SpoU rRNA Methylase family
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| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT4G38020 |
| fragaria_vesca | FvH4_1g19321 FvH4_1g19321 FvH4_1g19321 FvH4_1g19321 |
| malus_domestica | MD01G1041100.v1.1 |
| prunus_persica | Prupe.6G204900_v2.0.a1 Prupe.6G204900_v2.0.a1 Prupe.6G204900_v2.0.a1 |
| pyrus_communis | pycom01g06880 |
| rosa_chinensis | RchiOBHm_Chr6g0269301 |
| rosa_laevigata | RLG00000017832 |
| rosa_multiflora | Rmu_co8055466.1_g000001 |
| rosa_roxburghii | Rroxscaffold_2G00133020 |
| rosa_rugosa | Rorug02G0168800 Rorug02G0168900 |
| rosa_samantha | Rh2AG221100 Rh2BG231200 Rh2CG223500 Rh2DG227300 |
| rosa_wichuraiana | Rw2G017060 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccB1I | GGYRCC | 1 cut(s) | 684 |
| AciI | CCGC | 1 cut(s) | 292 |
| AgsI | TTSAA | 6 cut(s) | 110, 171, 298, 485, 647, 677 |
| AluBI | AGCT | 6 cut(s) | 49, 130, 199, 435, 454, 622 |
| AluI | AGCT | 6 cut(s) | 49, 130, 199, 435, 454, 622 |
| Alw21I | GWGCWC | 2 cut(s) | 437, 666 |
| Alw44I | GTGCAC | 1 cut(s) | 662 |
| ApaLI | GTGCAC | 1 cut(s) | 662 |
| AspS9I | GGNCC | 1 cut(s) | 589 |
| AsuC2I | CCSGG | 1 cut(s) | 689 |
| AsuHPI | GGTGA | 1 cut(s) | 745 |
| AvaII | GGWCC | 1 cut(s) | 589 |
| BaeGI | GKGCMC | 1 cut(s) | 666 |
| BanI | GGYRCC | 1 cut(s) | 684 |
| BanII | GRGCYC | 1 cut(s) | 437 |
| BauI | CACGAG | 1 cut(s) | 10 |
| BbsI | GAAGAC | 2 cut(s) | 117, 201 |
| Bbv12I | GWGCWC | 2 cut(s) | 437, 666 |
| BccI | CCATC | 5 cut(s) | 269, 349, 577, 590, 675 |
| BcnI | CCSGG | 1 cut(s) | 689 |
| BfmI | CTRYAG | 1 cut(s) | 553 |
| Bme1390I | CCNGG | 1 cut(s) | 689 |
| Bme18I | GGWCC | 1 cut(s) | 589 |
| BmgT120I | GGNCC | 1 cut(s) | 589 |
| BmiI | GGNNCC | 4 cut(s) | 390, 566, 686, 693 |
| BmrFI | CCNGG | 1 cut(s) | 689 |
| BmsI | GCATC | 1 cut(s) | 453 |
| BpiI | GAAGAC | 2 cut(s) | 117, 201 |
| BpmI | CTGGAG | 2 cut(s) | 25, 423 |
| BpuMI | CCSGG | 1 cut(s) | 689 |
| BsaWI | WCCGGW | 1 cut(s) | 373 |
| Bse1I | ACTGG | 1 cut(s) | 440 |
| Bse3DI | GCAATG | 4 cut(s) | 11, 332, 495, 717 |
| BseGI | GGATG | 2 cut(s) | 91, 468 |
| BseMI | GCAATG | 4 cut(s) | 11, 332, 495, 717 |
| BseMII | CTCAG | 4 cut(s) | 36, 110, 609, 614 |
| BseNI | ACTGG | 1 cut(s) | 440 |
| BseSI | GKGCMC | 1 cut(s) | 666 |
| BshNI | GGYRCC | 1 cut(s) | 684 |
| BsiHKAI | GWGCWC | 2 cut(s) | 437, 666 |
| BsiSI | CCGG | 2 cut(s) | 374, 688 |
| Bsp1286I | GDGCHC | 2 cut(s) | 437, 666 |
| BspACI | CCGC | 1 cut(s) | 292 |
| BspCNI | CTCAG | 4 cut(s) | 35, 109, 610, 615 |
| BspLI | GGNNCC | 4 cut(s) | 390, 566, 686, 693 |
| BspT107I | GGYRCC | 1 cut(s) | 684 |
| BsrDI | GCAATG | 4 cut(s) | 11, 332, 495, 717 |
| BsrI | ACTGG | 1 cut(s) | 440 |
| BssSI | CACGAG | 1 cut(s) | 10 |
| Bst2BI | CACGAG | 1 cut(s) | 10 |
| Bst4CI | ACNGT | 2 cut(s) | 349, 554 |
| BstDEI | CTNAG | 5 cut(s) | 22, 56, 96, 618, 623 |
| BstF5I | GGATG | 2 cut(s) | 91, 468 |
| BstMWI | GCNNNNNNNGC | 1 cut(s) | 136 |
| BstSCI | CCNGG | 1 cut(s) | 687 |
| BstSFI | CTRYAG | 1 cut(s) | 553 |
| BstSLI | GKGCMC | 1 cut(s) | 666 |
| BstV2I | GAAGAC | 2 cut(s) | 117, 201 |
| BstXI | CCANNNNNNTGG | 2 cut(s) | 230, 730 |
| BtsCI | GGATG | 2 cut(s) | 91, 468 |
| BtsI | GCAGTG | 1 cut(s) | 187 |
| BtsIMutI | CAGTG | 3 cut(s) | 30, 187, 447 |
| Cfr13I | GGNCC | 1 cut(s) | 589 |
| CviAII | CATG | 3 cut(s) | 146, 230, 272 |
| CviJI | RGCY | 9 cut(s) | 49, 130, 199, 435, 454, 494, 560, 622, 742 |
| CviKI_1 | RGCY | 9 cut(s) | 49, 130, 199, 435, 454, 494, 560, 622, 742 |
| DdeI | CTNAG | 5 cut(s) | 22, 56, 96, 618, 623 |
| Ecl136II | GAGCTC | 1 cut(s) | 435 |
| Eco24I | GRGCYC | 1 cut(s) | 437 |
| Eco32I | GATATC | 1 cut(s) | 526 |
| Eco47I | GGWCC | 1 cut(s) | 589 |
| Eco53kI | GAGCTC | 1 cut(s) | 435 |
| EcoICRI | GAGCTC | 1 cut(s) | 435 |
| EcoRV | GATATC | 1 cut(s) | 526 |
| EcoT38I | GRGCYC | 1 cut(s) | 437 |
| FaeI | CATG | 3 cut(s) | 149, 233, 275 |
| FatI | CATG | 3 cut(s) | 145, 229, 271 |
| FokI | GGATG | 2 cut(s) | 78, 475 |
| FriOI | GRGCYC | 1 cut(s) | 437 |
| GsuI | CTGGAG | 2 cut(s) | 25, 423 |
| HapII | CCGG | 2 cut(s) | 374, 688 |
| Hin1II | CATG | 3 cut(s) | 149, 233, 275 |
| HindIII | AAGCTT | 3 cut(s) | 128, 197, 452 |
| HinfI | GANTC | 1 cut(s) | 476 |
| HpaII | CCGG | 2 cut(s) | 374, 688 |
| HphI | GGTGA | 1 cut(s) | 745 |
| Hpy166II | GTNNAC | 4 cut(s) | 30, 277, 640, 664 |
| Hpy188I | TCNGA | 3 cut(s) | 99, 327, 523 |
| Hpy188III | TCNNGA | 2 cut(s) | 42, 392 |
| Hpy8I | GTNNAC | 4 cut(s) | 30, 277, 640, 664 |
| HpyAV | CCTTC | 1 cut(s) | 291 |
| HpyCH4III | ACNGT | 2 cut(s) | 349, 554 |
| HpyCH4V | TGCA | 7 cut(s) | 4, 9, 337, 427, 466, 664, 717 |
| HpyF10VI | GCNNNNNNNGC | 1 cut(s) | 136 |
| HpyF3I | CTNAG | 5 cut(s) | 22, 56, 96, 618, 623 |
| Hsp92II | CATG | 3 cut(s) | 149, 233, 275 |
| LweI | GCATC | 1 cut(s) | 453 |
| MboII | GAAGA | 3 cut(s) | 122, 201, 204 |
| MhlI | GDGCHC | 2 cut(s) | 437, 666 |
| MluCI | AATT | 5 cut(s) | 77, 298, 379, 609, 744 |
| MnlI | CCTC | 5 cut(s) | 54, 105, 144, 379, 538 |
| MslI | CAYNNNNRTG | 2 cut(s) | 23, 228 |
| MspI | CCGG | 2 cut(s) | 374, 688 |
| MspR9I | CCNGG | 1 cut(s) | 689 |
| MwoI | GCNNNNNNNGC | 1 cut(s) | 136 |
| NciI | CCSGG | 1 cut(s) | 689 |
| NlaIII | CATG | 3 cut(s) | 149, 233, 275 |
| NlaIV | GGNNCC | 4 cut(s) | 390, 566, 686, 693 |
| PfeI | GAWTC | 1 cut(s) | 476 |
| Psp124BI | GAGCTC | 1 cut(s) | 437 |
| PspN4I | GGNNCC | 4 cut(s) | 390, 566, 686, 693 |
| PspPI | GGNCC | 1 cut(s) | 589 |
| RseI | CAYNNNNRTG | 2 cut(s) | 23, 228 |
| SacI | GAGCTC | 1 cut(s) | 437 |
| Sau96I | GGNCC | 1 cut(s) | 589 |
| ScrFI | CCNGG | 1 cut(s) | 689 |
| SduI | GDGCHC | 2 cut(s) | 437, 666 |
| SfaNI | GCATC | 1 cut(s) | 453 |
| SfcI | CTRYAG | 1 cut(s) | 553 |
| SinI | GGWCC | 1 cut(s) | 589 |
| SmiMI | CAYNNNNRTG | 2 cut(s) | 23, 228 |
| Sse9I | AATT | 5 cut(s) | 77, 298, 379, 609, 744 |
| SsiI | CCGC | 1 cut(s) | 292 |
| SstI | GAGCTC | 1 cut(s) | 437 |
| StyD4I | CCNGG | 1 cut(s) | 687 |
| TaaI | ACNGT | 2 cut(s) | 349, 554 |
| TaqI | TCGA | 1 cut(s) | 580 |
| TasI | AATT | 5 cut(s) | 77, 298, 379, 609, 744 |
| TfiI | GAWTC | 1 cut(s) | 476 |
| TscAI | CASTG | 3 cut(s) | 30, 194, 447 |
| TspDTI | ATGAA | 4 cut(s) | 260, 461, 552, 602 |
| TspRI | CASTG | 3 cut(s) | 30, 194, 447 |
| VneI | GTGCAC | 1 cut(s) | 662 |
| VpaK11BI | GGWCC | 1 cut(s) | 589 |