Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr02

Orthogroup ID

OG0010133

Physical Location & Seq

Genomic Coordinates Forward (+)

13213673 .. 13215734

Gene Structure 2062 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD02G1158600.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 762 bp

ATGGCTCGCGTGGCTTCGAACCCAGTTGGCTTCCATAGATTCCGGCCATGTTTCCAAACTCCTCCACTCCCCCGCTACGTTAAACCCTCTATCCACTTCCCAAACCACCACCGCCGATTTCCGACCGTTTCTTGCCAGCAAACCCCCTCCACGACGGAGAAGTCAGTTGTTGAGCCAGGCTCTGGCAGTGATAGCTGCAGTCAAGCTACGAGTTCCTCTACGAGCTCTGGCCCTCCGGAATTTCCAAACAAGAATACCAACAGGCAAGTAGCGGTGGTTTCCACTCTTGCAGCTCTGGCACTTTTCTTATCAGCAAGGCTCGATTTTGGTGTTTCTTTGAAGGACCTCTCCGTTGCGGCATTACCTTATGAAGAGGCTCTTTCAAACGGGAAGCCTACTGTTGTTGAGTTCTATGCCGATTGGTGTGAAGTATGCAGGGAATTAGCTCCAGATGTCTATAAAGTTGAGCAGAAGTATAAGGGTCGTGTAAATTTTGTTATGCTGAACGTAGACAACACAAAGTGGGAACAGGAGCTTGATGAGTTTGGTGTTGAGGGAATTCCACACTTTGCGTTCCTAGATAAAGCGGGAAACGAAGAGGGTAACGTAGTAGGCAGGCTTCCAGAGAAGTACCTGCTTGAAAATGTGGACGCTCTTGCCCGTGGAGAAGCCTCCATACCTCACGCTCGTGTAGTGGGGCAGTTTTCAAGTGCCGAGGCCAGAAAGGTTCACCAAGTTTCTGATGCAAGAAGTCACGGATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004791 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006950 GO:0006979 GO:0008150 GO:0008152 GO:0009507 GO:0009534 GO:0009535 GO:0009536 GO:0009579 GO:0009636 GO:0009987 GO:0010190 GO:0015035 GO:0015036 GO:0016020 GO:0016043 GO:0016209 GO:0016491 GO:0016651 GO:0016667 GO:0016668 GO:0016671 GO:0017004 GO:0019725 GO:0022607 GO:0031976 GO:0031977 GO:0031984 GO:0033554 GO:0034357 GO:0034599 GO:0034622 GO:0042221 GO:0042592 GO:0042651 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043933 GO:0044085 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044436 GO:0044444 GO:0044446 GO:0044464 GO:0045454 GO:0047134 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0055035 GO:0055114 GO:0065003 GO:0065007 GO:0065008 GO:0070887 GO:0071840 GO:0097237 GO:0098754 GO:0098869 GO:1990748

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Thioredoxin

Protein Analysis

254

Amino Acids

27.83

Weight (kDa)

6.45

Isoelectric Point (pI)

30.22

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Thioredoxin	PF00085	123 - 217	1.5e-19	Thioredoxin
Thioredoxin_7	PF13899	123 - 194	7.5e-10	Thioredoxin-like
Thioredoxin_2	PF13098	128 - 212	4.4e-09	Thioredoxin-like domain
Thioredoxin_8	PF13905	130 - 182	2.1e-06	Thioredoxin-like

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0010133)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G37200
fragaria_vesca	FvH4_1g14520
malus_domestica	MD02G1158600.v1.1 MD15G1273400.v1.1 MD17G1248400.v1.1
prunus_persica	Prupe.7G145200_v2.0.a1
pyrus_communis	pycom02g12510 pycom15g23650 pycom17g24960 pycom17g25120
rosa_chinensis	RchiOBHm_Chr2g0103261
rosa_laevigata	RLG00000017219
rosa_multiflora	Rmu_sc0006743.1_g000012
rosa_roxburghii	Rroxscaffold_2G00139800
rosa_rugosa	Rorug02G0112900 Rorug02G0113000
rosa_samantha	Rh2AG161600 Rh2BG168500 Rh2CG168500 Rh2DG167400
rosa_wichuraiana	Rw2G012690

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	160
Acc36I	ACCTGC	1 cut(s)	642
AccB7I	CCANNNNNTGG	1 cut(s)	182
AccI	GTMKAC	1 cut(s)	510
AccII	CGCG	1 cut(s)	9
AccIII	TCCGGA	1 cut(s)	235
AciI	CCGC	5 cut(s)	73, 112, 272, 356, 587
AcoI	YGGCCR	1 cut(s)	44
AcsI	RAATTY	3 cut(s)	239, 490, 558
AdeI	CACNNNGTG	1 cut(s)	522
AfaI	GTAC	1 cut(s)	632
AfiI	CCNNNNNNNGG	1 cut(s)	182
AgsI	TTSAA	4 cut(s)	340, 384, 641, 708
AjnI	CCWGG	1 cut(s)	175
AleI	CACNNNNGTG	1 cut(s)	687
AluBI	AGCT	6 cut(s)	195, 206, 225, 293, 446, 535
AluI	AGCT	6 cut(s)	195, 206, 225, 293, 446, 535
Alw21I	GWGCWC	1 cut(s)	227
AlwNI	CAGNNNCTG	1 cut(s)	182
Aor13HI	TCCGGA	1 cut(s)	235
AoxI	GGCC	3 cut(s)	44, 229, 717
ApeKI	GCWGC	2 cut(s)	195, 290
ApoI	RAATTY	3 cut(s)	239, 490, 558
AspS9I	GGNCC	2 cut(s)	230, 343
AsuHPI	GGTGA	1 cut(s)	722
AsuII	TTCGAA	1 cut(s)	17
AvaII	GGWCC	1 cut(s)	343
BanII	GRGCYC	1 cut(s)	227
BarI	GAAGNNNNNNTAC	4 cut(s)	603, 635, 660, 692
BauI	CACGAG	1 cut(s)	687
Bbv12I	GWGCWC	1 cut(s)	227
BbvI	GCAGC	2 cut(s)	182, 302
BciT130I	CCWGG	1 cut(s)	177
BfaI	CTAG	1 cut(s)	578
BfmI	CTRYAG	1 cut(s)	196
BfuAI	ACCTGC	1 cut(s)	642
BisI	GCNGC	3 cut(s)	196, 291, 357
BlsI	GCNGC	3 cut(s)	197, 292, 358
Bme1390I	CCNGG	1 cut(s)	177
Bme18I	GGWCC	1 cut(s)	343
BmgT120I	GGNCC	2 cut(s)	230, 343
BmrFI	CCNGG	1 cut(s)	177
BmrI	ACTGGG	1 cut(s)	17
BmsI	GCATC	1 cut(s)	733
BmuI	ACTGGG	1 cut(s)	17
BplI	GAGNNNNNCTC	2 cut(s)	164, 196
BpmI	CTGGAG	1 cut(s)	432
Bpu14I	TTCGAA	1 cut(s)	17
BsaJI	CCNNGG	2 cut(s)	661, 714
BsaWI	WCCGGW	1 cut(s)	235
Bsc4I	CCNNNNNNNGG	1 cut(s)	182
Bse1I	ACTGG	1 cut(s)	23
BseAI	TCCGGA	1 cut(s)	235
BseBI	CCWGG	1 cut(s)	177
BseDI	CCNNGG	2 cut(s)	661, 714
BseLI	CCNNNNNNNGG	1 cut(s)	182
BseNI	ACTGG	1 cut(s)	23
BseRI	GAGGAG	1 cut(s)	51
BseXI	GCAGC	2 cut(s)	182, 302
Bsh1236I	CGCG	1 cut(s)	9
Bsh1285I	CGRYCG	1 cut(s)	126
BshFI	GGCC	3 cut(s)	46, 231, 719
BsiEI	CGRYCG	1 cut(s)	126
BsiHKAI	GWGCWC	1 cut(s)	227
BsiSI	CCGG	2 cut(s)	43, 236
BslI	CCNNNNNNNGG	1 cut(s)	182
BsnI	GGCC	3 cut(s)	46, 231, 719
Bsp119I	TTCGAA	1 cut(s)	17
Bsp1286I	GDGCHC	1 cut(s)	227
Bsp13I	TCCGGA	1 cut(s)	235
BspACI	CCGC	5 cut(s)	73, 112, 272, 356, 587
BspANI	GGCC	3 cut(s)	46, 231, 719
BspEI	TCCGGA	1 cut(s)	235
BspFNI	CGCG	1 cut(s)	9
BspMAI	CTGCAG	1 cut(s)	200
BspMI	ACCTGC	1 cut(s)	642
BspT104I	TTCGAA	1 cut(s)	17
BsrI	ACTGG	1 cut(s)	23
BssECI	CCNNGG	2 cut(s)	661, 714
BssSI	CACGAG	1 cut(s)	687
Bst2BI	CACGAG	1 cut(s)	687
Bst2UI	CCWGG	1 cut(s)	177
Bst4CI	ACNGT	2 cut(s)	127, 400
Bst6I	CTCTTC	2 cut(s)	366, 591
BstBI	TTCGAA	1 cut(s)	17
BstC8I	GCNNGC	3 cut(s)	7, 137, 617
BstDSI	CCRYGG	1 cut(s)	661
BstFNI	CGCG	1 cut(s)	9
BstMCI	CGRYCG	1 cut(s)	126
BstMWI	GCNNNNNNNGC	3 cut(s)	11, 192, 296
BstNI	CCWGG	1 cut(s)	177
BstSCI	CCNGG	1 cut(s)	175
BstSFI	CTRYAG	1 cut(s)	196
BstUI	CGCG	1 cut(s)	9
BstV1I	GCAGC	2 cut(s)	182, 302
BsuRI	GGCC	3 cut(s)	46, 231, 719
BtgI	CCRYGG	1 cut(s)	661
BtsI	GCAGTG	1 cut(s)	193
BtsIMutI	CAGTG	1 cut(s)	193
BveI	ACCTGC	1 cut(s)	642
Cac8I	GCNNGC	3 cut(s)	7, 137, 617
CaiI	CAGNNNCTG	1 cut(s)	182
Cfr13I	GGNCC	2 cut(s)	230, 343
CseI	GACGC	1 cut(s)	659
Csp6I	GTAC	1 cut(s)	631
CviAII	CATG	1 cut(s)	48
CviQI	GTAC	1 cut(s)	631
DraIII	CACNNNGTG	1 cut(s)	522
DrdI	GACNNNNNNGTC	1 cut(s)	160
DseDI	GACNNNNNNGTC	1 cut(s)	160
EaeI	YGGCCR	1 cut(s)	44
Eam1104I	CTCTTC	2 cut(s)	366, 591
EarI	CTCTTC	2 cut(s)	366, 591
Ecl136II	GAGCTC	1 cut(s)	225
Eco24I	GRGCYC	1 cut(s)	227
Eco47I	GGWCC	1 cut(s)	343
Eco53kI	GAGCTC	1 cut(s)	225
EcoICRI	GAGCTC	1 cut(s)	225
EcoO109I	RGGNCCY	1 cut(s)	343
EcoRI	GAATTC	1 cut(s)	558
EcoRII	CCWGG	1 cut(s)	175
EcoT38I	GRGCYC	1 cut(s)	227
FaeI	CATG	1 cut(s)	51
FaiI	YATR	9 cut(s)	36, 49, 369, 414, 433, 459, 477, 500, 677
FalI	AAGNNNNNCTT	2 cut(s)	363, 395
FatI	CATG	1 cut(s)	47
FauI	CCCGC	2 cut(s)	80, 580
FblI	GTMKAC	1 cut(s)	510
Fnu4HI	GCNGC	3 cut(s)	196, 291, 357
FriOI	GRGCYC	1 cut(s)	227
Fsp4HI	GCNGC	3 cut(s)	196, 291, 357
FspBI	CTAG	1 cut(s)	578
GluI	GCNGC	3 cut(s)	196, 291, 357
GsuI	CTGGAG	1 cut(s)	432
HaeIII	GGCC	3 cut(s)	46, 231, 719
HapII	CCGG	2 cut(s)	43, 236
HgaI	GACGC	1 cut(s)	659
Hin1II	CATG	1 cut(s)	51
HinfI	GANTC	1 cut(s)	39
HpaII	CCGG	2 cut(s)	43, 236
HphI	GGTGA	1 cut(s)	722
Hpy166II	GTNNAC	3 cut(s)	511, 649, 730
Hpy188I	TCNGA	2 cut(s)	123, 742
Hpy188III	TCNNGA	3 cut(s)	236, 449, 623
Hpy8I	GTNNAC	3 cut(s)	511, 649, 730
Hpy99I	CGWCG	1 cut(s)	157
HpyAV	CCTTC	1 cut(s)	334
HpyCH4III	ACNGT	2 cut(s)	127, 400
HpyCH4IV	ACGT	3 cut(s)	78, 507, 606
HpyCH4V	TGCA	4 cut(s)	198, 290, 435, 746
HpyF10VI	GCNNNNNNNGC	3 cut(s)	11, 192, 296
HpySE526I	ACGT	3 cut(s)	78, 507, 606
Hsp92II	CATG	1 cut(s)	51
Kpn2I	TCCGGA	1 cut(s)	235
LmnI	GCTCC	2 cut(s)	451, 532
Lsp1109I	GCAGC	2 cut(s)	182, 302
LweI	GCATC	1 cut(s)	733
MaeI	CTAG	1 cut(s)	578
MaeII	ACGT	3 cut(s)	78, 507, 606
MaeIII	GTNAC	2 cut(s)	602, 752
MboII	GAAGA	2 cut(s)	383, 608
MhlI	GDGCHC	1 cut(s)	227
MluCI	AATT	4 cut(s)	239, 440, 490, 558
MmeI	TCCRAC	1 cut(s)	146
MroI	TCCGGA	1 cut(s)	235
MseI	TTAA	1 cut(s)	81
MslI	CAYNNNNRTG	1 cut(s)	687
MspI	CCGG	2 cut(s)	43, 236
MspR9I	CCNGG	1 cut(s)	177
MvaI	CCWGG	1 cut(s)	177
MvnI	CGCG	1 cut(s)	9
MwoI	GCNNNNNNNGC	3 cut(s)	11, 192, 296
NlaIII	CATG	1 cut(s)	51
NmeAIII	GCCGAG	1 cut(s)	739
NmuCI	GTSAC	1 cut(s)	752
NspV	TTCGAA	1 cut(s)	17
OliI	CACNNNNGTG	1 cut(s)	687
PfeI	GAWTC	1 cut(s)	39
PflMI	CCANNNNNTGG	1 cut(s)	182
PkrI	GCNGC	3 cut(s)	197, 292, 358
PpuMI	RGGWCCY	1 cut(s)	343
Psp124BI	GAGCTC	1 cut(s)	227
Psp5II	RGGWCCY	1 cut(s)	343
Psp6I	CCWGG	1 cut(s)	175
PspGI	CCWGG	1 cut(s)	175
PspPI	GGNCC	2 cut(s)	230, 343
PspPPI	RGGWCCY	1 cut(s)	343
PstI	CTGCAG	1 cut(s)	200
PstNI	CAGNNNCTG	1 cut(s)	182
RsaI	GTAC	1 cut(s)	632
RsaNI	GTAC	1 cut(s)	631
RseI	CAYNNNNRTG	1 cut(s)	687
SacI	GAGCTC	1 cut(s)	227
SaqAI	TTAA	1 cut(s)	81
SatI	GCNGC	3 cut(s)	196, 291, 357
Sau96I	GGNCC	2 cut(s)	230, 343
ScrFI	CCNGG	1 cut(s)	177
SduI	GDGCHC	1 cut(s)	227
SfaNI	GCATC	1 cut(s)	733
SfcI	CTRYAG	1 cut(s)	196
SfuI	TTCGAA	1 cut(s)	17
SinI	GGWCC	1 cut(s)	343
SmiMI	CAYNNNNRTG	1 cut(s)	687
Sse9I	AATT	4 cut(s)	239, 440, 490, 558
SsiI	CCGC	5 cut(s)	73, 112, 272, 356, 587
SspMI	CTAG	1 cut(s)	578
SstI	GAGCTC	1 cut(s)	227
StyD4I	CCNGG	1 cut(s)	175
TaaI	ACNGT	2 cut(s)	127, 400
TaiI	ACGT	3 cut(s)	81, 510, 609
TaqI	TCGA	2 cut(s)	17, 321
TasI	AATT	4 cut(s)	239, 440, 490, 558
TauI	GCSGC	1 cut(s)	359
TfiI	GAWTC	1 cut(s)	39
Tru1I	TTAA	1 cut(s)	81
Tru9I	TTAA	1 cut(s)	81
TscAI	CASTG	1 cut(s)	193
TseFI	GTSAC	1 cut(s)	752
TseI	GCWGC	2 cut(s)	195, 290
Tsp45I	GTSAC	1 cut(s)	752
TspDTI	ATGAA	1 cut(s)	384
TspGWI	ACGGA	2 cut(s)	170, 340
TspRI	CASTG	1 cut(s)	193
Van91I	CCANNNNNTGG	1 cut(s)	182
VpaK11BI	GGWCC	1 cut(s)	343
XapI	RAATTY	3 cut(s)	239, 490, 558
XmiI	GTMKAC	1 cut(s)	510
XspI	CTAG	1 cut(s)	578

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.