Rorug02G0169000

Exostosin family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000002
OG0007378
Physical Location & Seq
Reverse (-)
15172910 .. 15173592
683 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug02G0169000.1

Sequence Viewer

Length: 651 bp
ATGGCACTATCACTGGTACTGGATTTAATCGGAGGAGAAGTTTTTCAGCTGTTCTCTGGAAGTGTTACTAGAGCGGTGGACCGGAAAGCGGCATTTAGAGACCTTCTCCAAGATATTAAATACACACTCAAGTCTCTAAGAAGACAGGCCAGAGTCATTCAGCAGATACAACAGTATAATCTGGACTTGAGTCTGTCAAACAATGAAATAATCGATATTGTAACACAAATGACCAAGGGCAGAGAACTAATTGACAGCTTGTCTGGTATTAAATTTCGTTTGTGGAACTTCTGCTGCACAAATGATTGCGCTGAGCAACTTAAAGAATTGAATAGGGCTCTTGAAAGTCTGTTTGACACCCTGCAGTTGGAGCAAGTGAGGGATGCCAAGGAGACCTTGAAATTAGCAAGGCAAAACCACAAAGATCTTAAGAAAATGAAGGTTATGTTGGAGAAGATACTGCAGATGATTGACGATCCTGAAGTGAAGGGTCTACTGAGGAAGTTAGTGGACCAGAATTCAGGGGATTCGATGGATGATGCCTCGACCTCAACCCCAACCTCAAACTCAGCCTCAGGAAGTAATACAGAAGATGAAGGGAATGGCGTGGCACAAGGTGAAGTACTTGGAAATTATTGCTTTCTGTTGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Exostosin

Protein Analysis

216

Amino Acids

24.28

Weight (kDa)

5.2

Isoelectric Point (pI)

25.3

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
RPW8 PF05659 12 - 144 4.1e-13 Arabidopsis broad-spectrum mildew resistance protein RPW8
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 74
AccI GTMKAC 1 cut(s) 493
AciI CCGC 2 cut(s) 74, 89
AclWI GGATC 1 cut(s) 470
AcsI RAATTY 2 cut(s) 272, 517
AcuI CTGAAG 1 cut(s) 501
AdeI CACNNNGTG 1 cut(s) 617
AfaI GTAC 2 cut(s) 18, 624
AfiI CCNNNNNNNGG 2 cut(s) 88, 367
AflII CTTAAG 1 cut(s) 428
AgsI TTSAA 3 cut(s) 331, 344, 400
AhdI GACNNNNNGTC 1 cut(s) 259
AjuI GAANNNNNNNTTGG 2 cut(s) 431, 463
AluBI AGCT 2 cut(s) 49, 258
AluI AGCT 2 cut(s) 49, 258
Alw26I GTCTC 3 cut(s) 93, 138, 386
AlwI GGATC 1 cut(s) 470
AoxI GGCC 1 cut(s) 147
ApeKI GCWGC 1 cut(s) 294
ApoI RAATTY 2 cut(s) 272, 517
Asp700I GAANNNNTTC 1 cut(s) 42
AspLEI GCGC 1 cut(s) 311
AspS9I GGNCC 2 cut(s) 79, 511
AsuHPI GGTGA 1 cut(s) 629
AvaII GGWCC 2 cut(s) 79, 511
AxyI CCTNAGG 1 cut(s) 574
BaeI ACNNNNGTAYC 2 cut(s) 158, 191
BanII GRGCYC 1 cut(s) 340
BbsI GAAGAC 1 cut(s) 148
BbvI GCAGC 1 cut(s) 281
BccI CCATC 1 cut(s) 526
BcoDI GTCTC 3 cut(s) 93, 138, 386
BfaI CTAG 1 cut(s) 69
BfmI CTRYAG 2 cut(s) 362, 461
BfrI CTTAAG 1 cut(s) 428
BglII AGATCT 1 cut(s) 424
BisI GCNGC 2 cut(s) 90, 295
BlpI GCTNAGC 1 cut(s) 312
BlsI GCNGC 2 cut(s) 91, 296
BmcAI AGTACT 1 cut(s) 624
Bme18I GGWCC 2 cut(s) 79, 511
BmeRI GACNNNNNGTC 1 cut(s) 259
BmgT120I GGNCC 2 cut(s) 79, 511
BmsI GCATC 2 cut(s) 373, 529
BoxI GACNNNNGTC 1 cut(s) 189
BpiI GAAGAC 1 cut(s) 148
BplI GAGNNNNNCTC 2 cut(s) 90, 122
Bpu1102I GCTNAGC 1 cut(s) 312
BpuEI CTTGAG 2 cut(s) 113, 208
Bsa29I ATCGAT 1 cut(s) 213
BsaI GGTCTC 2 cut(s) 93, 386
BsaJI CCNNGG 2 cut(s) 234, 387
BsaWI WCCGGW 1 cut(s) 81
BsaXI ACNNNNNCTCC 2 cut(s) 24, 54
Bsc4I CCNNNNNNNGG 2 cut(s) 88, 367
Bse1I ACTGG 2 cut(s) 18, 24
Bse21I CCTNAGG 1 cut(s) 574
BseCI ATCGAT 1 cut(s) 213
BseDI CCNNGG 2 cut(s) 234, 387
BseGI GGATG 2 cut(s) 388, 541
BseLI CCNNNNNNNGG 2 cut(s) 88, 367
BseMII CTCAG 4 cut(s) 303, 488, 582, 588
BseNI ACTGG 2 cut(s) 18, 24
BseRI GAGGAG 1 cut(s) 48
BseXI GCAGC 1 cut(s) 281
BsgI GTGCAG 1 cut(s) 280
BshFI GGCC 1 cut(s) 149
BshVI ATCGAT 1 cut(s) 213
BsiSI CCGG 1 cut(s) 82
BslI CCNNNNNNNGG 2 cut(s) 88, 367
BsmAI GTCTC 3 cut(s) 93, 138, 386
BsnI GGCC 1 cut(s) 149
Bso31I GGTCTC 2 cut(s) 93, 386
Bsp1286I GDGCHC 1 cut(s) 340
Bsp143I GATC 2 cut(s) 424, 475
Bsp1720I GCTNAGC 1 cut(s) 312
BspACI CCGC 2 cut(s) 74, 89
BspANI GGCC 1 cut(s) 149
BspCNI CTCAG 4 cut(s) 304, 489, 581, 587
BspDI ATCGAT 1 cut(s) 213
BspMAI CTGCAG 2 cut(s) 366, 465
BspPI GGATC 1 cut(s) 470
BspTI CTTAAG 1 cut(s) 428
BspTNI GGTCTC 2 cut(s) 93, 386
BsrBI CCGCTC 1 cut(s) 74
BsrI ACTGG 2 cut(s) 18, 24
BssECI CCNNGG 2 cut(s) 234, 387
BssMI GATC 2 cut(s) 424, 475
BssT1I CCWWGG 2 cut(s) 234, 387
Bst4CI ACNGT 1 cut(s) 174
BstAFI CTTAAG 1 cut(s) 428
BstDEI CTNAG 5 cut(s) 137, 312, 497, 568, 574
BstF5I GGATG 2 cut(s) 388, 541
BstHHI GCGC 1 cut(s) 311
BstKTI GATC 2 cut(s) 427, 478
BstMAI GTCTC 3 cut(s) 93, 138, 386
BstMBI GATC 2 cut(s) 424, 475
BstMWI GCNNNNNNNGC 1 cut(s) 370
BstPAI GACNNNNGTC 1 cut(s) 189
BstSFI CTRYAG 2 cut(s) 362, 461
BstV1I GCAGC 1 cut(s) 281
BstV2I GAAGAC 1 cut(s) 148
BstX2I RGATCY 1 cut(s) 424
BstYI RGATCY 1 cut(s) 424
Bsu15I ATCGAT 1 cut(s) 213
Bsu36I CCTNAGG 1 cut(s) 574
BsuRI GGCC 1 cut(s) 149
BsuTUI ATCGAT 1 cut(s) 213
BtsCI GGATG 2 cut(s) 388, 541
BtsIMutI CAGTG 1 cut(s) 11
CfoI GCGC 1 cut(s) 311
Cfr13I GGNCC 2 cut(s) 79, 511
ClaI ATCGAT 1 cut(s) 213
Csp6I GTAC 2 cut(s) 17, 623
CviJI RGCY 5 cut(s) 49, 149, 258, 338, 572
CviKI_1 RGCY 5 cut(s) 49, 149, 258, 338, 572
CviQI GTAC 2 cut(s) 17, 623
DdeI CTNAG 5 cut(s) 137, 312, 497, 568, 574
DpnI GATC 2 cut(s) 426, 477
DpnII GATC 2 cut(s) 424, 475
DraIII CACNNNGTG 1 cut(s) 617
DriI GACNNNNNGTC 1 cut(s) 259
Eam1105I GACNNNNNGTC 1 cut(s) 259
Eco130I CCWWGG 2 cut(s) 234, 387
Eco24I GRGCYC 1 cut(s) 340
Eco31I GGTCTC 2 cut(s) 93, 386
Eco47I GGWCC 2 cut(s) 79, 511
Eco57I CTGAAG 1 cut(s) 501
Eco81I CCTNAGG 1 cut(s) 574
EcoRI GAATTC 1 cut(s) 517
EcoT14I CCWWGG 2 cut(s) 234, 387
EcoT38I GRGCYC 1 cut(s) 340
ErhI CCWWGG 2 cut(s) 234, 387
FaiI YATR 2 cut(s) 177, 446
FalI AAGNNNNNCTT 2 cut(s) 380, 412
FblI GTMKAC 1 cut(s) 493
Fnu4HI GCNGC 2 cut(s) 90, 295
FokI GGATG 2 cut(s) 395, 548
FriOI GRGCYC 1 cut(s) 340
Fsp4HI GCNGC 2 cut(s) 90, 295
FspBI CTAG 1 cut(s) 69
GlaI GCGC 1 cut(s) 310
GluI GCNGC 2 cut(s) 90, 295
HaeIII GGCC 1 cut(s) 149
HapII CCGG 1 cut(s) 82
HhaI GCGC 1 cut(s) 311
Hin6I GCGC 1 cut(s) 309
HinP1I GCGC 1 cut(s) 309
HinfI GANTC 3 cut(s) 153, 190, 527
HpaII CCGG 1 cut(s) 82
HphI GGTGA 1 cut(s) 629
Hpy166II GTNNAC 3 cut(s) 79, 494, 511
Hpy188I TCNGA 1 cut(s) 32
Hpy188III TCNNGA 5 cut(s) 57, 182, 341, 479, 576
Hpy8I GTNNAC 3 cut(s) 79, 494, 511
HpyAV CCTTC 4 cut(s) 113, 433, 481, 590
HpyCH4III ACNGT 1 cut(s) 174
HpyCH4V TGCA 3 cut(s) 297, 364, 463
HpyF10VI GCNNNNNNNGC 1 cut(s) 370
HpyF3I CTNAG 5 cut(s) 137, 312, 497, 568, 574
HspAI GCGC 1 cut(s) 309
Kzo9I GATC 2 cut(s) 424, 475
LmnI GCTCC 1 cut(s) 370
Lsp1109I GCAGC 1 cut(s) 281
LweI GCATC 2 cut(s) 373, 529
MaeI CTAG 1 cut(s) 69
MaeIII GTNAC 2 cut(s) 64, 220
MalI GATC 2 cut(s) 426, 477
MbiI CCGCTC 1 cut(s) 74
MboI GATC 2 cut(s) 424, 475
MboII GAAGA 3 cut(s) 153, 466, 602
MflI RGATCY 1 cut(s) 424
MhlI GDGCHC 1 cut(s) 340
MluCI AATT 6 cut(s) 249, 272, 326, 401, 517, 631
MlyI GAGTC 2 cut(s) 162, 199
MmeI TCCRAC 2 cut(s) 348, 429
MnlI CCTC 7 cut(s) 26, 372, 492, 553, 559, 571, 583
MroXI GAANNNNTTC 1 cut(s) 42
MseI TTAA 5 cut(s) 26, 117, 270, 321, 429
MspA1I CMGCKG 1 cut(s) 49
MspCI CTTAAG 1 cut(s) 428
MspI CCGG 1 cut(s) 82
MwoI GCNNNNNNNGC 1 cut(s) 370
NdeII GATC 2 cut(s) 424, 475
PdmI GAANNNNTTC 1 cut(s) 42
PfeI GAWTC 1 cut(s) 527
PkrI GCNGC 2 cut(s) 91, 296
PleI GAGTC 2 cut(s) 161, 198
PpsI GAGTC 2 cut(s) 161, 198
PshAI GACNNNNGTC 1 cut(s) 189
PspPI GGNCC 2 cut(s) 79, 511
PstI CTGCAG 2 cut(s) 366, 465
PsuI RGATCY 1 cut(s) 424
PvuII CAGCTG 1 cut(s) 49
RsaI GTAC 2 cut(s) 18, 624
RsaNI GTAC 2 cut(s) 17, 623
SaqAI TTAA 5 cut(s) 26, 117, 270, 321, 429
SatI GCNGC 2 cut(s) 90, 295
Sau3AI GATC 2 cut(s) 424, 475
Sau96I GGNCC 2 cut(s) 79, 511
ScaI AGTACT 1 cut(s) 624
SchI GAGTC 2 cut(s) 162, 199
SduI GDGCHC 1 cut(s) 340
SetI ASST 8 cut(s) 51, 105, 260, 398, 444, 551, 563, 619
SfaNI GCATC 2 cut(s) 373, 529
SfcI CTRYAG 2 cut(s) 362, 461
SinI GGWCC 2 cut(s) 79, 511
SmlI CTYRAG 3 cut(s) 128, 187, 428
SmoI CTYRAG 3 cut(s) 128, 187, 428
Sse9I AATT 6 cut(s) 249, 272, 326, 401, 517, 631
SsiI CCGC 2 cut(s) 74, 89
SspMI CTAG 1 cut(s) 69
StyI CCWWGG 2 cut(s) 234, 387
TaaI ACNGT 1 cut(s) 174
TaqI TCGA 3 cut(s) 213, 530, 545
TasI AATT 6 cut(s) 249, 272, 326, 401, 517, 631
TatI WGTACW 1 cut(s) 622
TauI GCSGC 1 cut(s) 92
TfiI GAWTC 1 cut(s) 527
Tru1I TTAA 5 cut(s) 26, 117, 270, 321, 429
Tru9I TTAA 5 cut(s) 26, 117, 270, 321, 429
TscAI CASTG 1 cut(s) 18
TseI GCWGC 1 cut(s) 294
TspDTI ATGAA 3 cut(s) 219, 452, 609
TspRI CASTG 1 cut(s) 18
Vha464I CTTAAG 1 cut(s) 428
VpaK11BI GGWCC 2 cut(s) 79, 511
XapI RAATTY 2 cut(s) 272, 517
XmiI GTMKAC 1 cut(s) 493
XmnI GAANNNNTTC 1 cut(s) 42
XspI CTAG 1 cut(s) 69
ZrmI AGTACT 1 cut(s) 624
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.