Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr1

Orthogroup ID

OG0010487

Physical Location & Seq

Genomic Coordinates Forward (+)

7415279 .. 7418794

Gene Structure 3516 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom01g06880.4

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1023 bp

ATGCAATGCTCAAACATAATCTCAGTGGCAGCCATTCCCCCCAGAAAGCTCAAAGTTTGGGACTCGTACTCACAGTTATCAATTGATCAAAGACAAACCCTTACTCCGACTAACTTTTCAGACACTGACTTCAAGCTTCCACTGCCGTCCCACGTTACCTCCATAACCAGCACCTCAAACCCATTCGTCAAACACTGCCACAAGCTCCGCCACAGTTCATCTTATCGCCACAGCCATGGTTCAGCTCTCGTTGTAGGTGCCACACCTATCAGGGAAATATGCAGGTTTCAAAAGTCATCGCAAGAGAAAACTGTTATAATAGATTGTTTGCTTCTACTTGATAAAGCTGAGGTCCCTGAATGGATTAATGAATTCTCTCTTCGTATTGTGCAAGTGAGTTCTGTCGTGATGAAAAAACTTTCAGGGATGCAATCAACTGAATCCATTGAAGCAATTGCTCTAATGAGAATTCCTACTAGTTTCTCAGACATAGATGCTGAACAAAAGGAGGTAAACTGTAAGACGTGGTTCCCATCTCCCCATCGAGTTGTAGTCCTTGATGGTGTCCAGGATCCGGGTAACCTTGGTACGCTGCTCAGATCAGCTATGGCCTTTGGATGGAATGGTGCTTTTCTACTTCCTGGATGTTGTGATCCATTCAATGAGAAGGCACTTCGAGCCAGCCGAGGAGCCTCATTTCAGCTCCCTATTGTTTCTGGTACATGGAATCATCTTCAATCCTTGAAAAACGAATTCCAACTAAAGCTGCTAGCTGGCCATCCGGGAACTGAAGAAAAATCGAAGCCAGTGTCGCACCTTTCTCAAAAGCTTGCAGATTCATTCGCAAATATGCCAGTGAGCTTGATTTTGGGCAGTGAAGGACGTGGGCTGTCTGAGAAATCTCGTCGGCTCTGTGAGCTTGTAAGCATTCCAATGGCAGGGGAATTTGAGTCGCTCAATGTTTCAGTTGCCGGCGGAATTTTCTTGTATGTGTTACAGCCTAAAAACCATACAACTTTGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

SpoU_methylase

Protein Analysis

341

Amino Acids

37.5

Weight (kDa)

8.74

Isoelectric Point (pI)

39.55

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0010487)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G38020
fragaria_vesca	FvH4_1g19321 FvH4_1g19321 FvH4_1g19321 FvH4_1g19321
malus_domestica	MD01G1041100.v1.1
prunus_persica	Prupe.6G204900_v2.0.a1 Prupe.6G204900_v2.0.a1 Prupe.6G204900_v2.0.a1
pyrus_communis	pycom01g06880
rosa_chinensis	RchiOBHm_Chr6g0269301
rosa_laevigata	RLG00000017832
rosa_multiflora	Rmu_co8055466.1_g000001
rosa_roxburghii	Rroxscaffold_2G00133020
rosa_rugosa	Rorug02G0168800 Rorug02G0168900
rosa_samantha	Rh2AG221100 Rh2BG231200 Rh2CG223500 Rh2DG227300
rosa_wichuraiana	Rw2G017060

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	317
Acc36I	ACCTGC	1 cut(s)	273
AccB1I	GGYRCC	1 cut(s)	257
AciI	CCGC	2 cut(s)	208, 975
AclWI	GGATC	3 cut(s)	566, 579, 647
AcoI	YGGCCR	1 cut(s)	775
AcsI	RAATTY	5 cut(s)	371, 468, 752, 944, 978
AcuI	CTGAAG	1 cut(s)	810
AfaI	GTAC	3 cut(s)	68, 589, 721
AfiI	CCNNNNNNNGG	3 cut(s)	574, 618, 938
AgsI	TTSAA	6 cut(s)	133, 290, 449, 661, 737, 745
AhlI	ACTAGT	1 cut(s)	476
AjiI	CACGTC	2 cut(s)	525, 884
AjnI	CCWGG	2 cut(s)	567, 640
AlwI	GGATC	3 cut(s)	566, 579, 647
AlwNI	CAGNNNCTG	1 cut(s)	125
AoxI	GGCC	2 cut(s)	609, 775
ApeKI	GCWGC	3 cut(s)	29, 592, 766
ApoI	RAATTY	5 cut(s)	371, 468, 752, 944, 978
ArsI	GACNNNNNNTTYG	2 cut(s)	794, 826
AseI	ATTAAT	1 cut(s)	366
AspS9I	GGNCC	1 cut(s)	352
AsuC2I	CCSGG	2 cut(s)	576, 783
AsuNHI	GCTAGC	1 cut(s)	769
AvaII	GGWCC	1 cut(s)	352
BalI	TGGCCA	1 cut(s)	777
BamHI	GGATCC	1 cut(s)	571
BanI	GGYRCC	1 cut(s)	257
BbvCI	CCTCAGC	1 cut(s)	348
BbvI	GCAGC	3 cut(s)	41, 579, 753
BccI	CCATC	5 cut(s)	541, 549, 554, 612, 786
BceAI	ACGGC	1 cut(s)	130
BciT130I	CCWGG	2 cut(s)	569, 642
BclI	TGATCA	1 cut(s)	85
BcnI	CCSGG	2 cut(s)	576, 783
BcuI	ACTAGT	1 cut(s)	476
BfaI	CTAG	2 cut(s)	477, 770
BfuAI	ACCTGC	1 cut(s)	273
BisI	GCNGC	3 cut(s)	30, 593, 767
BlsI	GCNGC	3 cut(s)	31, 594, 768
Bme1390I	CCNGG	4 cut(s)	569, 576, 642, 783
Bme18I	GGWCC	1 cut(s)	352
BmgBI	CACGTC	2 cut(s)	525, 884
BmgT120I	GGNCC	1 cut(s)	352
BmiI	GGNNCC	5 cut(s)	259, 354, 530, 573, 691
BmrFI	CCNGG	4 cut(s)	569, 576, 642, 783
BmsI	GCATC	2 cut(s)	417, 484
BmtI	GCTAGC	1 cut(s)	773
Bpu10I	CCTNAGC	1 cut(s)	348
BpuMI	CCSGG	2 cut(s)	576, 783
BsaJI	CCNNGG	3 cut(s)	235, 583, 685
BsaXI	ACNNNNNCTCC	4 cut(s)	88, 118, 143, 173
Bsc4I	CCNNNNNNNGG	3 cut(s)	574, 618, 938
Bse118I	RCCGGY	1 cut(s)	971
Bse1I	ACTGG	2 cut(s)	806, 854
Bse3DI	GCAATG	1 cut(s)	11
BseBI	CCWGG	2 cut(s)	569, 642
BseDI	CCNNGG	3 cut(s)	235, 583, 685
BseGI	GGATG	4 cut(s)	432, 623, 650, 778
BseLI	CCNNNNNNNGG	3 cut(s)	574, 618, 938
BseMI	GCAATG	1 cut(s)	11
BseMII	CTCAG	5 cut(s)	36, 339, 498, 610, 885
BseNI	ACTGG	2 cut(s)	806, 854
BseRI	GAGGAG	1 cut(s)	702
BseXI	GCAGC	3 cut(s)	41, 579, 753
BshFI	GGCC	2 cut(s)	611, 777
BshNI	GGYRCC	1 cut(s)	257
BsiSI	CCGG	3 cut(s)	575, 782, 972
BslFI	GGGAC	3 cut(s)	74, 133, 338
BslI	CCNNNNNNNGG	3 cut(s)	574, 618, 938
BsmFI	GGGAC	3 cut(s)	74, 133, 338
BsmI	GAATGC	1 cut(s)	927
BsnI	GGCC	2 cut(s)	611, 777
Bsp143I	GATC	4 cut(s)	85, 571, 599, 652
Bsp19I	CCATGG	1 cut(s)	235
BspACI	CCGC	2 cut(s)	208, 975
BspANI	GGCC	2 cut(s)	611, 777
BspCNI	CTCAG	5 cut(s)	35, 340, 497, 609, 886
BspLI	GGNNCC	5 cut(s)	259, 354, 530, 573, 691
BspMI	ACCTGC	1 cut(s)	273
BspOI	GCTAGC	1 cut(s)	773
BspPI	GGATC	3 cut(s)	566, 579, 647
BspT107I	GGYRCC	1 cut(s)	257
BsrDI	GCAATG	1 cut(s)	11
BsrFI	RCCGGY	1 cut(s)	971
BsrI	ACTGG	2 cut(s)	806, 854
BssAI	RCCGGY	1 cut(s)	971
BssECI	CCNNGG	3 cut(s)	235, 583, 685
BssMI	GATC	4 cut(s)	85, 571, 599, 652
BssT1I	CCWWGG	2 cut(s)	235, 583
Bst2UI	CCWGG	2 cut(s)	569, 642
Bst4CI	ACNGT	4 cut(s)	75, 215, 313, 518
Bst6I	CTCTTC	1 cut(s)	384
BstC8I	GCNNGC	5 cut(s)	682, 771, 775, 831, 973
BstDEI	CTNAG	5 cut(s)	22, 348, 484, 596, 894
BstDSI	CCRYGG	1 cut(s)	235
BstEII	GGTNACC	1 cut(s)	578
BstF5I	GGATG	4 cut(s)	432, 623, 650, 778
BstKTI	GATC	4 cut(s)	88, 574, 602, 655
BstMBI	GATC	4 cut(s)	85, 571, 599, 652
BstMWI	GCNNNNNNNGC	4 cut(s)	142, 677, 811, 916
BstNI	CCWGG	2 cut(s)	569, 642
BstPI	GGTNACC	1 cut(s)	578
BstSCI	CCNGG	4 cut(s)	567, 574, 640, 781
BstV1I	GCAGC	3 cut(s)	41, 579, 753
BstX2I	RGATCY	1 cut(s)	571
BstXI	CCANNNNNNTGG	1 cut(s)	236
BstYI	RGATCY	1 cut(s)	571
BsuRI	GGCC	2 cut(s)	611, 777
BtgI	CCRYGG	1 cut(s)	235
BtgZI	GCGATG	1 cut(s)	282
BtrI	CACGTC	2 cut(s)	525, 884
BtsCI	GGATG	4 cut(s)	432, 623, 650, 778
BtsI	GCAGTG	3 cut(s)	140, 193, 880
BtsIMutI	CAGTG	7 cut(s)	30, 123, 140, 193, 813, 861, 880
BveI	ACCTGC	1 cut(s)	273
Cac8I	GCNNGC	5 cut(s)	682, 771, 775, 831, 973
CaiI	CAGNNNCTG	1 cut(s)	125
Cfr10I	RCCGGY	1 cut(s)	971
Cfr13I	GGNCC	1 cut(s)	352
Csp6I	GTAC	3 cut(s)	67, 588, 720
CviAII	CATG	2 cut(s)	236, 723
CviQI	GTAC	3 cut(s)	67, 588, 720
DdeI	CTNAG	5 cut(s)	22, 348, 484, 596, 894
DpnI	GATC	4 cut(s)	87, 573, 601, 654
DpnII	GATC	4 cut(s)	85, 571, 599, 652
EaeI	YGGCCR	1 cut(s)	775
Eam1104I	CTCTTC	1 cut(s)	384
EarI	CTCTTC	1 cut(s)	384
EciI	GGCGGA	2 cut(s)	197, 990
Eco130I	CCWWGG	2 cut(s)	235, 583
Eco47I	GGWCC	1 cut(s)	352
Eco57I	CTGAAG	1 cut(s)	810
Eco91I	GGTNACC	1 cut(s)	578
EcoO109I	RGGNCCY	1 cut(s)	352
EcoO65I	GGTNACC	1 cut(s)	578
EcoRI	GAATTC	3 cut(s)	371, 468, 752
EcoRII	CCWGG	2 cut(s)	567, 640
EcoT14I	CCWWGG	2 cut(s)	235, 583
ErhI	CCWWGG	2 cut(s)	235, 583
FaeI	CATG	2 cut(s)	239, 726
FaqI	GGGAC	3 cut(s)	74, 133, 338
FatI	CATG	2 cut(s)	235, 722
FbaI	TGATCA	1 cut(s)	85
Fnu4HI	GCNGC	3 cut(s)	30, 593, 767
FokI	GGATG	4 cut(s)	439, 630, 657, 765
Fsp4HI	GCNGC	3 cut(s)	30, 593, 767
FspBI	CTAG	2 cut(s)	477, 770
GluI	GCNGC	3 cut(s)	30, 593, 767
HaeIII	GGCC	2 cut(s)	611, 777
HapII	CCGG	3 cut(s)	575, 782, 972
Hin1II	CATG	2 cut(s)	239, 726
HindIII	AAGCTT	2 cut(s)	134, 827
HinfI	GANTC	5 cut(s)	62, 440, 727, 836, 950
HpaII	CCGG	3 cut(s)	575, 782, 972
Hpy166II	GTNNAC	1 cut(s)	514
Hpy188I	TCNGA	5 cut(s)	108, 121, 487, 599, 895
Hpy188III	TCNNGA	1 cut(s)	406
Hpy8I	GTNNAC	1 cut(s)	514
Hpy99I	CGWCG	1 cut(s)	909
HpyAV	CCTTC	2 cut(s)	661, 872
HpyCH4III	ACNGT	4 cut(s)	75, 215, 313, 518
HpyCH4IV	ACGT	3 cut(s)	153, 524, 883
HpyCH4V	TGCA	5 cut(s)	4, 282, 391, 430, 833
HpyF10VI	GCNNNNNNNGC	4 cut(s)	142, 677, 811, 916
HpyF3I	CTNAG	5 cut(s)	22, 348, 484, 596, 894
HpySE526I	ACGT	3 cut(s)	153, 524, 883
Hsp92II	CATG	2 cut(s)	239, 726
KroI	GCCGGC	1 cut(s)	971
KroNI	GCCGGC	1 cut(s)	973
Ksp22I	TGATCA	1 cut(s)	85
Kzo9I	GATC	4 cut(s)	85, 571, 599, 652
LmnI	GCTCC	3 cut(s)	210, 689, 708
Lsp1109I	GCAGC	3 cut(s)	41, 579, 753
LweI	GCATC	2 cut(s)	417, 484
MaeI	CTAG	2 cut(s)	477, 770
MaeII	ACGT	3 cut(s)	153, 524, 883
MaeIII	GTNAC	3 cut(s)	154, 578, 993
MalI	GATC	4 cut(s)	87, 573, 601, 654
MboI	GATC	4 cut(s)	85, 571, 599, 652
MboII	GAAGA	3 cut(s)	371, 725, 803
MfeI	CAATTG	2 cut(s)	81, 453
MflI	RGATCY	1 cut(s)	571
MlsI	TGGCCA	1 cut(s)	777
MluCI	AATT	7 cut(s)	81, 371, 453, 468, 752, 944, 978
MluNI	TGGCCA	1 cut(s)	777
MlyI	GAGTC	2 cut(s)	56, 959
MmeI	TCCRAC	2 cut(s)	131, 781
MnlI	CCTC	6 cut(s)	169, 184, 343, 502, 680, 703
Mox20I	TGGCCA	1 cut(s)	777
MroNI	GCCGGC	1 cut(s)	971
MscI	TGGCCA	1 cut(s)	777
MseI	TTAA	1 cut(s)	366
MslI	CAYNNNNRTG	2 cut(s)	234, 932
Msp20I	TGGCCA	1 cut(s)	777
MspI	CCGG	3 cut(s)	575, 782, 972
MspR9I	CCNGG	4 cut(s)	569, 576, 642, 783
MunI	CAATTG	2 cut(s)	81, 453
Mva1269I	GAATGC	1 cut(s)	927
MvaI	CCWGG	2 cut(s)	569, 642
MwoI	GCNNNNNNNGC	4 cut(s)	142, 677, 811, 916
NaeI	GCCGGC	1 cut(s)	973
NciI	CCSGG	2 cut(s)	576, 783
NcoI	CCATGG	1 cut(s)	235
NdeII	GATC	4 cut(s)	85, 571, 599, 652
NgoMIV	GCCGGC	1 cut(s)	971
NheI	GCTAGC	1 cut(s)	769
NlaIII	CATG	2 cut(s)	239, 726
NlaIV	GGNNCC	5 cut(s)	259, 354, 530, 573, 691
NmeAIII	GCCGAG	1 cut(s)	710
PcsI	WCGNNNNNNNCGW	1 cut(s)	682
PctI	GAATGC	1 cut(s)	927
PdiI	GCCGGC	1 cut(s)	973
PfeI	GAWTC	3 cut(s)	440, 727, 836
PfoI	TCCNGGA	3 cut(s)	567, 640, 781
PkrI	GCNGC	3 cut(s)	31, 594, 768
PleI	GAGTC	2 cut(s)	56, 958
PpsI	GAGTC	2 cut(s)	56, 958
PpuMI	RGGWCCY	1 cut(s)	352
PshBI	ATTAAT	1 cut(s)	366
PsiI	TTATAA	1 cut(s)	317
Psp5II	RGGWCCY	1 cut(s)	352
Psp6I	CCWGG	2 cut(s)	567, 640
PspEI	GGTNACC	1 cut(s)	578
PspGI	CCWGG	2 cut(s)	567, 640
PspN4I	GGNNCC	5 cut(s)	259, 354, 530, 573, 691
PspPI	GGNCC	1 cut(s)	352
PspPPI	RGGWCCY	1 cut(s)	352
PstNI	CAGNNNCTG	1 cut(s)	125
PsuI	RGATCY	1 cut(s)	571
RsaI	GTAC	3 cut(s)	68, 589, 721
RsaNI	GTAC	3 cut(s)	67, 588, 720
RseI	CAYNNNNRTG	2 cut(s)	234, 932
SaqAI	TTAA	1 cut(s)	366
SatI	GCNGC	3 cut(s)	30, 593, 767
Sau3AI	GATC	4 cut(s)	85, 571, 599, 652
Sau96I	GGNCC	1 cut(s)	352
SchI	GAGTC	2 cut(s)	56, 959
ScrFI	CCNGG	4 cut(s)	569, 576, 642, 783
SfaNI	GCATC	2 cut(s)	417, 484
SinI	GGWCC	1 cut(s)	352
SmiMI	CAYNNNNRTG	2 cut(s)	234, 932
SpeI	ACTAGT	1 cut(s)	476
Sse9I	AATT	7 cut(s)	81, 371, 453, 468, 752, 944, 978
SsiI	CCGC	2 cut(s)	208, 975
SspMI	CTAG	2 cut(s)	477, 770
StyD4I	CCNGG	4 cut(s)	567, 574, 640, 781
StyI	CCWWGG	2 cut(s)	235, 583
TaaI	ACNGT	4 cut(s)	75, 215, 313, 518
TaiI	ACGT	3 cut(s)	156, 527, 886
TaqI	TCGA	3 cut(s)	544, 676, 800
TasI	AATT	7 cut(s)	81, 371, 453, 468, 752, 944, 978
TfiI	GAWTC	3 cut(s)	440, 727, 836
Tru1I	TTAA	1 cut(s)	366
Tru9I	TTAA	1 cut(s)	366
TscAI	CASTG	7 cut(s)	30, 130, 147, 200, 813, 861, 880
TseI	GCWGC	3 cut(s)	29, 592, 766
TspDTI	ATGAA	4 cut(s)	207, 384, 425, 828
TspRI	CASTG	7 cut(s)	30, 130, 147, 200, 813, 861, 880
VpaK11BI	GGWCC	1 cut(s)	352
VspI	ATTAAT	1 cut(s)	366
XapI	RAATTY	5 cut(s)	371, 468, 752, 944, 978
XspI	CTAG	2 cut(s)	477, 770

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.