Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr4

Orthogroup ID

OG0010133

Physical Location & Seq

Genomic Coordinates Forward (+)

14224390 .. 14226612

Gene Structure 2223 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000017219

Sequence Viewer

CDS Protein Promoter (2k)

Length: 771 bp

ATGGCTCGCTTGGCTTCAAACCCCGTCGGACTCCATAGATTCCGGCCATGTTTCCGAAGTGTTCAACTTCCCCAACAACTCAGAGCCTTCATTCCCTCCCGAACCAGCGACCGCCGCAGATTTCAGACCGTTGCTTGCCAGAAAACCCCAAATCCCAGTGAGCCTTCCACCTCGGAAAAGTCGCCGCCTGTTGAGTCAGTTTCTGATAATGAAGTGAGTAGCACGGTTATGAGTAGTTCCTCGACAGACTCTGGCATTCCGGAATTTCCAAACAAAAATACCAACAGGCAAGTAGCAGTGGTTTCTACTCTTGCGGCATTAGCACTTTTCTTATCAGGACGGCTCGATTTTGGTGTTTCTTTAAAGGACCTAACTGTTGCTGCATTACCTTACGAAGAGGCTCTCTCAAATGGCAAGCCTACTGTTGTTGAGTTCTATGCTGATTGGTGTGAAGTATGCAGGGAATTAGCTCCAGATGTCTACAAAGTTGAGCAGCAGTATAAGGGTCGTGTAAATTTTGTTATGCTCAATGTTGACAACACAAAGTGGGAACAGGAGCTTGATGAGTTTGGTGTTGAGGGTATTCCACACTTTGCATTCCTTGATAAAGAGGGAAATGAAGAGGGCAATGTTACTGGCAGGCTCCCAGAAAAATACTTGCGTGAGAATGTGGATGCCCTCTCCCGTGGAGAAGCCTCCATACCTCATGCCCGTGTAGTGGGGCATCATCGTGTTGTTAAAAGAATTACATCAGAGAGGTTAAACCTTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004791 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006950 GO:0006979 GO:0008150 GO:0008152 GO:0009507 GO:0009534 GO:0009535 GO:0009536 GO:0009579 GO:0009636 GO:0009987 GO:0010190 GO:0015035 GO:0015036 GO:0016020 GO:0016043 GO:0016209 GO:0016491 GO:0016651 GO:0016667 GO:0016668 GO:0016671 GO:0017004 GO:0019725 GO:0022607 GO:0031976 GO:0031977 GO:0031984 GO:0033554 GO:0034357 GO:0034599 GO:0034622 GO:0042221 GO:0042592 GO:0042651 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043933 GO:0044085 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044436 GO:0044444 GO:0044446 GO:0044464 GO:0045454 GO:0047134 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0055035 GO:0055114 GO:0065003 GO:0065007 GO:0065008 GO:0070887 GO:0071840 GO:0097237 GO:0098754 GO:0098869 GO:1990748

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Thioredoxin

Protein Analysis

257

Amino Acids

28.59

Weight (kDa)

6.25

Isoelectric Point (pI)

41.91

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Thioredoxin	PF00085	130 - 225	7.5e-20	Thioredoxin
Thioredoxin_7	PF13899	131 - 202	6.4e-10	Thioredoxin-like
Thioredoxin_2	PF13098	136 - 220	2e-09	Thioredoxin-like domain
Thioredoxin_8	PF13905	138 - 200	2.2e-06	Thioredoxin-like

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0010133)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G37200
fragaria_vesca	FvH4_1g14520
malus_domestica	MD02G1158600.v1.1 MD15G1273400.v1.1 MD17G1248400.v1.1
prunus_persica	Prupe.7G145200_v2.0.a1
pyrus_communis	pycom02g12510 pycom15g23650 pycom17g24960 pycom17g25120
rosa_chinensis	RchiOBHm_Chr2g0103261
rosa_laevigata	RLG00000017219
rosa_multiflora	Rmu_sc0006743.1_g000012
rosa_roxburghii	Rroxscaffold_2G00139800
rosa_rugosa	Rorug02G0112900 Rorug02G0113000
rosa_samantha	Rh2AG161600 Rh2BG168500 Rh2CG168500 Rh2DG167400
rosa_wichuraiana	Rw2G012690

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	480
AccIII	TCCGGA	1 cut(s)	259
AciI	CCGC	4 cut(s)	112, 115, 185, 314
AcoI	YGGCCR	1 cut(s)	44
AcsI	RAATTY	2 cut(s)	263, 514
AdeI	CACNNNGTG	1 cut(s)	546
AfiI	CCNNNNNNNGG	1 cut(s)	718
AgsI	TTSAA	2 cut(s)	18, 65
AluBI	AGCT	2 cut(s)	470, 559
AluI	AGCT	2 cut(s)	470, 559
AlwNI	CAGNNNCTG	2 cut(s)	203, 251
Aor13HI	TCCGGA	1 cut(s)	259
AoxI	GGCC	1 cut(s)	44
ApeKI	GCWGC	2 cut(s)	380, 493
ApoI	RAATTY	2 cut(s)	263, 514
AspS9I	GGNCC	1 cut(s)	367
AvaII	GGWCC	1 cut(s)	367
BarI	GAAGNNNNNNTAC	2 cut(s)	684, 716
BbvI	GCAGC	2 cut(s)	367, 505
BceAI	ACGGC	1 cut(s)	356
BisI	GCNGC	5 cut(s)	115, 185, 315, 381, 494
BlsI	GCNGC	5 cut(s)	116, 186, 316, 382, 495
Bme18I	GGWCC	1 cut(s)	367
BmgT120I	GGNCC	1 cut(s)	367
BmiI	GGNNCC	1 cut(s)	644
BmrI	ACTGGG	1 cut(s)	150
BmsI	GCATC	2 cut(s)	664, 733
BmuI	ACTGGG	1 cut(s)	150
BplI	GAGNNNNNCTC	2 cut(s)	389, 421
BpmI	CTGGAG	1 cut(s)	456
BsaJI	CCNNGG	2 cut(s)	171, 685
BsaWI	WCCGGW	1 cut(s)	259
Bsc4I	CCNNNNNNNGG	1 cut(s)	718
Bse1I	ACTGG	2 cut(s)	156, 640
Bse3DI	GCAATG	1 cut(s)	634
BseAI	TCCGGA	1 cut(s)	259
BseDI	CCNNGG	2 cut(s)	171, 685
BseGI	GGATG	1 cut(s)	679
BseLI	CCNNNNNNNGG	1 cut(s)	718
BseMI	GCAATG	1 cut(s)	634
BseMII	CTCAG	1 cut(s)	94
BseNI	ACTGG	2 cut(s)	156, 640
BseXI	GCAGC	2 cut(s)	367, 505
Bsh1285I	CGRYCG	1 cut(s)	112
BshFI	GGCC	1 cut(s)	46
BsiEI	CGRYCG	1 cut(s)	112
BsiSI	CCGG	2 cut(s)	43, 260
BslI	CCNNNNNNNGG	1 cut(s)	718
BsmI	GAATGC	2 cut(s)	255, 596
BsnI	GGCC	1 cut(s)	46
Bsp13I	TCCGGA	1 cut(s)	259
BspACI	CCGC	4 cut(s)	112, 115, 185, 314
BspANI	GGCC	1 cut(s)	46
BspCNI	CTCAG	1 cut(s)	93
BspEI	TCCGGA	1 cut(s)	259
BspLI	GGNNCC	1 cut(s)	644
BsrDI	GCAATG	1 cut(s)	634
BsrI	ACTGG	2 cut(s)	156, 640
BssECI	CCNNGG	2 cut(s)	171, 685
Bst4CI	ACNGT	4 cut(s)	130, 226, 376, 424
Bst6I	CTCTTC	2 cut(s)	390, 615
BstC8I	GCNNGC	4 cut(s)	7, 136, 416, 641
BstDEI	CTNAG	1 cut(s)	80
BstDSI	CCRYGG	1 cut(s)	685
BstF5I	GGATG	1 cut(s)	679
BstMCI	CGRYCG	1 cut(s)	112
BstMWI	GCNNNNNNNGC	3 cut(s)	11, 114, 320
BstV1I	GCAGC	2 cut(s)	367, 505
BsuRI	GGCC	1 cut(s)	46
BtgI	CCRYGG	1 cut(s)	685
BtsCI	GGATG	1 cut(s)	679
BtsI	GCAGTG	1 cut(s)	303
BtsIMutI	CAGTG	2 cut(s)	163, 303
Cac8I	GCNNGC	4 cut(s)	7, 136, 416, 641
CaiI	CAGNNNCTG	2 cut(s)	203, 251
Cfr13I	GGNCC	1 cut(s)	367
CviAII	CATG	2 cut(s)	48, 707
DdeI	CTNAG	1 cut(s)	80
DraI	TTTAAA	1 cut(s)	363
DraIII	CACNNNGTG	1 cut(s)	546
EaeI	YGGCCR	1 cut(s)	44
Eam1104I	CTCTTC	2 cut(s)	390, 615
EarI	CTCTTC	2 cut(s)	390, 615
Eco47I	GGWCC	1 cut(s)	367
EcoO109I	RGGNCCY	1 cut(s)	367
FaeI	CATG	2 cut(s)	51, 710
FaiI	YATR	9 cut(s)	36, 49, 230, 438, 457, 501, 524, 701, 708
FatI	CATG	2 cut(s)	47, 706
FblI	GTMKAC	1 cut(s)	480
Fnu4HI	GCNGC	5 cut(s)	115, 185, 315, 381, 494
FokI	GGATG	1 cut(s)	686
Fsp4HI	GCNGC	5 cut(s)	115, 185, 315, 381, 494
GluI	GCNGC	5 cut(s)	115, 185, 315, 381, 494
GsuI	CTGGAG	1 cut(s)	456
HaeIII	GGCC	1 cut(s)	46
HapII	CCGG	2 cut(s)	43, 260
Hin1II	CATG	2 cut(s)	51, 710
HincII	GTYRAC	1 cut(s)	535
HindII	GTYRAC	1 cut(s)	535
HinfI	GANTC	4 cut(s)	30, 39, 194, 248
HpaII	CCGG	2 cut(s)	43, 260
Hpy166II	GTNNAC	2 cut(s)	481, 535
Hpy188I	TCNGA	7 cut(s)	29, 56, 83, 126, 175, 205, 754
Hpy188III	TCNNGA	4 cut(s)	99, 260, 336, 473
Hpy8I	GTNNAC	2 cut(s)	481, 535
Hpy99I	CGWCG	1 cut(s)	29
HpyAV	CCTTC	2 cut(s)	97, 174
HpyCH4III	ACNGT	4 cut(s)	130, 226, 376, 424
HpyCH4V	TGCA	3 cut(s)	383, 459, 596
HpyF10VI	GCNNNNNNNGC	3 cut(s)	11, 114, 320
HpyF3I	CTNAG	1 cut(s)	80
Hsp92II	CATG	2 cut(s)	51, 710
Kpn2I	TCCGGA	1 cut(s)	259
LmnI	GCTCC	3 cut(s)	475, 556, 648
Lsp1109I	GCAGC	2 cut(s)	367, 505
LweI	GCATC	2 cut(s)	664, 733
MaeIII	GTNAC	1 cut(s)	631
MboII	GAAGA	2 cut(s)	407, 632
MluCI	AATT	4 cut(s)	263, 464, 514, 744
MlyI	GAGTC	3 cut(s)	24, 203, 242
MmeI	TCCRAC	1 cut(s)	7
MroI	TCCGGA	1 cut(s)	259
MseI	TTAA	4 cut(s)	362, 738, 761, 769
MslI	CAYNNNNRTG	3 cut(s)	227, 711, 729
MspI	CCGG	2 cut(s)	43, 260
Mva1269I	GAATGC	2 cut(s)	255, 596
MwoI	GCNNNNNNNGC	3 cut(s)	11, 114, 320
NlaIII	CATG	2 cut(s)	51, 710
NlaIV	GGNNCC	1 cut(s)	644
PctI	GAATGC	2 cut(s)	255, 596
PfeI	GAWTC	1 cut(s)	39
PkrI	GCNGC	5 cut(s)	116, 186, 316, 382, 495
PleI	GAGTC	3 cut(s)	24, 202, 242
PpsI	GAGTC	3 cut(s)	24, 202, 242
PpuMI	RGGWCCY	1 cut(s)	367
Psp5II	RGGWCCY	1 cut(s)	367
PspN4I	GGNNCC	1 cut(s)	644
PspPI	GGNCC	1 cut(s)	367
PspPPI	RGGWCCY	1 cut(s)	367
PstNI	CAGNNNCTG	2 cut(s)	203, 251
RseI	CAYNNNNRTG	3 cut(s)	227, 711, 729
SaqAI	TTAA	4 cut(s)	362, 738, 761, 769
SatI	GCNGC	5 cut(s)	115, 185, 315, 381, 494
Sau96I	GGNCC	1 cut(s)	367
SchI	GAGTC	3 cut(s)	24, 203, 242
SetI	ASST	8 cut(s)	173, 372, 391, 472, 561, 706, 761, 768
SfaNI	GCATC	2 cut(s)	664, 733
SinI	GGWCC	1 cut(s)	367
SmiMI	CAYNNNNRTG	3 cut(s)	227, 711, 729
Sse9I	AATT	4 cut(s)	263, 464, 514, 744
SsiI	CCGC	4 cut(s)	112, 115, 185, 314
TaaI	ACNGT	4 cut(s)	130, 226, 376, 424
TaqI	TCGA	2 cut(s)	242, 345
TasI	AATT	4 cut(s)	263, 464, 514, 744
TauI	GCSGC	3 cut(s)	117, 187, 317
TfiI	GAWTC	1 cut(s)	39
Tru1I	TTAA	4 cut(s)	362, 738, 761, 769
Tru9I	TTAA	4 cut(s)	362, 738, 761, 769
TscAI	CASTG	2 cut(s)	163, 303
TseI	GCWGC	2 cut(s)	380, 493
TspDTI	ATGAA	3 cut(s)	79, 225, 633
TspRI	CASTG	2 cut(s)	163, 303
VpaK11BI	GGWCC	1 cut(s)	367
XapI	RAATTY	2 cut(s)	263, 514
XmiI	GTMKAC	1 cut(s)	480

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.