Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0006743.1

Orthogroup ID

OG0010133

Physical Location & Seq

Genomic Coordinates Reverse (-)

54054 .. 57637

Gene Structure 3584 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0006743.1_g000012.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1167 bp

atggctcgcttggcttcaaaccccgtcggactccatagattccggccatgcttccgaactgctcaacttccccaacaactcagagccttcattccctcccgaaccaacgaccaccgcagatttcagaccgttgcttgccagaaaaccccaaatcccagtgagccttccacctcggaaaagtcgccgcctgttgagccagtttctggtaatgaagtgagtagcacggttatgagtagttcctcgacagacccagctggcattccggaatttccaaacaaaaataccaacaggcaagtagcagtggtttctactcttgcggcattagcacttttcttatcaggacggctcgattttggtgtttctttaaaggacctaactgttgctgcattaccttacgaagaggctctctcgaatggcaagccgactgttgttgagttctatgctgattggtgtgaagtatgcagggaattagctccagatgtctacaaagttgagcagcagtataagggtcgtgtaaattttgttatgctcaatgttgacaacacaaagtgggaacaggagcttgatgagtttggtgttgagggtattccacactttgcattcctagataaagagggaaatgaagagggcaatgttactggcaggctcccagaaaagtacttgcgtgagaatgtggatgccctctcccgcggagaagcctccatacctcatgcccgtgagccgaaaaatctccaccggaaccggcctagaacagtccgaaccggccaccggaaaggactactaccgaagcagcagaaagaaaaaaaaaaaaaaaagggaaggcagcagatcagcccagcccagcgtccggcccaaaacctcacagcccaagcccaccagcaggcccagcgaagcccacgtgcaagccaagccgcaagccgccaagccgccgagccgcaagccgccaaggaacctgccacgtcaacaagccacgcaggcatccagtcagcagccacgtcagccacctgtgccacgtcagcagatcggtcaaccaaagtcaacgccggtcaacccccgccggcgacttttccggcagacttccggccacttttccggccaacttccggccgcttttcgacgattttccgggcacttttccggccaaatttccggcgaattttccggtag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004791 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006950 GO:0006979 GO:0008150 GO:0008152 GO:0009507 GO:0009534 GO:0009535 GO:0009536 GO:0009579 GO:0009636 GO:0009987 GO:0010190 GO:0015035 GO:0015036 GO:0016020 GO:0016043 GO:0016209 GO:0016491 GO:0016651 GO:0016667 GO:0016668 GO:0016671 GO:0017004 GO:0019725 GO:0022607 GO:0031976 GO:0031977 GO:0031984 GO:0033554 GO:0034357 GO:0034599 GO:0034622 GO:0042221 GO:0042592 GO:0042651 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043933 GO:0044085 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044436 GO:0044444 GO:0044446 GO:0044464 GO:0045454 GO:0047134 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0055035 GO:0055114 GO:0065003 GO:0065007 GO:0065008 GO:0070887 GO:0071840 GO:0097237 GO:0098754 GO:0098869 GO:1990748

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Thioredoxin

Protein Analysis

388

Amino Acids

42.99

Weight (kDa)

10.01

Isoelectric Point (pI)

45.86

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0010133)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G37200
fragaria_vesca	FvH4_1g14520
malus_domestica	MD02G1158600.v1.1 MD15G1273400.v1.1 MD17G1248400.v1.1
prunus_persica	Prupe.7G145200_v2.0.a1
pyrus_communis	pycom02g12510 pycom15g23650 pycom17g24960 pycom17g25120
rosa_chinensis	RchiOBHm_Chr2g0103261
rosa_laevigata	RLG00000017219
rosa_multiflora	Rmu_sc0006743.1_g000012
rosa_roxburghii	Rroxscaffold_2G00139800
rosa_rugosa	Rorug02G0112900 Rorug02G0113000
rosa_samantha	Rh2AG161600 Rh2BG168500 Rh2CG168500 Rh2DG167400
rosa_wichuraiana	Rw2G012690

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	961
AccB7I	CCANNNNNTGG	1 cut(s)	203
AccI	GTMKAC	1 cut(s)	483
AccII	CGCG	1 cut(s)	690
AccIII	TCCGGA	1 cut(s)	262
AcoI	YGGCCR	6 cut(s)	44, 763, 1082, 1094, 1105, 1139
AcsI	RAATTY	4 cut(s)	266, 517, 1144, 1155
AcvI	CACGTG	1 cut(s)	899
AdeI	CACNNNGTG	1 cut(s)	549
AfaI	GTAC	1 cut(s)	659
AfiI	CCNNNNNNNGG	5 cut(s)	203, 768, 847, 880, 1103
AgsI	TTSAA	1 cut(s)	18
AjiI	CACGTC	3 cut(s)	960, 996, 1014
AluBI	AGCT	3 cut(s)	254, 473, 562
AluI	AGCT	3 cut(s)	254, 473, 562
AlwNI	CAGNNNCTG	1 cut(s)	203
Aor13HI	TCCGGA	1 cut(s)	262
AoxI	GGCC	9 cut(s)	44, 743, 763, 849, 882, 1082, 1094, 1105, 1139
ApeKI	GCWGC	5 cut(s)	383, 496, 790, 823, 989
ApoI	RAATTY	4 cut(s)	266, 517, 1144, 1155
AspS9I	GGNCC	3 cut(s)	370, 850, 883
AsuC2I	CCSGG	1 cut(s)	1127
AvaII	GGWCC	1 cut(s)	370
BaeGI	GKGCMC	1 cut(s)	1132
BarI	GAAGNNNNNNTAC	2 cut(s)	687, 719
BbrPI	CACGTG	1 cut(s)	899
BbvI	GCAGC	5 cut(s)	370, 508, 802, 835, 1001
BceAI	ACGGC	1 cut(s)	359
BcnI	CCSGG	1 cut(s)	1127
BfaI	CTAG	2 cut(s)	605, 747
BfuAI	ACCTGC	1 cut(s)	961
BglI	GCCNNNNNGGC	1 cut(s)	975
BmcAI	AGTACT	1 cut(s)	659
Bme1390I	CCNGG	1 cut(s)	1127
Bme18I	GGWCC	1 cut(s)	370
BmgBI	CACGTC	3 cut(s)	960, 996, 1014
BmgT120I	GGNCC	3 cut(s)	370, 850, 883
BmiI	GGNNCC	3 cut(s)	647, 740, 951
BmrFI	CCNGG	1 cut(s)	1127
BmrI	ACTGGG	1 cut(s)	150
BmsI	GCATC	2 cut(s)	667, 987
BmuI	ACTGGG	1 cut(s)	150
BplI	GAGNNNNNCTC	2 cut(s)	392, 424
BpmI	CTGGAG	1 cut(s)	459
BpuMI	CCSGG	1 cut(s)	1127
BsaAI	YACGTR	1 cut(s)	899
BsaJI	CCNNGG	3 cut(s)	171, 688, 945
BsaWI	WCCGGW	4 cut(s)	262, 735, 768, 1161
Bsc4I	CCNNNNNNNGG	5 cut(s)	203, 768, 847, 880, 1103
Bse118I	RCCGGY	4 cut(s)	741, 761, 1043, 1057
Bse1I	ACTGG	4 cut(s)	156, 197, 643, 982
Bse3DI	GCAATG	1 cut(s)	637
BseAI	TCCGGA	1 cut(s)	262
BseDI	CCNNGG	3 cut(s)	171, 688, 945
BseGI	GGATG	2 cut(s)	682, 978
BseLI	CCNNNNNNNGG	5 cut(s)	203, 768, 847, 880, 1103
BseMI	GCAATG	1 cut(s)	637
BseMII	CTCAG	1 cut(s)	94
BseNI	ACTGG	4 cut(s)	156, 197, 643, 982
BseSI	GKGCMC	1 cut(s)	1132
BseX3I	CGGCCG	1 cut(s)	1105
BseXI	GCAGC	5 cut(s)	370, 508, 802, 835, 1001
BseYI	CCCAGC	4 cut(s)	250, 835, 840, 885
Bsh1236I	CGCG	1 cut(s)	690
Bsh1285I	CGRYCG	1 cut(s)	1108
BshFI	GGCC	9 cut(s)	46, 745, 765, 851, 884, 1084, 1096, 1107, 1141
BsiEI	CGRYCG	1 cut(s)	1108
BslI	CCNNNNNNNGG	5 cut(s)	203, 768, 847, 880, 1103
BsmI	GAATGC	2 cut(s)	258, 599
BsnI	GGCC	9 cut(s)	46, 745, 765, 851, 884, 1084, 1096, 1107, 1141
Bsp1286I	GDGCHC	1 cut(s)	1132
Bsp13I	TCCGGA	1 cut(s)	262
Bsp143I	GATC	2 cut(s)	828, 1021
BspANI	GGCC	9 cut(s)	46, 745, 765, 851, 884, 1084, 1096, 1107, 1141
BspCNI	CTCAG	1 cut(s)	93
BspEI	TCCGGA	1 cut(s)	262
BspFNI	CGCG	1 cut(s)	690
BspLI	GGNNCC	3 cut(s)	647, 740, 951
BspMI	ACCTGC	1 cut(s)	961
BsrDI	GCAATG	1 cut(s)	637
BsrFI	RCCGGY	4 cut(s)	741, 761, 1043, 1057
BsrI	ACTGG	4 cut(s)	156, 197, 643, 982
BssAI	RCCGGY	4 cut(s)	741, 761, 1043, 1057
BssECI	CCNNGG	3 cut(s)	171, 688, 945
BssMI	GATC	2 cut(s)	828, 1021
BssT1I	CCWWGG	1 cut(s)	945
Bst4CI	ACNGT	5 cut(s)	130, 226, 379, 427, 754
Bst6I	CTCTTC	2 cut(s)	393, 618
BstBAI	YACGTR	1 cut(s)	899
BstDEI	CTNAG	1 cut(s)	80
BstDSI	CCRYGG	1 cut(s)	688
BstF5I	GGATG	2 cut(s)	682, 978
BstFNI	CGCG	1 cut(s)	690
BstKTI	GATC	2 cut(s)	831, 1024
BstMBI	GATC	2 cut(s)	828, 1021
BstMCI	CGRYCG	1 cut(s)	1108
BstMWI	GCNNNNNNNGC	9 cut(s)	11, 193, 323, 886, 908, 975, 998, 1007, 1016
BstSCI	CCNGG	1 cut(s)	1125
BstSLI	GKGCMC	1 cut(s)	1132
BstUI	CGCG	1 cut(s)	690
BstV1I	GCAGC	5 cut(s)	370, 508, 802, 835, 1001
BstZI	CGGCCG	1 cut(s)	1105
BsuRI	GGCC	9 cut(s)	46, 745, 765, 851, 884, 1084, 1096, 1107, 1141
BtgI	CCRYGG	1 cut(s)	688
BtrI	CACGTC	3 cut(s)	960, 996, 1014
BtsCI	GGATG	2 cut(s)	682, 978
BtsI	GCAGTG	1 cut(s)	306
BtsIMutI	CAGTG	2 cut(s)	163, 306
BveI	ACCTGC	1 cut(s)	961
CaiI	CAGNNNCTG	1 cut(s)	203
Cfr10I	RCCGGY	4 cut(s)	741, 761, 1043, 1057
Cfr13I	GGNCC	3 cut(s)	370, 850, 883
Cfr42I	CCGCGG	1 cut(s)	691
CseI	GACGC	1 cut(s)	833
Csp6I	GTAC	1 cut(s)	658
CviAII	CATG	2 cut(s)	48, 710
CviQI	GTAC	1 cut(s)	658
DdeI	CTNAG	1 cut(s)	80
DpnI	GATC	2 cut(s)	830, 1023
DpnII	GATC	2 cut(s)	828, 1021
DraI	TTTAAA	1 cut(s)	366
DraIII	CACNNNGTG	1 cut(s)	549
EaeI	YGGCCR	6 cut(s)	44, 763, 1082, 1094, 1105, 1139
EagI	CGGCCG	1 cut(s)	1105
Eam1104I	CTCTTC	2 cut(s)	393, 618
EarI	CTCTTC	2 cut(s)	393, 618
EclXI	CGGCCG	1 cut(s)	1105
Eco130I	CCWWGG	1 cut(s)	945
Eco47I	GGWCC	1 cut(s)	370
Eco52I	CGGCCG	1 cut(s)	1105
Eco72I	CACGTG	1 cut(s)	899
EcoO109I	RGGNCCY	1 cut(s)	370
EcoT14I	CCWWGG	1 cut(s)	945
ErhI	CCWWGG	1 cut(s)	945
FaeI	CATG	2 cut(s)	51, 713
FaiI	YATR	9 cut(s)	36, 49, 230, 441, 460, 504, 527, 704, 711
FatI	CATG	2 cut(s)	47, 709
FauI	CCCGC	2 cut(s)	695, 1062
FblI	GTMKAC	1 cut(s)	483
FokI	GGATG	2 cut(s)	689, 965
FspBI	CTAG	2 cut(s)	605, 747
GsaI	CCCAGC	4 cut(s)	254, 839, 844, 889
GsuI	CTGGAG	1 cut(s)	459
HaeIII	GGCC	9 cut(s)	46, 745, 765, 851, 884, 1084, 1096, 1107, 1141
HgaI	GACGC	1 cut(s)	833
Hin1II	CATG	2 cut(s)	51, 713
HincII	GTYRAC	5 cut(s)	538, 963, 1029, 1039, 1049
HindII	GTYRAC	5 cut(s)	538, 963, 1029, 1039, 1049
HinfI	GANTC	2 cut(s)	30, 39
Hpy166II	GTNNAC	6 cut(s)	484, 538, 963, 1029, 1039, 1049
Hpy188I	TCNGA	6 cut(s)	29, 56, 83, 126, 175, 758
Hpy188III	TCNNGA	5 cut(s)	99, 263, 339, 409, 476
Hpy8I	GTNNAC	6 cut(s)	484, 538, 963, 1029, 1039, 1049
Hpy99I	CGWCG	2 cut(s)	29, 1120
HpyAV	CCTTC	3 cut(s)	97, 174, 813
HpyCH4III	ACNGT	5 cut(s)	130, 226, 379, 427, 754
HpyCH4IV	ACGT	4 cut(s)	898, 959, 995, 1013
HpyCH4V	TGCA	4 cut(s)	386, 462, 599, 902
HpyF10VI	GCNNNNNNNGC	9 cut(s)	11, 193, 323, 886, 908, 975, 998, 1007, 1016
HpyF3I	CTNAG	1 cut(s)	80
HpySE526I	ACGT	4 cut(s)	898, 959, 995, 1013
Hsp92II	CATG	2 cut(s)	51, 713
Kpn2I	TCCGGA	1 cut(s)	262
KroI	GCCGGC	1 cut(s)	1057
KroNI	GCCGGC	1 cut(s)	1059
KspI	CCGCGG	1 cut(s)	691
Kzo9I	GATC	2 cut(s)	828, 1021
LmnI	GCTCC	3 cut(s)	478, 559, 651
Lsp1109I	GCAGC	5 cut(s)	370, 508, 802, 835, 1001
LweI	GCATC	2 cut(s)	667, 987
MaeI	CTAG	2 cut(s)	605, 747
MaeII	ACGT	4 cut(s)	898, 959, 995, 1013
MaeIII	GTNAC	1 cut(s)	634
MalI	GATC	2 cut(s)	830, 1023
MboI	GATC	2 cut(s)	828, 1021
MboII	GAAGA	2 cut(s)	410, 635
MhlI	GDGCHC	1 cut(s)	1132
MluCI	AATT	5 cut(s)	266, 467, 517, 1144, 1155
MlyI	GAGTC	1 cut(s)	24
MmeI	TCCRAC	1 cut(s)	7
MreI	CGCCGGCG	1 cut(s)	1057
MroI	TCCGGA	1 cut(s)	262
MroNI	GCCGGC	1 cut(s)	1057
MseI	TTAA	1 cut(s)	365
MslI	CAYNNNNRTG	2 cut(s)	227, 714
MspA1I	CMGCKG	2 cut(s)	254, 690
MspR9I	CCNGG	1 cut(s)	1127
Mva1269I	GAATGC	2 cut(s)	258, 599
MvnI	CGCG	1 cut(s)	690
MwoI	GCNNNNNNNGC	9 cut(s)	11, 193, 323, 886, 908, 975, 998, 1007, 1016
NaeI	GCCGGC	1 cut(s)	1059
NciI	CCSGG	1 cut(s)	1127
NdeII	GATC	2 cut(s)	828, 1021
NgoMIV	GCCGGC	1 cut(s)	1057
NlaIII	CATG	2 cut(s)	51, 713
NlaIV	GGNNCC	3 cut(s)	647, 740, 951
NmeAIII	GCCGAG	1 cut(s)	955
PctI	GAATGC	2 cut(s)	258, 599
PdiI	GCCGGC	1 cut(s)	1059
PfeI	GAWTC	1 cut(s)	39
PflMI	CCANNNNNTGG	1 cut(s)	203
PleI	GAGTC	1 cut(s)	24
PmaCI	CACGTG	1 cut(s)	899
PmlI	CACGTG	1 cut(s)	899
PpsI	GAGTC	1 cut(s)	24
Ppu21I	YACGTR	1 cut(s)	899
PpuMI	RGGWCCY	1 cut(s)	370
Psp5II	RGGWCCY	1 cut(s)	370
PspCI	CACGTG	1 cut(s)	899
PspFI	CCCAGC	4 cut(s)	250, 835, 840, 885
PspN4I	GGNNCC	3 cut(s)	647, 740, 951
PspPI	GGNCC	3 cut(s)	370, 850, 883
PspPPI	RGGWCCY	1 cut(s)	370
PstNI	CAGNNNCTG	1 cut(s)	203
PvuII	CAGCTG	1 cut(s)	254
RsaI	GTAC	1 cut(s)	659
RsaNI	GTAC	1 cut(s)	658
RseI	CAYNNNNRTG	2 cut(s)	227, 714
SacII	CCGCGG	1 cut(s)	691
SaqAI	TTAA	1 cut(s)	365
Sau3AI	GATC	2 cut(s)	828, 1021
Sau96I	GGNCC	3 cut(s)	370, 850, 883
ScaI	AGTACT	1 cut(s)	659
SchI	GAGTC	1 cut(s)	24
ScrFI	CCNGG	1 cut(s)	1127
SduI	GDGCHC	1 cut(s)	1132
SfaNI	GCATC	2 cut(s)	667, 987
Sfr303I	CCGCGG	1 cut(s)	691
SgrAI	CRCCGGYG	1 cut(s)	1057
SgrBI	CCGCGG	1 cut(s)	691
SinI	GGWCC	1 cut(s)	370
SmiMI	CAYNNNNRTG	2 cut(s)	227, 714
Sse9I	AATT	5 cut(s)	266, 467, 517, 1144, 1155
SspMI	CTAG	2 cut(s)	605, 747
StyD4I	CCNGG	1 cut(s)	1125
StyI	CCWWGG	1 cut(s)	945
TaaI	ACNGT	5 cut(s)	130, 226, 379, 427, 754
TaiI	ACGT	4 cut(s)	901, 962, 998, 1016
TaqI	TCGA	4 cut(s)	242, 348, 410, 1115
TaqII	GACCGA	1 cut(s)	1014
TasI	AATT	5 cut(s)	266, 467, 517, 1144, 1155
TatI	WGTACW	1 cut(s)	657
TauI	GCSGC	8 cut(s)	187, 320, 914, 921, 929, 937, 944, 1110
TfiI	GAWTC	1 cut(s)	39
Tru1I	TTAA	1 cut(s)	365
Tru9I	TTAA	1 cut(s)	365
TscAI	CASTG	2 cut(s)	163, 306
TseI	GCWGC	5 cut(s)	383, 496, 790, 823, 989
TspDTI	ATGAA	3 cut(s)	79, 225, 636
TspRI	CASTG	2 cut(s)	163, 306
Van91I	CCANNNNNTGG	1 cut(s)	203
VpaK11BI	GGWCC	1 cut(s)	370
XapI	RAATTY	4 cut(s)	266, 517, 1144, 1155
XmiI	GTMKAC	1 cut(s)	483
XspI	CTAG	2 cut(s)	605, 747
ZrmI	AGTACT	1 cut(s)	659

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.