AT4G38040

Exostosin family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
4
OG0007378
Physical Location & Seq
Forward (+)
17867438 .. 17869542
2105 bp
Loading structure...
UTR
Exon/CDS
Intron
AT4G38040.1

Sequence Viewer

Length: 1278 bp
ATGACGATCGTTAAACCGTCGCAGTTCTCATTCTCCGGCGGCGGATCTTCGCCGTTATGTTCACTCAAAAGCTCACTCCTCACCGTCGCTATTCTCACTTTCATTTCCCTCTTCTACCTCTCTCTCAATTCCTTACGCACTTCGCCGCCGTCTCCTGTCATCGTGGTAACACCGATTCATGTTCCTCATACCTTCGTGAATGAGTATAAGACTGATAACGAAACACCGACGATGGAAGAAGAAACCTACTCCGATGTTTATCACTCACCGGAGGCTTTCCGATTGAATTACGCCGAGATGGAGAAGAGATTCAAGGTTTATATTTATCCCGACGGCGATCCAAATACGTTTTATCAAACGCCGAGGAAAGTCACCGGTAAATACGCTAGTGAGGGGTACTTCTTCCAGAACATTAGAGAGAGTCGATTTCGAACCCTAGATCCAGATGAAGCAGATCTCTTCTTCATTCCAATCTCTTGTCACAAGATGCGAGGCAAAGGAACATCATATGAAAATATGACTGTGATTGTTCAAAACTATGTTGATGGATTGATAGCTAAGTATCCTTATTGGAATAGAACTTTAGGAGCAGATCACTTCTTTGTTACATGTCATGATGTTGGTGTTAGAGCATTTGAGGGATCTCCGCTTCTGATTAAGAATACTATTAGGGTTGTGTGCTCACCTAGCTACAATGTTGGTTTCATTCCTCACAAAGATGTTGCTTTGCCTCAAGTTCTTCAGCCATTTGCTCTCCCTGCTGGTGGAAATGATGTTGAGAATCGGACGACTCTTGGTTTTTGGGCTGGTCATCGAAATTCTAAGATACGGGTTATACTTGCTCATGTGTGGGAAAACGACACAGAGCTTGATATTTCAAACAACAGAATTAACAGAGCTACAGGGCATTTGGTGTATCAGAAGAGATTCTACCGGACTAAATTCTGCATATGCCCTGGTGGTTCTCAAGTAAACAGCGCTCGCATAACGGACTCGATCCATTACGGATGTATTCCTGTCATATTATCAGACTACTACGACCTCCCTTTCAACGACATCCTGAATTGGCGAAAATTTGCGGTTGTACTCAGAGAGCAAGATGTCTATAACCTTAAGCAGATCCTCAAGAACATACCTCACTCAGAGTTTGTTTCGTTGCATAACAACTTGGTCAAGGTGCAGAAGCATTTTCAATGGAACTCACCTCCAGTCAAATTCGACGCATTTCACATGATCATGTATGAACTATGGTTACGCCACCATGTCGTCAAGTACTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Exostosin

Protein Analysis

425

Amino Acids

48.96

Weight (kDa)

8.65

Isoelectric Point (pI)

45.32

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Exostosin_GT47 PF03016 100 - 377 2.9e-58 Exostosin GT47 domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 5 cut(s) 39, 42, 146, 647, 1079
AclWI GGATC 6 cut(s) 52, 332, 434, 649, 991, 1114
AcsI RAATTY 4 cut(s) 817, 941, 1073, 1214
AcuI CTGAAG 1 cut(s) 725
AfaI GTAC 3 cut(s) 398, 1086, 1274
AfeI AGCGCT 1 cut(s) 979
AfiI CCNNNNNNNGG 1 cut(s) 764
AflII CTTAAG 1 cut(s) 1112
AflIII ACRYGT 1 cut(s) 608
AgeI ACCGGT 1 cut(s) 374
AgsI TTSAA 6 cut(s) 286, 313, 533, 879, 1051, 1193
AjnI CCWGG 1 cut(s) 955
AloI GAACNNNNNNTCC 2 cut(s) 424, 456
AluBI AGCT 5 cut(s) 72, 557, 690, 868, 899
AluI AGCT 5 cut(s) 72, 557, 690, 868, 899
Alw21I GWGCWC 1 cut(s) 683
Alw26I GTCTC 1 cut(s) 156
AlwI GGATC 6 cut(s) 52, 332, 434, 649, 991, 1114
Aor51HI AGCGCT 1 cut(s) 979
ApoI RAATTY 4 cut(s) 817, 941, 1073, 1214
AsiGI ACCGGT 1 cut(s) 374
Asp700I GAANNNNTTC 2 cut(s) 308, 926
AspLEI GCGC 1 cut(s) 980
AsuHPI GGTGA 5 cut(s) 73, 258, 364, 675, 1194
AsuII TTCGAA 1 cut(s) 430
BarI GAAGNNNNNNTAC 2 cut(s) 914, 946
Bbv12I GWGCWC 1 cut(s) 683
BccI CCATC 3 cut(s) 226, 292, 539
BceAI ACGGC 3 cut(s) 37, 133, 349
BciT130I CCWGG 1 cut(s) 957
BciVI GTATCC 1 cut(s) 573
BclI TGATCA 1 cut(s) 1233
BcoDI GTCTC 1 cut(s) 156
BfaI CTAG 3 cut(s) 387, 437, 687
BfmI CTRYAG 1 cut(s) 900
BfoI RGCGCY 1 cut(s) 981
BfrI CTTAAG 1 cut(s) 1112
BfuI GTATCC 1 cut(s) 573
BglII AGATCT 1 cut(s) 454
BisI GCNGC 2 cut(s) 40, 146
BlsI GCNGC 2 cut(s) 41, 147
BmcAI AGTACT 1 cut(s) 1274
Bme1390I CCNGG 1 cut(s) 957
BmrFI CCNGG 1 cut(s) 957
BmsI GCATC 1 cut(s) 477
BpmI CTGGAG 1 cut(s) 1191
Bpu14I TTCGAA 1 cut(s) 430
BpuEI CTTGAG 3 cut(s) 717, 951, 1109
BsaBI GATNNNNATC 1 cut(s) 258
BsaJI CCNNGG 2 cut(s) 362, 955
BsaWI WCCGGW 3 cut(s) 268, 374, 933
Bsc4I CCNNNNNNNGG 1 cut(s) 764
Bse118I RCCGGY 1 cut(s) 374
Bse1I ACTGG 1 cut(s) 1208
Bse8I GATNNNNATC 1 cut(s) 258
BseBI CCWGG 1 cut(s) 957
BseDI CCNNGG 2 cut(s) 362, 955
BseGI GGATG 2 cut(s) 1013, 1056
BseJI GATNNNNATC 1 cut(s) 258
BseLI CCNNNNNNNGG 1 cut(s) 764
BseMII CTCAG 2 cut(s) 1102, 1155
BseNI ACTGG 1 cut(s) 1208
BseRI GAGGAG 1 cut(s) 68
BsgI GTGCAG 1 cut(s) 1199
Bsh1285I CGRYCG 1 cut(s) 9
BshTI ACCGGT 1 cut(s) 374
BsiEI CGRYCG 1 cut(s) 9
BsiHKAI GWGCWC 1 cut(s) 683
BsiSI CCGG 4 cut(s) 36, 269, 375, 934
BslI CCNNNNNNNGG 1 cut(s) 764
BsmAI GTCTC 1 cut(s) 156
BsmBI CGTCTC 1 cut(s) 156
Bsp119I TTCGAA 1 cut(s) 430
Bsp1286I GDGCHC 1 cut(s) 683
BspACI CCGC 5 cut(s) 39, 42, 146, 647, 1079
BspCNI CTCAG 2 cut(s) 1101, 1154
BspHI TCATGA 1 cut(s) 613
BspPI GGATC 6 cut(s) 52, 332, 434, 649, 991, 1114
BspT104I TTCGAA 1 cut(s) 430
BspTI CTTAAG 1 cut(s) 1112
BsrFI RCCGGY 1 cut(s) 374
BsrI ACTGG 1 cut(s) 1208
BssAI RCCGGY 1 cut(s) 374
BssECI CCNNGG 2 cut(s) 362, 955
Bst2UI CCWGG 1 cut(s) 957
Bst4CI ACNGT 3 cut(s) 18, 85, 523
Bst6I CTCTTC 4 cut(s) 116, 299, 464, 917
BstAFI CTTAAG 1 cut(s) 1112
BstBI TTCGAA 1 cut(s) 430
BstC8I GCNNGC 1 cut(s) 982
BstDEI CTNAG 4 cut(s) 558, 822, 1088, 1141
BstF5I GGATG 2 cut(s) 1013, 1056
BstH2I RGCGCY 1 cut(s) 981
BstHHI GCGC 1 cut(s) 980
BstMAI GTCTC 1 cut(s) 156
BstMCI CGRYCG 1 cut(s) 9
BstMWI GCNNNNNNNGC 2 cut(s) 687, 758
BstNI CCWGG 1 cut(s) 957
BstNSI RCATGY 1 cut(s) 612
BstSCI CCNGG 1 cut(s) 955
BstSFI CTRYAG 1 cut(s) 900
BstX2I RGATCY 5 cut(s) 44, 439, 454, 641, 1119
BstYI RGATCY 5 cut(s) 44, 439, 454, 641, 1119
BsuI GTATCC 1 cut(s) 573
BtsCI GGATG 2 cut(s) 1013, 1056
Cac8I GCNNGC 1 cut(s) 982
CciI TCATGA 1 cut(s) 613
CfoI GCGC 1 cut(s) 980
Cfr10I RCCGGY 1 cut(s) 374
CseI GACGC 1 cut(s) 1229
Csp6I GTAC 3 cut(s) 397, 1085, 1273
CspAI ACCGGT 1 cut(s) 374
CviAII CATG 7 cut(s) 179, 609, 614, 845, 1231, 1237, 1262
CviJI RGCY 8 cut(s) 72, 275, 557, 690, 745, 806, 868, 899
CviKI_1 RGCY 8 cut(s) 72, 275, 557, 690, 745, 806, 868, 899
CviQI GTAC 3 cut(s) 397, 1085, 1273
DdeI CTNAG 4 cut(s) 558, 822, 1088, 1141
Eam1104I CTCTTC 4 cut(s) 116, 299, 464, 917
EarI CTCTTC 4 cut(s) 116, 299, 464, 917
EciI GGCGGA 1 cut(s) 57
Eco47III AGCGCT 1 cut(s) 979
Eco57I CTGAAG 1 cut(s) 725
EcoRII CCWGG 1 cut(s) 955
Esp3I CGTCTC 1 cut(s) 156
FaeI CATG 7 cut(s) 182, 612, 617, 848, 1234, 1240, 1265
FatI CATG 7 cut(s) 178, 608, 613, 844, 1230, 1236, 1261
FauNDI CATATG 2 cut(s) 508, 950
FbaI TGATCA 1 cut(s) 1233
Fnu4HI GCNGC 2 cut(s) 40, 146
FokI GGATG 2 cut(s) 1020, 1043
Fsp4HI GCNGC 2 cut(s) 40, 146
FspBI CTAG 3 cut(s) 387, 437, 687
GlaI GCGC 1 cut(s) 979
GluI GCNGC 2 cut(s) 40, 146
GsuI CTGGAG 1 cut(s) 1191
HaeII RGCGCY 1 cut(s) 981
HapII CCGG 4 cut(s) 36, 269, 375, 934
HgaI GACGC 1 cut(s) 1229
HhaI GCGC 1 cut(s) 980
Hin1II CATG 7 cut(s) 182, 612, 617, 848, 1234, 1240, 1265
Hin6I GCGC 1 cut(s) 978
HinP1I GCGC 1 cut(s) 978
HinfI GANTC 7 cut(s) 175, 309, 421, 781, 790, 927, 992
HpaII CCGG 4 cut(s) 36, 269, 375, 934
HphI GGTGA 5 cut(s) 73, 258, 364, 675, 1194
Hpy166II GTNNAC 2 cut(s) 62, 973
Hpy188I TCNGA 8 cut(s) 253, 281, 654, 786, 921, 1030, 1091, 1144
Hpy188III TCNNGA 7 cut(s) 196, 329, 406, 443, 614, 1060, 1126
Hpy8I GTNNAC 2 cut(s) 62, 973
Hpy99I CGWCG 5 cut(s) 22, 89, 232, 335, 1223
HpyAV CCTTC 1 cut(s) 202
HpyCH4III ACNGT 3 cut(s) 18, 85, 523
HpyCH4IV ACGT 1 cut(s) 347
HpyCH4V TGCA 3 cut(s) 948, 1159, 1180
HpyF10VI GCNNNNNNNGC 2 cut(s) 687, 758
HpyF3I CTNAG 4 cut(s) 558, 822, 1088, 1141
HpySE526I ACGT 1 cut(s) 347
Hsp92II CATG 7 cut(s) 182, 612, 617, 848, 1234, 1240, 1265
HspAI GCGC 1 cut(s) 978
Ksp22I TGATCA 1 cut(s) 1233
LmnI GCTCC 1 cut(s) 587
LweI GCATC 1 cut(s) 477
MaeI CTAG 3 cut(s) 387, 437, 687
MaeII ACGT 1 cut(s) 347
MaeIII GTNAC 5 cut(s) 166, 370, 479, 604, 1251
MflI RGATCY 5 cut(s) 44, 439, 454, 641, 1119
MhlI GDGCHC 1 cut(s) 683
MluCI AATT 8 cut(s) 127, 286, 817, 888, 941, 1063, 1073, 1214
MlyI GAGTC 3 cut(s) 430, 784, 986
MroXI GAANNNNTTC 2 cut(s) 308, 926
MseI TTAA 4 cut(s) 12, 657, 891, 1113
MslI CAYNNNNRTG 2 cut(s) 717, 1235
MspCI CTTAAG 1 cut(s) 1112
MspI CCGG 4 cut(s) 36, 269, 375, 934
MspR9I CCNGG 1 cut(s) 957
MvaI CCWGG 1 cut(s) 957
MwoI GCNNNNNNNGC 2 cut(s) 687, 758
NdeI CATATG 2 cut(s) 508, 950
NlaIII CATG 7 cut(s) 182, 612, 617, 848, 1234, 1240, 1265
NmeAIII GCCGAG 2 cut(s) 319, 387
NmuCI GTSAC 2 cut(s) 370, 479
NspI RCATGY 1 cut(s) 612
NspV TTCGAA 1 cut(s) 430
PagI TCATGA 1 cut(s) 613
PciI ACATGT 1 cut(s) 608
PdmI GAANNNNTTC 2 cut(s) 308, 926
PfeI GAWTC 4 cut(s) 175, 309, 781, 927
PinAI ACCGGT 1 cut(s) 374
PkrI GCNGC 2 cut(s) 41, 147
Ple19I CGATCG 1 cut(s) 9
PleI GAGTC 3 cut(s) 429, 784, 986
PpsI GAGTC 3 cut(s) 429, 784, 986
PscI ACATGT 1 cut(s) 608
Psp6I CCWGG 1 cut(s) 955
PspGI CCWGG 1 cut(s) 955
PsrI GAACNNNNNNTAC 2 cut(s) 1236, 1268
PsuI RGATCY 5 cut(s) 44, 439, 454, 641, 1119
PvuI CGATCG 1 cut(s) 9
RsaI GTAC 3 cut(s) 398, 1086, 1274
RsaNI GTAC 3 cut(s) 397, 1085, 1273
RseI CAYNNNNRTG 2 cut(s) 717, 1235
SaqAI TTAA 4 cut(s) 12, 657, 891, 1113
SatI GCNGC 2 cut(s) 40, 146
ScaI AGTACT 1 cut(s) 1274
SchI GAGTC 3 cut(s) 430, 784, 986
ScrFI CCNGG 1 cut(s) 957
SduI GDGCHC 1 cut(s) 683
SfaNI GCATC 1 cut(s) 477
SfcI CTRYAG 1 cut(s) 900
SfuI TTCGAA 1 cut(s) 430
SmiMI CAYNNNNRTG 2 cut(s) 717, 1235
SmlI CTYRAG 4 cut(s) 732, 966, 1112, 1124
SmoI CTYRAG 4 cut(s) 732, 966, 1112, 1124
Sse9I AATT 8 cut(s) 127, 286, 817, 888, 941, 1063, 1073, 1214
SsiI CCGC 5 cut(s) 39, 42, 146, 647, 1079
SspMI CTAG 3 cut(s) 387, 437, 687
StyD4I CCNGG 1 cut(s) 955
TaaI ACNGT 3 cut(s) 18, 85, 523
TaiI ACGT 1 cut(s) 350
TaqI TCGA 5 cut(s) 424, 430, 814, 995, 1218
TasI AATT 8 cut(s) 127, 286, 817, 888, 941, 1063, 1073, 1214
TatI WGTACW 2 cut(s) 1084, 1272
TauI GCSGC 2 cut(s) 42, 148
TfiI GAWTC 4 cut(s) 175, 309, 781, 927
Tru1I TTAA 4 cut(s) 12, 657, 891, 1113
Tru9I TTAA 4 cut(s) 12, 657, 891, 1113
TseFI GTSAC 2 cut(s) 370, 479
Tsp45I GTSAC 2 cut(s) 370, 479
TspDTI ATGAA 7 cut(s) 91, 167, 454, 462, 525, 694, 1257
TspGWI ACGGA 2 cut(s) 1004, 1020
Vha464I CTTAAG 1 cut(s) 1112
XapI RAATTY 4 cut(s) 817, 941, 1073, 1214
XceI RCATGY 1 cut(s) 612
XmnI GAANNNNTTC 2 cut(s) 308, 926
XspI CTAG 3 cut(s) 387, 437, 687
ZrmI AGTACT 1 cut(s) 1274
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.