AT4G38020

rRNA methyltransferase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
4
OG0010487
Physical Location & Seq
Forward (+)
17861435 .. 17863098
1664 bp
Loading structure...
UTR
Exon/CDS
Intron
AT4G38020.1

Sequence Viewer

Length: 1059 bp
ATGCATTGCGGATGTGTATTCGCTTCACAAACTGTGTCATCACTTCTCCCATTTGAAATTAAAACCTATGCGTCAAAGCTTCGAGCTTCGTCAGCCCAATTACCGAGAACCCAGATTCAGATAAACCCTTCAGATGATCTCTCTATCTACGGTTCAGATAAATCTCCGGCGAATAGAGTTTCGTTGCCGTCTCATGTAAATTCTATCACCAGTACTACAAACCCTTTTGTCAAACACTGCTTGAAGCTCCGCCAAAGTTCCTCGTATCGCCACGCTCATGGCTCTGTTCTTGTCGTCGGAACTATCCCCATCAGGGAAGTATGTATGTTTCAAACGAATAAGCAAGGAATGACCACTGAAATTGAGTGCCTACTTCTTCATGAGGAAGCTAAGATTCCACAAGGATTAGAGAGTCTAAGTATCCGAATTGTTAGAGTAAGTTCTTTAGTGATGAAGAAACTCTCTGGAGTGCAATCTACTGAATCTGTTGAAGCCATTGCCTTGATGAGAATCCCTAGCAGCTTTACTGATCTTAAAGATGATAAAGACATCATAACAGACTGCAACAAATGGTTCCCTTCTGCTCACAGAGTTCTTGTTCTGGACAGCATACAGGATCCAGGGAACCTTGGCACATTAGTCAGATCAGCTATGGCTTTTAATTGGGATGGTGCATTTCTACTTCCGGGTTGTTGCGATCCGTACAACGACAAAGCTCTTCGAGCAAGCCGAGGTGCTTCGTTTCAGCTACCTATAGTTTCCGGGAATTGGAACCATCTTAAGCTTCTAGAAAATGAGTTCCAGATGAAGCTATTAGCTGGTCATCCAGCAACGACTACTCAGAAACTGAAACCTGTCTCCAAACTTTCGGTAGAGTTTGCTCAATCTTTAGCAGAGAAGCCTTTATGCTTGATTTTAGGTAGTGAAGGGAATGGTTTGTCTGAGCAGGCACGGAAAGTATGCGTGCTAGTGAGCATTCCCATGGCAGGTGACTTTGAATCTCTTAACGTCTCTGTTGCTGGTGGTATTTTCTTGTACATGCTTCAAAATCTTGTTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
SpoU_methylase

Protein Analysis

352

Amino Acids

38.46

Weight (kDa)

8.48

Isoelectric Point (pI)

40.38

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
SpoU_methylase PF00588 198 - 346 8.4e-33 SpoU rRNA Methylase family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 977
Acc36I ACCTGC 1 cut(s) 977
AciI CCGC 2 cut(s) 9, 250
AclWI GGATC 3 cut(s) 611, 624, 692
AcsI RAATTY 1 cut(s) 199
AcuI CTGAAG 1 cut(s) 114
AfaI GTAC 3 cut(s) 214, 704, 1037
AfiI CCNNNNNNNGG 3 cut(s) 313, 768, 986
AflII CTTAAG 1 cut(s) 779
AgsI TTSAA 6 cut(s) 56, 244, 332, 491, 998, 1046
AjnI CCWGG 1 cut(s) 619
Alw26I GTCTC 3 cut(s) 195, 862, 1015
AlwI GGATC 3 cut(s) 611, 624, 692
AlwNI CAGNNNCTG 1 cut(s) 847
ApeKI GCWGC 1 cut(s) 519
ApoI RAATTY 1 cut(s) 199
AsuC2I CCSGG 2 cut(s) 687, 763
AsuHPI GGTGA 2 cut(s) 199, 1001
BamHI GGATCC 1 cut(s) 616
BbvI GCAGC 1 cut(s) 531
BccI CCATC 3 cut(s) 317, 662, 783
BceAI ACGGC 1 cut(s) 172
BciT130I CCWGG 1 cut(s) 621
BciVI GTATCC 1 cut(s) 431
BcnI CCSGG 2 cut(s) 687, 763
BcoDI GTCTC 3 cut(s) 195, 862, 1015
BfaI CTAG 3 cut(s) 516, 788, 968
BfmI CTRYAG 1 cut(s) 753
BfrI CTTAAG 1 cut(s) 779
BfuAI ACCTGC 1 cut(s) 977
BfuI GTATCC 1 cut(s) 431
BisI GCNGC 1 cut(s) 520
BlsI GCNGC 1 cut(s) 521
BmcAI AGTACT 1 cut(s) 214
Bme1390I CCNGG 3 cut(s) 621, 687, 763
BmiI GGNNCC 4 cut(s) 575, 618, 626, 773
BmrFI CCNGG 3 cut(s) 621, 687, 763
BpmI CTGGAG 1 cut(s) 486
BpuMI CCSGG 2 cut(s) 687, 763
BsaBI GATNNNNATC 1 cut(s) 509
BsaJI CCNNGG 4 cut(s) 620, 628, 730, 981
Bsc4I CCNNNNNNNGG 3 cut(s) 313, 768, 986
Bse1I ACTGG 1 cut(s) 210
Bse3DI GCAATG 2 cut(s) 4, 495
Bse8I GATNNNNATC 1 cut(s) 509
BseBI CCWGG 1 cut(s) 621
BseDI CCNNGG 4 cut(s) 620, 628, 730, 981
BseGI GGATG 3 cut(s) 17, 673, 823
BseJI GATNNNNATC 1 cut(s) 509
BseLI CCNNNNNNNGG 3 cut(s) 313, 768, 986
BseMI GCAATG 2 cut(s) 4, 495
BseMII CTCAG 2 cut(s) 854, 933
BseNI ACTGG 1 cut(s) 210
BseXI GCAGC 1 cut(s) 531
BsiSI CCGG 3 cut(s) 167, 686, 762
BslI CCNNNNNNNGG 3 cut(s) 313, 768, 986
BsmAI GTCTC 3 cut(s) 195, 862, 1015
BsmBI CGTCTC 2 cut(s) 195, 1015
BsmI GAATGC 1 cut(s) 975
Bsp1407I TGTACA 1 cut(s) 1035
Bsp143I GATC 5 cut(s) 136, 529, 616, 644, 697
Bsp19I CCATGG 1 cut(s) 981
BspACI CCGC 2 cut(s) 9, 250
BspCNI CTCAG 2 cut(s) 853, 934
BspHI TCATGA 1 cut(s) 379
BspLI GGNNCC 4 cut(s) 575, 618, 626, 773
BspMI ACCTGC 1 cut(s) 977
BspPI GGATC 3 cut(s) 611, 624, 692
BspQI GCTCTTC 1 cut(s) 723
BspTI CTTAAG 1 cut(s) 779
BsrDI GCAATG 2 cut(s) 4, 495
BsrGI TGTACA 1 cut(s) 1035
BsrI ACTGG 1 cut(s) 210
BssECI CCNNGG 4 cut(s) 620, 628, 730, 981
BssMI GATC 5 cut(s) 136, 529, 616, 644, 697
BssT1I CCWWGG 2 cut(s) 628, 981
Bst2UI CCWGG 1 cut(s) 621
Bst4CI ACNGT 2 cut(s) 34, 152
Bst6I CTCTTC 1 cut(s) 723
BstAFI CTTAAG 1 cut(s) 779
BstAUI TGTACA 1 cut(s) 1035
BstC8I GCNNGC 3 cut(s) 727, 948, 965
BstDEI CTNAG 4 cut(s) 390, 416, 840, 942
BstDSI CCRYGG 1 cut(s) 981
BstF5I GGATG 3 cut(s) 17, 673, 823
BstKTI GATC 5 cut(s) 139, 532, 619, 647, 700
BstMAI GTCTC 3 cut(s) 195, 862, 1015
BstMBI GATC 5 cut(s) 136, 529, 616, 644, 697
BstMWI GCNNNNNNNGC 2 cut(s) 92, 722
BstNI CCWGG 1 cut(s) 621
BstNSI RCATGY 1 cut(s) 1042
BstSCI CCNGG 3 cut(s) 619, 685, 761
BstSFI CTRYAG 1 cut(s) 753
BstV1I GCAGC 1 cut(s) 531
BstX2I RGATCY 1 cut(s) 616
BstXI CCANNNNNNTGG 1 cut(s) 278
BstYI RGATCY 1 cut(s) 616
BsuI GTATCC 1 cut(s) 431
BtgI CCRYGG 1 cut(s) 981
BtsCI GGATG 3 cut(s) 17, 673, 823
BtsI GCAGTG 1 cut(s) 235
BtsIMutI CAGTG 2 cut(s) 235, 354
BveI ACCTGC 1 cut(s) 977
Cac8I GCNNGC 3 cut(s) 727, 948, 965
CaiI CAGNNNCTG 1 cut(s) 847
CciI TCATGA 1 cut(s) 379
CseI GACGC 1 cut(s) 60
Csp6I GTAC 3 cut(s) 213, 703, 1036
CspCI CAANNNNNGTGG 2 cut(s) 343, 378
CviAII CATG 5 cut(s) 194, 278, 380, 982, 1039
CviQI GTAC 3 cut(s) 213, 703, 1036
DdeI CTNAG 4 cut(s) 390, 416, 840, 942
DpnI GATC 5 cut(s) 138, 531, 618, 646, 699
DpnII GATC 5 cut(s) 136, 529, 616, 644, 697
Eam1104I CTCTTC 1 cut(s) 723
EarI CTCTTC 1 cut(s) 723
EciI GGCGGA 1 cut(s) 239
Eco130I CCWWGG 2 cut(s) 628, 981
Eco57I CTGAAG 1 cut(s) 114
EcoRII CCWGG 1 cut(s) 619
EcoT14I CCWWGG 2 cut(s) 628, 981
EcoT22I ATGCAT 1 cut(s) 6
ErhI CCWWGG 2 cut(s) 628, 981
Esp3I CGTCTC 2 cut(s) 195, 1015
FaeI CATG 5 cut(s) 197, 281, 383, 985, 1042
FatI CATG 5 cut(s) 193, 277, 379, 981, 1038
Fnu4HI GCNGC 1 cut(s) 520
FokI GGATG 3 cut(s) 24, 680, 810
Fsp4HI GCNGC 1 cut(s) 520
FspBI CTAG 3 cut(s) 516, 788, 968
GluI GCNGC 1 cut(s) 520
GsuI CTGGAG 1 cut(s) 486
HapII CCGG 3 cut(s) 167, 686, 762
HgaI GACGC 1 cut(s) 60
Hin1II CATG 5 cut(s) 197, 281, 383, 985, 1042
HindIII AAGCTT 2 cut(s) 77, 782
HinfI GANTC 6 cut(s) 115, 394, 412, 482, 510, 998
HpaII CCGG 3 cut(s) 167, 686, 762
HphI GGTGA 2 cut(s) 199, 1001
Hpy188I TCNGA 8 cut(s) 120, 133, 157, 299, 425, 644, 843, 943
Hpy188III TCNNGA 5 cut(s) 380, 465, 602, 788, 802
Hpy99I CGWCG 1 cut(s) 299
HpyAV CCTTC 3 cut(s) 138, 588, 920
HpyCH4III ACNGT 2 cut(s) 34, 152
HpyCH4IV ACGT 1 cut(s) 1008
HpyCH4V TGCA 4 cut(s) 4, 472, 564, 674
HpyF10VI GCNNNNNNNGC 2 cut(s) 92, 722
HpyF3I CTNAG 4 cut(s) 390, 416, 840, 942
HpySE526I ACGT 1 cut(s) 1008
Hsp92II CATG 5 cut(s) 197, 281, 383, 985, 1042
Kzo9I GATC 5 cut(s) 136, 529, 616, 644, 697
LguI GCTCTTC 1 cut(s) 723
LmnI GCTCC 1 cut(s) 252
Lsp1109I GCAGC 1 cut(s) 531
MaeI CTAG 3 cut(s) 516, 788, 968
MaeII ACGT 1 cut(s) 1008
MaeIII GTNAC 1 cut(s) 989
MalI GATC 5 cut(s) 138, 531, 618, 646, 699
MboI GATC 5 cut(s) 136, 529, 616, 644, 697
MboII GAAGA 3 cut(s) 368, 466, 710
MflI RGATCY 1 cut(s) 616
MluCI AATT 7 cut(s) 57, 98, 199, 360, 426, 661, 766
MlyI GAGTC 1 cut(s) 421
MmeI TCCRAC 1 cut(s) 277
MnlI CCTC 3 cut(s) 271, 376, 725
Mph1103I ATGCAT 1 cut(s) 6
MseI TTAA 5 cut(s) 60, 534, 660, 780, 1005
MslI CAYNNNNRTG 2 cut(s) 276, 980
MspCI CTTAAG 1 cut(s) 779
MspI CCGG 3 cut(s) 167, 686, 762
MspR9I CCNGG 3 cut(s) 621, 687, 763
Mva1269I GAATGC 1 cut(s) 975
MvaI CCWGG 1 cut(s) 621
MwoI GCNNNNNNNGC 2 cut(s) 92, 722
NciI CCSGG 2 cut(s) 687, 763
NcoI CCATGG 1 cut(s) 981
NdeII GATC 5 cut(s) 136, 529, 616, 644, 697
NlaIII CATG 5 cut(s) 197, 281, 383, 985, 1042
NlaIV GGNNCC 4 cut(s) 575, 618, 626, 773
NmeAIII GCCGAG 1 cut(s) 755
NmuCI GTSAC 1 cut(s) 989
NsiI ATGCAT 1 cut(s) 6
NspI RCATGY 1 cut(s) 1042
PagI TCATGA 1 cut(s) 379
PaqCI CACCTGC 1 cut(s) 977
PciSI GCTCTTC 1 cut(s) 723
PcsI WCGNNNNNNNCGW 1 cut(s) 727
PctI GAATGC 1 cut(s) 975
PfeI GAWTC 5 cut(s) 115, 394, 482, 510, 998
PfoI TCCNGGA 1 cut(s) 761
PkrI GCNGC 1 cut(s) 521
PleI GAGTC 1 cut(s) 420
PpsI GAGTC 1 cut(s) 420
Psp6I CCWGG 1 cut(s) 619
PspGI CCWGG 1 cut(s) 619
PspN4I GGNNCC 4 cut(s) 575, 618, 626, 773
PstNI CAGNNNCTG 1 cut(s) 847
PsuI RGATCY 1 cut(s) 616
RsaI GTAC 3 cut(s) 214, 704, 1037
RsaNI GTAC 3 cut(s) 213, 703, 1036
RseI CAYNNNNRTG 2 cut(s) 276, 980
SapI GCTCTTC 1 cut(s) 723
SaqAI TTAA 5 cut(s) 60, 534, 660, 780, 1005
SatI GCNGC 1 cut(s) 520
Sau3AI GATC 5 cut(s) 136, 529, 616, 644, 697
ScaI AGTACT 1 cut(s) 214
SchI GAGTC 1 cut(s) 421
ScrFI CCNGG 3 cut(s) 621, 687, 763
SfcI CTRYAG 1 cut(s) 753
SmiMI CAYNNNNRTG 2 cut(s) 276, 980
SmlI CTYRAG 1 cut(s) 779
SmoI CTYRAG 1 cut(s) 779
Sse9I AATT 7 cut(s) 57, 98, 199, 360, 426, 661, 766
SsiI CCGC 2 cut(s) 9, 250
SspMI CTAG 3 cut(s) 516, 788, 968
StyD4I CCNGG 3 cut(s) 619, 685, 761
StyI CCWWGG 2 cut(s) 628, 981
TaaI ACNGT 2 cut(s) 34, 152
TaiI ACGT 1 cut(s) 1011
TaqI TCGA 2 cut(s) 82, 721
TasI AATT 7 cut(s) 57, 98, 199, 360, 426, 661, 766
TatI WGTACW 2 cut(s) 212, 1035
TfiI GAWTC 5 cut(s) 115, 394, 482, 510, 998
Tru1I TTAA 5 cut(s) 60, 534, 660, 780, 1005
Tru9I TTAA 5 cut(s) 60, 534, 660, 780, 1005
TscAI CASTG 2 cut(s) 242, 361
TseFI GTSAC 1 cut(s) 989
TseI GCWGC 1 cut(s) 519
Tsp45I GTSAC 1 cut(s) 989
TspDTI ATGAA 3 cut(s) 368, 467, 821
TspGWI ACGGA 2 cut(s) 690, 967
TspRI CASTG 2 cut(s) 242, 361
Vha464I CTTAAG 1 cut(s) 779
XapI RAATTY 1 cut(s) 199
XbaI TCTAGA 1 cut(s) 787
XceI RCATGY 1 cut(s) 1042
XspI CTAG 3 cut(s) 516, 788, 968
ZrmI AGTACT 1 cut(s) 214
Zsp2I ATGCAT 1 cut(s) 6
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.