RchiOBHm_Chr4g0406901

Exostosin family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
4
OG0007378
Physical Location & Seq
Reverse (-)
28961308 .. 28962423
1116 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ37818

Sequence Viewer

Length: 519 bp
ATGAGGATCTCTCATCACTCTCGCCGTCTTCACCGTACTTTCCCTTGCCTACTTCTCCCTCAACTTCTCCGTCTCCTCTCCTCCCCCTCCCTCCGTCACCTCAACCATCGACCTTCCCGTCGTCAGGCAAGAGGAGACTTCCAACTCCAATCTGTCACCCGAGGAAGAGGAAGAGTTTTTGGACATTTACCACTCACCGGAGGTGTTCGGTTGAACTACGCCGAAATGGAGCGGAAATTCACGGTGTATATTTATCCAAACGGCGATCAGAACACGTTTTTCCAGATGCCGAGGAAGCTCACCTGGAAATATTCTAGTGAGGGATATTTCTTTCAGAATATTAGAAAGGGAAGGTTTCAGACCGAGGATCCGGGTCAGGCTCAGCTCTTCTTCATCCCTATATCCTGCCACAAGATGCGAGGCAAGTGTGATTTGTTCAGTGTTGTGGATCTGACTAAACCGATTGCTTTTGGTTCTACTCTTTCGGAACTCATTACTGATTTTGGGTACTTCATATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Exostosin

Protein Analysis

172

Amino Acids

20.14

Weight (kDa)

10.59

Isoelectric Point (pI)

51.32

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 117
AccBSI CCGCTC 1 cut(s) 232
AciI CCGC 1 cut(s) 232
AclWI GGATC 4 cut(s) 14, 362, 375, 456
AcsI RAATTY 1 cut(s) 236
AfaI GTAC 2 cut(s) 37, 509
AfiI CCNNNNNNNGG 2 cut(s) 124, 197
AflIII ACRYGT 1 cut(s) 273
AgsI TTSAA 1 cut(s) 214
AjnI CCWGG 1 cut(s) 302
AluBI AGCT 2 cut(s) 298, 385
AluI AGCT 2 cut(s) 298, 385
Alw26I GTCTC 2 cut(s) 77, 129
AlwI GGATC 4 cut(s) 14, 362, 375, 456
Ama87I CYCGRG 1 cut(s) 159
ApoI RAATTY 1 cut(s) 236
AsuC2I CCSGG 1 cut(s) 372
AsuHPI GGTGA 5 cut(s) 23, 89, 148, 187, 292
AvaI CYCGRG 1 cut(s) 159
BamHI GGATCC 1 cut(s) 367
BbsI GAAGAC 1 cut(s) 20
BccI CCATC 1 cut(s) 114
BceAI ACGGC 2 cut(s) 9, 277
BciT130I CCWGG 1 cut(s) 304
BcnI CCSGG 1 cut(s) 372
BcoDI GTCTC 2 cut(s) 77, 129
BfaI CTAG 1 cut(s) 315
BlpI GCTNAGC 1 cut(s) 381
Bme1390I CCNGG 2 cut(s) 304, 372
BmeT110I CYCGRG 1 cut(s) 159
BmiI GGNNCC 1 cut(s) 369
BmrFI CCNGG 2 cut(s) 304, 372
BmsI GCATC 2 cut(s) 276, 405
BpiI GAAGAC 1 cut(s) 20
BplI GAGNNNNNCTC 1 cut(s) 27
Bpu1102I GCTNAGC 1 cut(s) 381
BpuMI CCSGG 1 cut(s) 372
BsaJI CCNNGG 3 cut(s) 160, 290, 363
BsaWI WCCGGW 1 cut(s) 197
Bsc4I CCNNNNNNNGG 2 cut(s) 124, 197
BseBI CCWGG 1 cut(s) 304
BseDI CCNNGG 3 cut(s) 160, 290, 363
BseGI GGATG 1 cut(s) 393
BseLI CCNNNNNNNGG 2 cut(s) 124, 197
BseMII CTCAG 1 cut(s) 395
BseRI GAGGAG 3 cut(s) 65, 70, 147
BsiHKCI CYCGRG 1 cut(s) 159
BsiSI CCGG 2 cut(s) 198, 371
BslI CCNNNNNNNGG 2 cut(s) 124, 197
BsmAI GTCTC 2 cut(s) 77, 129
BsmBI CGTCTC 1 cut(s) 77
BsoBI CYCGRG 1 cut(s) 159
Bsp143I GATC 4 cut(s) 6, 265, 367, 448
Bsp1720I GCTNAGC 1 cut(s) 381
BspACI CCGC 1 cut(s) 232
BspCNI CTCAG 1 cut(s) 394
BspLI GGNNCC 1 cut(s) 369
BspPI GGATC 4 cut(s) 14, 362, 375, 456
BspQI GCTCTTC 1 cut(s) 392
BsrBI CCGCTC 1 cut(s) 232
BssECI CCNNGG 3 cut(s) 160, 290, 363
BssMI GATC 4 cut(s) 6, 265, 367, 448
Bst2UI CCWGG 1 cut(s) 304
Bst4CI ACNGT 2 cut(s) 35, 244
Bst6I CTCTTC 3 cut(s) 160, 166, 392
BstDEI CTNAG 1 cut(s) 381
BstF5I GGATG 1 cut(s) 393
BstKTI GATC 4 cut(s) 9, 268, 370, 451
BstMAI GTCTC 2 cut(s) 77, 129
BstMBI GATC 4 cut(s) 6, 265, 367, 448
BstMWI GCNNNNNNNGC 1 cut(s) 295
BstNI CCWGG 1 cut(s) 304
BstSCI CCNGG 2 cut(s) 302, 370
BstV2I GAAGAC 1 cut(s) 20
BstX2I RGATCY 3 cut(s) 6, 367, 448
BstYI RGATCY 3 cut(s) 6, 367, 448
BtsCI GGATG 1 cut(s) 393
BtsIMutI CAGTG 1 cut(s) 445
Csp6I GTAC 2 cut(s) 36, 508
CviJI RGCY 3 cut(s) 298, 380, 385
CviKI_1 RGCY 3 cut(s) 298, 380, 385
CviQI GTAC 2 cut(s) 36, 508
DdeI CTNAG 1 cut(s) 381
DpnI GATC 4 cut(s) 8, 267, 369, 450
DpnII GATC 4 cut(s) 6, 265, 367, 448
DrdI GACNNNNNNGTC 1 cut(s) 117
DseDI GACNNNNNNGTC 1 cut(s) 117
Eam1104I CTCTTC 3 cut(s) 160, 166, 392
EarI CTCTTC 3 cut(s) 160, 166, 392
Eco88I CYCGRG 1 cut(s) 159
EcoRII CCWGG 1 cut(s) 302
Esp3I CGTCTC 1 cut(s) 77
FaiI YATR 4 cut(s) 249, 401, 515, 517
FauNDI CATATG 1 cut(s) 515
FokI GGATG 1 cut(s) 380
FspBI CTAG 1 cut(s) 315
HapII CCGG 2 cut(s) 198, 371
HpaII CCGG 2 cut(s) 198, 371
HphI GGTGA 5 cut(s) 23, 89, 148, 187, 292
Hpy188I TCNGA 5 cut(s) 270, 336, 360, 453, 487
Hpy188III TCNNGA 1 cut(s) 283
Hpy99I CGWCG 1 cut(s) 123
HpyAV CCTTC 2 cut(s) 123, 345
HpyCH4III ACNGT 2 cut(s) 35, 244
HpyCH4IV ACGT 1 cut(s) 275
HpyF10VI GCNNNNNNNGC 1 cut(s) 295
HpyF3I CTNAG 1 cut(s) 381
HpySE526I ACGT 1 cut(s) 275
Kzo9I GATC 4 cut(s) 6, 265, 367, 448
LguI GCTCTTC 1 cut(s) 392
LmnI GCTCC 1 cut(s) 229
LpnPI CCDG 8 cut(s) 110, 211, 289, 296, 316, 362, 384, 418
LweI GCATC 2 cut(s) 276, 405
MaeI CTAG 1 cut(s) 315
MaeII ACGT 1 cut(s) 275
MaeIII GTNAC 2 cut(s) 95, 154
MalI GATC 4 cut(s) 8, 267, 369, 450
MbiI CCGCTC 1 cut(s) 232
MboI GATC 4 cut(s) 6, 265, 367, 448
MboII GAAGA 5 cut(s) 20, 177, 183, 379, 382
MflI RGATCY 3 cut(s) 6, 367, 448
MluCI AATT 1 cut(s) 236
MmeI TCCRAC 1 cut(s) 166
MspI CCGG 2 cut(s) 198, 371
MspR9I CCNGG 2 cut(s) 304, 372
MvaI CCWGG 1 cut(s) 304
MwoI GCNNNNNNNGC 1 cut(s) 295
NciI CCSGG 1 cut(s) 372
NdeI CATATG 1 cut(s) 515
NdeII GATC 4 cut(s) 6, 265, 367, 448
NlaIV GGNNCC 1 cut(s) 369
NmeAIII GCCGAG 1 cut(s) 315
NmuCI GTSAC 2 cut(s) 95, 154
PciSI GCTCTTC 1 cut(s) 392
PcsI WCGNNNNNNNCGW 1 cut(s) 115
Psp6I CCWGG 1 cut(s) 302
PspGI CCWGG 1 cut(s) 302
PspN4I GGNNCC 1 cut(s) 369
PsuI RGATCY 3 cut(s) 6, 367, 448
RsaI GTAC 2 cut(s) 37, 509
RsaNI GTAC 2 cut(s) 36, 508
SapI GCTCTTC 1 cut(s) 392
Sau3AI GATC 4 cut(s) 6, 265, 367, 448
ScrFI CCNGG 2 cut(s) 304, 372
SetI ASST 8 cut(s) 102, 115, 205, 278, 300, 305, 356, 387
SfaNI GCATC 2 cut(s) 276, 405
Sse9I AATT 1 cut(s) 236
SsiI CCGC 1 cut(s) 232
SspI AATATT 2 cut(s) 311, 340
SspMI CTAG 1 cut(s) 315
StyD4I CCNGG 2 cut(s) 302, 370
TaaI ACNGT 2 cut(s) 35, 244
TaiI ACGT 1 cut(s) 278
TaqI TCGA 1 cut(s) 109
TaqII GACCGA 1 cut(s) 377
TasI AATT 1 cut(s) 236
TscAI CASTG 1 cut(s) 445
TseFI GTSAC 2 cut(s) 95, 154
Tsp45I GTSAC 2 cut(s) 95, 154
TspDTI ATGAA 2 cut(s) 382, 502
TspGWI ACGGA 2 cut(s) 59, 83
TspRI CASTG 1 cut(s) 445
XapI RAATTY 1 cut(s) 236
XspI CTAG 1 cut(s) 315
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.