Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp06

Orthogroup ID

OG0010487

Physical Location & Seq

Genomic Coordinates Reverse (-)

21296717 .. 21299815

Gene Structure 3099 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.6G204900.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1032 bp

ATGCAATGCTCTAACATCATCTCAGCGTCAACCATTGACCCCAGAAAGCGCAAAGTTTGGGACTTGCACTCAGAGTTATCAGTTGGTCCAAGCCAAATCCATACCCAGAGGCAGAGCAACTTTGAAGACTATGATGTAAAGCTTCCTCTGCCTTCCCATGTCAATTCCATAACAAGCACCTCTAACCCATTCGTGAAACACTGCCACAAGCTTCGACAGAGTTCATCTTATCGCCACAGTCATGGTTCAGCTCTCGTTGTGGGTGCTACGCCTATCAGGGAAATATACAGGTTCCAAAGGTCATCGCAAGAGAAAACTGTTATAATAGATTGCTTGCTTCTACTTGAAAAAGCTGAGGTCCCTGAGTGGATTGATGGTTTCTCTGTTCGTATTGTGGAAGTGAGCTCTGTTGTGATGAAAAAACTTTCGGGGATGCAATCAACTGAATCTATTGAAGCAATTGCCCTAATGAGAATGCCTACCAGTTTTTCAGATATAGATTCTGAAGAAAAGGAGGTAAACTGTAAGACATGGTTTCCCTCACTCCATCGAGTTCTAGTCCTTGATGGCGTCCAGGATCCGGGTAACCTTGGTACGCTGCTCAGATCAGCTATGGCTTTTGGATGGAATGGTGCTTTTCTTCTTCCTGGATGCTGTGATCCATTCAATGAGAAGGCACTTAGAGCTAGCCGAGGAGCCTCGTTTCAGCTCCGTATTGTTTCTGGTACCTGGAATCATCTCGAATCCCTGAAAAATGAATTCCAAATAAAGATGCTAGCTGGCCATCCGGGGACCGATGAAAAACTGAAACCAGTGTCTCACCTTTCTCAAAAGCTTGCAGATTCTTTTGCAGATGTGCCGCTGAGCTTGGTTTTGGGCAGTGAAGGAAGTGGGCTGTCTGAGAAATCTCGACGGCTATGTGAGCTTGTAAGCATTCCAATGGCAGGAGAGTTTGAGTCACTCAATGTTTCAGTTGCAGGTGGGATTTTCTTGTATGTGTTACAGCCTAAAAACCATAAATCTTTAATGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

SpoU_methylase

Protein Analysis

344

Amino Acids

38.02

Weight (kDa)

7.67

Isoelectric Point (pI)

44.88

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0010487)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G38020
fragaria_vesca	FvH4_1g19321 FvH4_1g19321 FvH4_1g19321 FvH4_1g19321
malus_domestica	MD01G1041100.v1.1
prunus_persica	Prupe.6G204900_v2.0.a1 Prupe.6G204900_v2.0.a1 Prupe.6G204900_v2.0.a1
pyrus_communis	pycom01g06880
rosa_chinensis	RchiOBHm_Chr6g0269301
rosa_laevigata	RLG00000017832
rosa_multiflora	Rmu_co8055466.1_g000001
rosa_roxburghii	Rroxscaffold_2G00133020
rosa_rugosa	Rorug02G0168800 Rorug02G0168900
rosa_samantha	Rh2AG221100 Rh2BG231200 Rh2CG223500 Rh2DG227300
rosa_wichuraiana	Rw2G017060

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	323
AarI	CACCTGC	1 cut(s)	968
Acc36I	ACCTGC	1 cut(s)	968
Acc65I	GGTACC	1 cut(s)	725
AccB1I	GGYRCC	1 cut(s)	725
AciI	CCGC	1 cut(s)	860
AclWI	GGATC	3 cut(s)	572, 585, 653
AcoI	YGGCCR	1 cut(s)	781
AcsI	RAATTY	1 cut(s)	758
AcuI	CTGAAG	1 cut(s)	525
AcyI	GRCGYC	1 cut(s)	570
AfaI	GTAC	2 cut(s)	595, 727
AfiI	CCNNNNNNNGG	2 cut(s)	580, 944
AgsI	TTSAA	4 cut(s)	125, 347, 455, 667
AjnI	CCWGG	3 cut(s)	573, 646, 728
Alw21I	GWGCWC	1 cut(s)	407
Alw26I	GTCTC	1 cut(s)	822
AlwI	GGATC	3 cut(s)	572, 585, 653
AoxI	GGCC	1 cut(s)	781
ApeKI	GCWGC	1 cut(s)	598
ApoI	RAATTY	1 cut(s)	758
Asp718I	GGTACC	1 cut(s)	725
AspLEI	GCGC	1 cut(s)	51
AspS9I	GGNCC	3 cut(s)	86, 358, 792
AsuC2I	CCSGG	2 cut(s)	582, 789
AsuHPI	GGTGA	1 cut(s)	812
AsuNHI	GCTAGC	2 cut(s)	686, 775
AvaII	GGWCC	3 cut(s)	86, 358, 792
BalI	TGGCCA	1 cut(s)	783
BamHI	GGATCC	1 cut(s)	577
BanI	GGYRCC	1 cut(s)	725
BanII	GRGCYC	1 cut(s)	407
BbsI	GAAGAC	1 cut(s)	132
Bbv12I	GWGCWC	1 cut(s)	407
BbvCI	CCTCAGC	1 cut(s)	354
BbvI	GCAGC	1 cut(s)	585
BccI	CCATC	5 cut(s)	368, 555, 560, 618, 792
BceAI	ACGGC	1 cut(s)	929
BciT130I	CCWGG	3 cut(s)	575, 648, 730
BcnI	CCSGG	2 cut(s)	582, 789
BcoDI	GTCTC	1 cut(s)	822
BfaI	CTAG	3 cut(s)	557, 687, 776
BfuAI	ACCTGC	1 cut(s)	968
BisI	GCNGC	2 cut(s)	599, 860
BlpI	GCTNAGC	1 cut(s)	863
BlsI	GCNGC	2 cut(s)	600, 861
Bme1390I	CCNGG	5 cut(s)	575, 582, 648, 730, 789
Bme18I	GGWCC	3 cut(s)	86, 358, 792
BmgT120I	GGNCC	3 cut(s)	86, 358, 792
BmiI	GGNNCC	6 cut(s)	293, 360, 579, 697, 727, 793
BmrFI	CCNGG	5 cut(s)	575, 582, 648, 730, 789
BmsI	GCATC	3 cut(s)	423, 641, 762
BmtI	GCTAGC	2 cut(s)	690, 779
BpiI	GAAGAC	1 cut(s)	132
Bpu10I	CCTNAGC	1 cut(s)	354
Bpu1102I	GCTNAGC	1 cut(s)	863
BpuMI	CCSGG	2 cut(s)	582, 789
BsaHI	GRCGYC	1 cut(s)	570
BsaJI	CCNNGG	3 cut(s)	589, 691, 788
Bsc4I	CCNNNNNNNGG	2 cut(s)	580, 944
Bse1I	ACTGG	2 cut(s)	483, 812
Bse3DI	GCAATG	1 cut(s)	11
BseBI	CCWGG	3 cut(s)	575, 648, 730
BseDI	CCNNGG	3 cut(s)	589, 691, 788
BseGI	GGATG	4 cut(s)	438, 629, 656, 784
BseLI	CCNNNNNNNGG	2 cut(s)	580, 944
BseMI	GCAATG	1 cut(s)	11
BseMII	CTCAG	7 cut(s)	36, 84, 345, 354, 616, 854, 891
BseNI	ACTGG	2 cut(s)	483, 812
BseRI	GAGGAG	1 cut(s)	708
BseXI	GCAGC	1 cut(s)	585
BshFI	GGCC	1 cut(s)	783
BshNI	GGYRCC	1 cut(s)	725
BsiHKAI	GWGCWC	1 cut(s)	407
BsiSI	CCGG	2 cut(s)	581, 788
BslFI	GGGAC	3 cut(s)	74, 344, 805
BslI	CCNNNNNNNGG	2 cut(s)	580, 944
BsmAI	GTCTC	1 cut(s)	822
BsmFI	GGGAC	3 cut(s)	74, 344, 805
BsmI	GAATGC	2 cut(s)	480, 933
BsnI	GGCC	1 cut(s)	783
Bsp1286I	GDGCHC	1 cut(s)	407
Bsp143I	GATC	3 cut(s)	577, 605, 658
Bsp1720I	GCTNAGC	1 cut(s)	863
BspACI	CCGC	1 cut(s)	860
BspANI	GGCC	1 cut(s)	783
BspCNI	CTCAG	7 cut(s)	35, 83, 346, 355, 615, 855, 892
BspLI	GGNNCC	6 cut(s)	293, 360, 579, 697, 727, 793
BspMI	ACCTGC	1 cut(s)	968
BspOI	GCTAGC	2 cut(s)	690, 779
BspPI	GGATC	3 cut(s)	572, 585, 653
BspT107I	GGYRCC	1 cut(s)	725
BsrDI	GCAATG	1 cut(s)	11
BsrI	ACTGG	2 cut(s)	483, 812
BssECI	CCNNGG	3 cut(s)	589, 691, 788
BssMI	GATC	3 cut(s)	577, 605, 658
BssNI	GRCGYC	1 cut(s)	570
BssT1I	CCWWGG	1 cut(s)	589
Bst2UI	CCWGG	3 cut(s)	575, 648, 730
Bst4CI	ACNGT	3 cut(s)	239, 319, 524
BstACI	GRCGYC	1 cut(s)	570
BstC8I	GCNNGC	5 cut(s)	335, 688, 777, 781, 837
BstDEI	CTNAG	8 cut(s)	22, 70, 354, 363, 602, 680, 863, 900
BstEII	GGTNACC	1 cut(s)	584
BstF5I	GGATG	4 cut(s)	438, 629, 656, 784
BstHHI	GCGC	1 cut(s)	51
BstKTI	GATC	3 cut(s)	580, 608, 661
BstMAI	GTCTC	1 cut(s)	822
BstMBI	GATC	3 cut(s)	577, 605, 658
BstMWI	GCNNNNNNNGC	3 cut(s)	148, 683, 922
BstNI	CCWGG	3 cut(s)	575, 648, 730
BstPI	GGTNACC	1 cut(s)	584
BstSCI	CCNGG	5 cut(s)	573, 580, 646, 728, 787
BstV1I	GCAGC	1 cut(s)	585
BstV2I	GAAGAC	1 cut(s)	132
BstX2I	RGATCY	1 cut(s)	577
BstXI	CCANNNNNNTGG	1 cut(s)	242
BstYI	RGATCY	1 cut(s)	577
BsuRI	GGCC	1 cut(s)	783
BtgZI	GCGATG	1 cut(s)	288
BtsCI	GGATG	4 cut(s)	438, 629, 656, 784
BtsI	GCAGTG	2 cut(s)	199, 886
BtsIMutI	CAGTG	3 cut(s)	199, 819, 886
BveI	ACCTGC	1 cut(s)	968
Cac8I	GCNNGC	5 cut(s)	335, 688, 777, 781, 837
CfoI	GCGC	1 cut(s)	51
Cfr13I	GGNCC	3 cut(s)	86, 358, 792
CseI	GACGC	2 cut(s)	15, 559
Csp6I	GTAC	2 cut(s)	594, 726
CviAII	CATG	3 cut(s)	158, 242, 531
CviQI	GTAC	2 cut(s)	594, 726
DdeI	CTNAG	8 cut(s)	22, 70, 354, 363, 602, 680, 863, 900
DpnI	GATC	3 cut(s)	579, 607, 660
DpnII	GATC	3 cut(s)	577, 605, 658
EaeI	YGGCCR	1 cut(s)	781
Ecl136II	GAGCTC	1 cut(s)	405
Eco130I	CCWWGG	1 cut(s)	589
Eco24I	GRGCYC	1 cut(s)	407
Eco47I	GGWCC	3 cut(s)	86, 358, 792
Eco53kI	GAGCTC	1 cut(s)	405
Eco57I	CTGAAG	1 cut(s)	525
Eco91I	GGTNACC	1 cut(s)	584
EcoICRI	GAGCTC	1 cut(s)	405
EcoO109I	RGGNCCY	1 cut(s)	358
EcoO65I	GGTNACC	1 cut(s)	584
EcoRI	GAATTC	1 cut(s)	758
EcoRII	CCWGG	3 cut(s)	573, 646, 728
EcoT14I	CCWWGG	1 cut(s)	589
EcoT38I	GRGCYC	1 cut(s)	407
ErhI	CCWWGG	1 cut(s)	589
FaeI	CATG	3 cut(s)	161, 245, 534
FaqI	GGGAC	3 cut(s)	74, 344, 805
FatI	CATG	3 cut(s)	157, 241, 530
Fnu4HI	GCNGC	2 cut(s)	599, 860
FokI	GGATG	4 cut(s)	445, 636, 663, 771
FriOI	GRGCYC	1 cut(s)	407
Fsp4HI	GCNGC	2 cut(s)	599, 860
FspBI	CTAG	3 cut(s)	557, 687, 776
GlaI	GCGC	1 cut(s)	50
GluI	GCNGC	2 cut(s)	599, 860
HaeIII	GGCC	1 cut(s)	783
HapII	CCGG	2 cut(s)	581, 788
HgaI	GACGC	2 cut(s)	15, 559
HhaI	GCGC	1 cut(s)	51
Hin1I	GRCGYC	1 cut(s)	570
Hin1II	CATG	3 cut(s)	161, 245, 534
Hin6I	GCGC	1 cut(s)	49
HinP1I	GCGC	1 cut(s)	49
HincII	GTYRAC	1 cut(s)	30
HindII	GTYRAC	1 cut(s)	30
HindIII	AAGCTT	3 cut(s)	140, 209, 833
HinfI	GANTC	6 cut(s)	446, 500, 733, 743, 842, 956
HpaII	CCGG	2 cut(s)	581, 788
HphI	GGTGA	1 cut(s)	812
Hpy166II	GTNNAC	2 cut(s)	30, 520
Hpy188I	TCNGA	5 cut(s)	73, 493, 505, 605, 901
Hpy188III	TCNNGA	3 cut(s)	193, 740, 909
Hpy8I	GTNNAC	2 cut(s)	30, 520
Hpy99I	CGWCG	1 cut(s)	915
HpyAV	CCTTC	3 cut(s)	162, 667, 878
HpyCH4III	ACNGT	3 cut(s)	239, 319, 524
HpyCH4V	TGCA	6 cut(s)	4, 67, 436, 839, 851, 977
HpyF10VI	GCNNNNNNNGC	3 cut(s)	148, 683, 922
HpyF3I	CTNAG	8 cut(s)	22, 70, 354, 363, 602, 680, 863, 900
Hsp92I	GRCGYC	1 cut(s)	570
Hsp92II	CATG	3 cut(s)	161, 245, 534
HspAI	GCGC	1 cut(s)	49
KpnI	GGTACC	1 cut(s)	729
Kzo9I	GATC	3 cut(s)	577, 605, 658
LmnI	GCTCC	2 cut(s)	695, 714
Lsp1109I	GCAGC	1 cut(s)	585
LweI	GCATC	3 cut(s)	423, 641, 762
MaeI	CTAG	3 cut(s)	557, 687, 776
MaeIII	GTNAC	3 cut(s)	584, 957, 999
MalI	GATC	3 cut(s)	579, 607, 660
MboI	GATC	3 cut(s)	577, 605, 658
MboII	GAAGA	4 cut(s)	137, 518, 632, 635
MfeI	CAATTG	1 cut(s)	459
MflI	RGATCY	1 cut(s)	577
MhlI	GDGCHC	1 cut(s)	407
MlsI	TGGCCA	1 cut(s)	783
MluCI	AATT	3 cut(s)	163, 459, 758
MluNI	TGGCCA	1 cut(s)	783
MlyI	GAGTC	1 cut(s)	965
MnlI	CCTC	8 cut(s)	102, 156, 190, 349, 508, 550, 686, 709
Mox20I	TGGCCA	1 cut(s)	783
MscI	TGGCCA	1 cut(s)	783
MseI	TTAA	1 cut(s)	1025
MslI	CAYNNNNRTG	2 cut(s)	240, 938
Msp20I	TGGCCA	1 cut(s)	783
MspA1I	CMGCKG	1 cut(s)	862
MspI	CCGG	2 cut(s)	581, 788
MspR9I	CCNGG	5 cut(s)	575, 582, 648, 730, 789
MunI	CAATTG	1 cut(s)	459
Mva1269I	GAATGC	2 cut(s)	480, 933
MvaI	CCWGG	3 cut(s)	575, 648, 730
MwoI	GCNNNNNNNGC	3 cut(s)	148, 683, 922
NciI	CCSGG	2 cut(s)	582, 789
NdeII	GATC	3 cut(s)	577, 605, 658
NheI	GCTAGC	2 cut(s)	686, 775
NlaIII	CATG	3 cut(s)	161, 245, 534
NlaIV	GGNNCC	6 cut(s)	293, 360, 579, 697, 727, 793
NmeAIII	GCCGAG	1 cut(s)	716
NmuCI	GTSAC	1 cut(s)	957
PaqCI	CACCTGC	1 cut(s)	968
PctI	GAATGC	2 cut(s)	480, 933
PfeI	GAWTC	5 cut(s)	446, 500, 733, 743, 842
PfoI	TCCNGGA	2 cut(s)	573, 646
PkrI	GCNGC	2 cut(s)	600, 861
PleI	GAGTC	1 cut(s)	964
PpsI	GAGTC	1 cut(s)	964
PpuMI	RGGWCCY	1 cut(s)	358
PsiI	TTATAA	1 cut(s)	323
Psp124BI	GAGCTC	1 cut(s)	407
Psp5II	RGGWCCY	1 cut(s)	358
Psp6I	CCWGG	3 cut(s)	573, 646, 728
PspEI	GGTNACC	1 cut(s)	584
PspGI	CCWGG	3 cut(s)	573, 646, 728
PspN4I	GGNNCC	6 cut(s)	293, 360, 579, 697, 727, 793
PspPI	GGNCC	3 cut(s)	86, 358, 792
PspPPI	RGGWCCY	1 cut(s)	358
PsuI	RGATCY	1 cut(s)	577
RsaI	GTAC	2 cut(s)	595, 727
RsaNI	GTAC	2 cut(s)	594, 726
RseI	CAYNNNNRTG	2 cut(s)	240, 938
SacI	GAGCTC	1 cut(s)	407
SaqAI	TTAA	1 cut(s)	1025
SatI	GCNGC	2 cut(s)	599, 860
Sau3AI	GATC	3 cut(s)	577, 605, 658
Sau96I	GGNCC	3 cut(s)	86, 358, 792
SchI	GAGTC	1 cut(s)	965
ScrFI	CCNGG	5 cut(s)	575, 582, 648, 730, 789
SduI	GDGCHC	1 cut(s)	407
SfaNI	GCATC	3 cut(s)	423, 641, 762
SinI	GGWCC	3 cut(s)	86, 358, 792
SmiMI	CAYNNNNRTG	2 cut(s)	240, 938
Sse9I	AATT	3 cut(s)	163, 459, 758
SsiI	CCGC	1 cut(s)	860
SspMI	CTAG	3 cut(s)	557, 687, 776
SstI	GAGCTC	1 cut(s)	407
StyD4I	CCNGG	5 cut(s)	573, 580, 646, 728, 787
StyI	CCWWGG	1 cut(s)	589
TaaI	ACNGT	3 cut(s)	239, 319, 524
TaqI	TCGA	4 cut(s)	214, 550, 741, 910
TaqII	GACCGA	1 cut(s)	809
TasI	AATT	3 cut(s)	163, 459, 758
TauI	GCSGC	1 cut(s)	862
TfiI	GAWTC	5 cut(s)	446, 500, 733, 743, 842
Tru1I	TTAA	1 cut(s)	1025
Tru9I	TTAA	1 cut(s)	1025
TscAI	CASTG	3 cut(s)	206, 819, 886
TseFI	GTSAC	1 cut(s)	957
TseI	GCWGC	1 cut(s)	598
Tsp45I	GTSAC	1 cut(s)	957
TspDTI	ATGAA	4 cut(s)	213, 431, 771, 813
TspGWI	ACGGA	1 cut(s)	701
TspRI	CASTG	3 cut(s)	206, 819, 886
VpaK11BI	GGWCC	3 cut(s)	86, 358, 792
XapI	RAATTY	1 cut(s)	758
XspI	CTAG	3 cut(s)	557, 687, 776

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.