Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp07

Orthogroup ID

OG0010133

Physical Location & Seq

Genomic Coordinates Reverse (-)

15881601 .. 15884346

Gene Structure 2746 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.7G145200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 777 bp

ATGGCTCGCGTGGCTTCAAACCCAGTTGGTCTCCATAGATTCCGGCCATGTTTCCAGGTTGCTCAGCTTCCCCAACATGCTAGAACCTCTCTTCACTTCCGAAACGAGCACCGCAGATTTCCAACCGTTTCTTGCCAACAAACCCCAGATCCAACCGAGACCTCCACAACGGAGAAATCGATTGTTGAGCCAGGCTCAGGCAATGATAGCAGTAGCCAAGCTACGAGTTCCTCAAGAGACTCTGGCCCTCCAGAGTTTCCGAACAAAAATACCAACAAGCAAGTAGCATTGGTTTCTACTCTTGCAGCACTAGCACTTTTCTTATCAGGACGACTAGATTTTGGTGTTTCTTTGAAGGATTTATCTGTTGCTGCCTTACCTTATGAAGAGGCCCTGTCAAATGGGAAGCCTACTGTTGTTGAGTTCTATGCCGATTGGTGTGAAGTATGCAAGGAATTAGCTCCAGATGTCTATAAAGTTGAGCAGCAGTATAAGGGTCGTGTAAATTTTGTTATGCTGAATGTTGACAACACAAAGTGGGAACAGGAGCTTGATGAGTTTGGTGTTGAGGGTATTCCACACTTCGCATTCCTAGATAAAAAGGGCAATGAAGAGGGTAACGTAGTAGGTAGGCTTCCAGAGAAGTACCTGCTTGAGAATGTGGATGCCCTCGCCCGTGGAGAAGCCTCCATACCTCACGCTCGTGTAGTGGGGCAGTTTTCAAGTGCTGAAGCCAGAAAGGTTCACCAAGTTGCTGATCCAAGAAGTCATGGATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004791 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006950 GO:0006979 GO:0008150 GO:0008152 GO:0009507 GO:0009534 GO:0009535 GO:0009536 GO:0009579 GO:0009636 GO:0009987 GO:0010190 GO:0015035 GO:0015036 GO:0016020 GO:0016043 GO:0016209 GO:0016491 GO:0016651 GO:0016667 GO:0016668 GO:0016671 GO:0017004 GO:0019725 GO:0022607 GO:0031976 GO:0031977 GO:0031984 GO:0033554 GO:0034357 GO:0034599 GO:0034622 GO:0042221 GO:0042592 GO:0042651 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043933 GO:0044085 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044436 GO:0044444 GO:0044446 GO:0044464 GO:0045454 GO:0047134 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0055035 GO:0055114 GO:0065003 GO:0065007 GO:0065008 GO:0070887 GO:0071840 GO:0097237 GO:0098754 GO:0098869 GO:1990748

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Thioredoxin

Protein Analysis

259

Amino Acids

28.46

Weight (kDa)

5.93

Isoelectric Point (pI)

29.36

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0010133)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G37200
fragaria_vesca	FvH4_1g14520
malus_domestica	MD02G1158600.v1.1 MD15G1273400.v1.1 MD17G1248400.v1.1
prunus_persica	Prupe.7G145200_v2.0.a1
pyrus_communis	pycom02g12510 pycom15g23650 pycom17g24960 pycom17g25120
rosa_chinensis	RchiOBHm_Chr2g0103261
rosa_laevigata	RLG00000017219
rosa_multiflora	Rmu_sc0006743.1_g000012
rosa_roxburghii	Rroxscaffold_2G00139800
rosa_rugosa	Rorug02G0112900 Rorug02G0113000
rosa_samantha	Rh2AG161600 Rh2BG168500 Rh2CG168500 Rh2DG167400
rosa_wichuraiana	Rw2G012690

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	657
AccII	CGCG	1 cut(s)	9
AciI	CCGC	1 cut(s)	112
AclWI	GGATC	2 cut(s)	143, 752
AcoI	YGGCCR	1 cut(s)	44
AcsI	RAATTY	1 cut(s)	505
AcuI	CTGAAG	1 cut(s)	750
AdeI	CACNNNGTG	1 cut(s)	537
AfaI	GTAC	1 cut(s)	647
AfiI	CCNNNNNNNGG	1 cut(s)	197
AgsI	TTSAA	3 cut(s)	18, 355, 723
AjnI	CCWGG	2 cut(s)	54, 190
AleI	CACNNNNGTG	1 cut(s)	702
AluBI	AGCT	4 cut(s)	67, 221, 461, 550
AluI	AGCT	4 cut(s)	67, 221, 461, 550
Alw21I	GWGCWC	1 cut(s)	111
Alw26I	GTCTC	3 cut(s)	35, 152, 231
AlwI	GGATC	2 cut(s)	143, 752
AoxI	GGCC	3 cut(s)	44, 244, 390
ApeKI	GCWGC	3 cut(s)	305, 371, 484
ApoI	RAATTY	1 cut(s)	505
AspS9I	GGNCC	2 cut(s)	245, 391
AsuHPI	GGTGA	1 cut(s)	737
BarI	GAAGNNNNNNTAC	4 cut(s)	618, 650, 675, 707
BauI	CACGAG	1 cut(s)	702
Bbv12I	GWGCWC	1 cut(s)	111
BbvI	GCAGC	3 cut(s)	317, 358, 496
BciT130I	CCWGG	2 cut(s)	56, 192
BcoDI	GTCTC	3 cut(s)	35, 152, 231
BfaI	CTAG	4 cut(s)	81, 311, 335, 593
BfuAI	ACCTGC	1 cut(s)	657
BisI	GCNGC	3 cut(s)	306, 372, 485
BlpI	GCTNAGC	1 cut(s)	63
BlsI	GCNGC	3 cut(s)	307, 373, 486
Bme1390I	CCNGG	2 cut(s)	56, 192
BmgT120I	GGNCC	2 cut(s)	245, 391
BmrFI	CCNGG	2 cut(s)	56, 192
BmrI	ACTGGG	1 cut(s)	17
BmsI	GCATC	1 cut(s)	655
BmuI	ACTGGG	1 cut(s)	17
BplI	GAGNNNNNCTC	2 cut(s)	179, 211
BpmI	CTGGAG	2 cut(s)	234, 447
Bpu10I	CCTNAGC	1 cut(s)	196
Bpu1102I	GCTNAGC	1 cut(s)	63
BpuEI	CTTGAG	2 cut(s)	217, 674
Bsa29I	ATCGAT	1 cut(s)	179
BsaI	GGTCTC	2 cut(s)	35, 152
BsaJI	CCNNGG	1 cut(s)	676
Bsc4I	CCNNNNNNNGG	1 cut(s)	197
Bse1I	ACTGG	1 cut(s)	23
Bse3DI	GCAATG	2 cut(s)	208, 613
BseBI	CCWGG	2 cut(s)	56, 192
BseCI	ATCGAT	1 cut(s)	179
BseDI	CCNNGG	1 cut(s)	676
BseGI	GGATG	1 cut(s)	670
BseLI	CCNNNNNNNGG	1 cut(s)	197
BseMI	GCAATG	2 cut(s)	208, 613
BseMII	CTCAG	2 cut(s)	77, 210
BseNI	ACTGG	1 cut(s)	23
BseXI	GCAGC	3 cut(s)	317, 358, 496
Bsh1236I	CGCG	1 cut(s)	9
BshFI	GGCC	3 cut(s)	46, 246, 392
BshVI	ATCGAT	1 cut(s)	179
BsiHKAI	GWGCWC	1 cut(s)	111
BsiSI	CCGG	1 cut(s)	43
BslI	CCNNNNNNNGG	1 cut(s)	197
BsmAI	GTCTC	3 cut(s)	35, 152, 231
BsmI	GAATGC	1 cut(s)	587
BsnI	GGCC	3 cut(s)	46, 246, 392
Bso31I	GGTCTC	2 cut(s)	35, 152
Bsp1286I	GDGCHC	1 cut(s)	111
Bsp143I	GATC	2 cut(s)	148, 757
Bsp1720I	GCTNAGC	1 cut(s)	63
BspACI	CCGC	1 cut(s)	112
BspANI	GGCC	3 cut(s)	46, 246, 392
BspCNI	CTCAG	2 cut(s)	76, 209
BspDI	ATCGAT	1 cut(s)	179
BspFNI	CGCG	1 cut(s)	9
BspMI	ACCTGC	1 cut(s)	657
BspPI	GGATC	2 cut(s)	143, 752
BspTNI	GGTCTC	2 cut(s)	35, 152
BsrDI	GCAATG	2 cut(s)	208, 613
BsrI	ACTGG	1 cut(s)	23
BssECI	CCNNGG	1 cut(s)	676
BssMI	GATC	2 cut(s)	148, 757
BssSI	CACGAG	1 cut(s)	702
Bst2BI	CACGAG	1 cut(s)	702
Bst2UI	CCWGG	2 cut(s)	56, 192
Bst4CI	ACNGT	2 cut(s)	127, 415
Bst6I	CTCTTC	3 cut(s)	96, 381, 606
BstC8I	GCNNGC	1 cut(s)	7
BstDEI	CTNAG	2 cut(s)	63, 196
BstDSI	CCRYGG	1 cut(s)	676
BstF5I	GGATG	1 cut(s)	670
BstFNI	CGCG	1 cut(s)	9
BstKTI	GATC	2 cut(s)	151, 760
BstMAI	GTCTC	3 cut(s)	35, 152, 231
BstMBI	GATC	2 cut(s)	148, 757
BstMWI	GCNNNNNNNGC	3 cut(s)	11, 207, 311
BstNI	CCWGG	2 cut(s)	56, 192
BstNSI	RCATGY	1 cut(s)	80
BstSCI	CCNGG	2 cut(s)	54, 190
BstUI	CGCG	1 cut(s)	9
BstV1I	GCAGC	3 cut(s)	317, 358, 496
BstX2I	RGATCY	1 cut(s)	148
BstYI	RGATCY	1 cut(s)	148
Bsu15I	ATCGAT	1 cut(s)	179
BsuRI	GGCC	3 cut(s)	46, 246, 392
BsuTUI	ATCGAT	1 cut(s)	179
BtgI	CCRYGG	1 cut(s)	676
BtsCI	GGATG	1 cut(s)	670
BveI	ACCTGC	1 cut(s)	657
Cac8I	GCNNGC	1 cut(s)	7
Cfr13I	GGNCC	2 cut(s)	245, 391
ClaI	ATCGAT	1 cut(s)	179
Csp6I	GTAC	1 cut(s)	646
CviAII	CATG	3 cut(s)	48, 77, 770
CviQI	GTAC	1 cut(s)	646
DdeI	CTNAG	2 cut(s)	63, 196
DpnI	GATC	2 cut(s)	150, 759
DpnII	GATC	2 cut(s)	148, 757
DraIII	CACNNNGTG	1 cut(s)	537
EaeI	YGGCCR	1 cut(s)	44
Eam1104I	CTCTTC	3 cut(s)	96, 381, 606
EarI	CTCTTC	3 cut(s)	96, 381, 606
Eco31I	GGTCTC	2 cut(s)	35, 152
Eco57I	CTGAAG	1 cut(s)	750
EcoO109I	RGGNCCY	1 cut(s)	391
EcoRII	CCWGG	2 cut(s)	54, 190
FaeI	CATG	3 cut(s)	51, 80, 773
FatI	CATG	3 cut(s)	47, 76, 769
Fnu4HI	GCNGC	3 cut(s)	306, 372, 485
FokI	GGATG	1 cut(s)	677
Fsp4HI	GCNGC	3 cut(s)	306, 372, 485
FspBI	CTAG	4 cut(s)	81, 311, 335, 593
GluI	GCNGC	3 cut(s)	306, 372, 485
GsuI	CTGGAG	2 cut(s)	234, 447
HaeIII	GGCC	3 cut(s)	46, 246, 392
HapII	CCGG	1 cut(s)	43
Hin1II	CATG	3 cut(s)	51, 80, 773
HincII	GTYRAC	1 cut(s)	526
HindII	GTYRAC	1 cut(s)	526
HinfI	GANTC	2 cut(s)	39, 239
HpaII	CCGG	1 cut(s)	43
HphI	GGTGA	1 cut(s)	737
Hpy166II	GTNNAC	2 cut(s)	526, 745
Hpy188I	TCNGA	2 cut(s)	101, 261
Hpy188III	TCNNGA	5 cut(s)	234, 251, 327, 464, 638
Hpy8I	GTNNAC	2 cut(s)	526, 745
HpyAV	CCTTC	1 cut(s)	349
HpyCH4III	ACNGT	2 cut(s)	127, 415
HpyCH4IV	ACGT	1 cut(s)	621
HpyCH4V	TGCA	2 cut(s)	305, 450
HpyF10VI	GCNNNNNNNGC	3 cut(s)	11, 207, 311
HpyF3I	CTNAG	2 cut(s)	63, 196
HpySE526I	ACGT	1 cut(s)	621
Hsp92II	CATG	3 cut(s)	51, 80, 773
Kzo9I	GATC	2 cut(s)	148, 757
LmnI	GCTCC	2 cut(s)	466, 547
Lsp1109I	GCAGC	3 cut(s)	317, 358, 496
LweI	GCATC	1 cut(s)	655
MaeI	CTAG	4 cut(s)	81, 311, 335, 593
MaeII	ACGT	1 cut(s)	621
MaeIII	GTNAC	1 cut(s)	617
MalI	GATC	2 cut(s)	150, 759
MboI	GATC	2 cut(s)	148, 757
MboII	GAAGA	3 cut(s)	83, 398, 623
MflI	RGATCY	1 cut(s)	148
MhlI	GDGCHC	1 cut(s)	111
MluCI	AATT	2 cut(s)	455, 505
MlyI	GAGTC	1 cut(s)	233
MmeI	TCCRAC	2 cut(s)	146, 176
MslI	CAYNNNNRTG	1 cut(s)	702
MspI	CCGG	1 cut(s)	43
MspR9I	CCNGG	2 cut(s)	56, 192
Mva1269I	GAATGC	1 cut(s)	587
MvaI	CCWGG	2 cut(s)	56, 192
MvnI	CGCG	1 cut(s)	9
MwoI	GCNNNNNNNGC	3 cut(s)	11, 207, 311
NdeII	GATC	2 cut(s)	148, 757
NlaIII	CATG	3 cut(s)	51, 80, 773
NspI	RCATGY	1 cut(s)	80
OliI	CACNNNNGTG	1 cut(s)	702
PcsI	WCGNNNNNNNCGW	1 cut(s)	176
PctI	GAATGC	1 cut(s)	587
PfeI	GAWTC	1 cut(s)	39
PkrI	GCNGC	3 cut(s)	307, 373, 486
PleI	GAGTC	1 cut(s)	233
PpsI	GAGTC	1 cut(s)	233
Psp6I	CCWGG	2 cut(s)	54, 190
PspGI	CCWGG	2 cut(s)	54, 190
PspPI	GGNCC	2 cut(s)	245, 391
PsuI	RGATCY	1 cut(s)	148
RsaI	GTAC	1 cut(s)	647
RsaNI	GTAC	1 cut(s)	646
RseI	CAYNNNNRTG	1 cut(s)	702
SatI	GCNGC	3 cut(s)	306, 372, 485
Sau3AI	GATC	2 cut(s)	148, 757
Sau96I	GGNCC	2 cut(s)	245, 391
SchI	GAGTC	1 cut(s)	233
ScrFI	CCNGG	2 cut(s)	56, 192
SduI	GDGCHC	1 cut(s)	111
SfaNI	GCATC	1 cut(s)	655
SmiMI	CAYNNNNRTG	1 cut(s)	702
SmlI	CTYRAG	2 cut(s)	232, 653
SmoI	CTYRAG	2 cut(s)	232, 653
Sse9I	AATT	2 cut(s)	455, 505
SsiI	CCGC	1 cut(s)	112
SspMI	CTAG	4 cut(s)	81, 311, 335, 593
StyD4I	CCNGG	2 cut(s)	54, 190
TaaI	ACNGT	2 cut(s)	127, 415
TaiI	ACGT	1 cut(s)	624
TaqI	TCGA	1 cut(s)	179
TasI	AATT	2 cut(s)	455, 505
TfiI	GAWTC	1 cut(s)	39
TseI	GCWGC	3 cut(s)	305, 371, 484
TspDTI	ATGAA	2 cut(s)	399, 624
TspGWI	ACGGA	1 cut(s)	185
XapI	RAATTY	1 cut(s)	505
XceI	RCATGY	1 cut(s)	80
XspI	CTAG	4 cut(s)	81, 311, 335, 593

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.