, 638
NmuCI	GTSAC	1 cut(s)	158
PctI	GAATGC	1 cut(s)	249
PfeI	GAWTC	1 cut(s)	39
PflMI	CCANNNNNTGG	1 cut(s)	200
PkrI	GCNGC	3 cut(s)	310, 376, 489
PleI	GAGTC	1 cut(s)	236
PpsI	GAGTC	1 cut(s)	236
PpuMI	RGGWCCY	1 cut(s)	361
Psp5II	RGGWCCY	1 cut(s)	361
PspN4I	GGNNCC	3 cut(s)	32, 465, 638
PspPI	GGNCC	3 cut(s)	102, 361, 499
PspPPI	RGGWCCY	1 cut(s)	361
PstNI	CAGNNNCTG	2 cut(s)	200, 245
RsaI	GTAC	2 cut(s)	476, 650
RsaNI	GTAC	2 cut(s)	475, 649
RseI	CAYNNNNRTG	1 cut(s)	705
SatI	GCNGC	3 cut(s)	309, 375, 488
Sau3AI	GATC	1 cut(s)	760
Sau96I	GGNCC	3 cut(s)	102, 361, 499
ScaI	AGTACT	1 cut(s)	650
SchI	GAGTC	1 cut(s)	236
ScrFI	CCNGG	1 cut(s)	100
SduI	GDGCHC	1 cut(s)	33
SetI	ASST	6 cut(s)	173, 366, 385, 555, 700, 747
SfaNI	GCATC	1 cut(s)	658
SinI	GGWCC	2 cut(s)	102, 361
SmiMI	CAYNNNNRTG	1 cut(s)	705
Sse9I	AATT	2 cut(s)	458, 508
SsiI	CCGC	3 cut(s)	115, 290, 681
SspMI	CTAG	1 cut(s)	596
StyD4I	CCNGG	1 cut(s)	98
TaaI	ACNGT	5 cut(s)	130, 223, 370, 418, 720
TaqI	TCGA	1 cut(s)	339
TasI	AATT	2 cut(s)	458, 508
TatI	WGTACW	2 cut(s)	474, 648
TfiI	GAWTC	1 cut(s)	39
TscAI	CASTG	3 cut(s)	163, 373, 733
TseFI	GTSAC	1 cut(s)	158
TseI	GCWGC	3 cut(s)	308, 374, 487
Tsp45I	GTSAC	1 cut(s)	158
TspDTI	ATGAA	3 cut(s)	79, 222, 627
TspRI	CASTG	3 cut(s)	163, 373, 733
Van91I	CCANNNNNTGG	1 cut(s)	200
VpaK11BI	GGWCC	2 cut(s)	102, 361
XapI	RAATTY	1 cut(s)	508
XspI	CTAG	1 cut(s)	596
ZrmI	AGTACT	1 cut(s)	650

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.