RchiOBHm_Chr2g0110701

Exostosin family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
2
OG0007378
Physical Location & Seq
Forward (+)
22259167 .. 22262680
3514 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ48433

Sequence Viewer

Length: 1257 bp
ATGAGTGTAGGCAAGCCGTCGTCGGCACCGCCGTCATCGCCGATGTTCTCCTTGCGAGGATCTCTCATCACTCTCGCCGTCTTCACCTTACTTTCCCTCGCCTACTTCTCCCTCAACTTCTCCGTCTCCTCCCCTCCCCCTCCCTCCGTCACCGCCACCGTCGACCGCCCCGTCGTCAGGCAGGAGAAGACTTCCGACTCCAATCCCTCACCCGAGGAGGAGGAGTTTTCGGACGTTTACCACTCGCCGGAGGTGTTCCGGTTGAACTACGCCGAAATGGAGCGGAAATTCAAGGTGTATATTTACCCCGACGGCGATCCGAAAACGTTTTACCAGACGCCGAGGAAGCTCACCGGAAAGTATTCCAGTGAGGGATATTTCTTTCAGAATATTAGAGAGGGAAGGTTTCGGACCGAGGATCCGGATCAGGCTCAGCTCTTCTTCATCCCTATCTCCTGCCACAAGATGCGAGGCAAGGGTACTTCATATGAGAATATGACCATAATTGTTCAGAACTATGTGGAGAGCTTGATAGCCAAGTATCCGTACTGGAACAGGACTTTGGGTGCAGATCACTTCTTTGTGACTTGTCACGATGTTGGTGTGAGGGCAACTGAAGGACTTCCGCTTCTTGTAAAGAATTCTATTCGAGTTGTCTGCTCCCCTAGCTATGATGTTGGCTTCATTCCACATAAAGACGTCGCTCTCCCTCAAGTACTGCAACCATTTGCTCTTCCAGCTGGAGGAAATGATGTGGAGAACAGGACAACACTTGGTTTTTGGGCTGGTCATCGGAATTCAAAGATTAGAGTTATACTGGCACGAGTATGGGAGAATGATACAGAACTTTACATCTTGAACAACAGAATAAATAGAGCTGAAGGGAACTTGTTATATCAAAAGAAGTTTTATACTACCAAGTTCTGCATATGCCCAGGTGGTTCTCAGGTCAACAGTGCTCGCCCAATGGACTCAATCCATTATGGCTGTATTCCTGTAATATTATCAAATTACTATGACCTGCCGTTCAATGACATTCTTGACTGGCGAAAATTTTCTGTCATACTTACGGAGAAGGATGTGTATCAGCTTAAACAAATACTCAAGGCCATACCCTATTCAGAGTTTCTGACACTACACAAAAACTTGATGAAGGTCCAGAAGCACTTCCAGTGGAATTCACCGCCCATCAAATACGATGCATTCCACATGGTGATGTATGATCTTTGGTTGCGCCACCATGTTATTAAATACTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Exostosin

Protein Analysis

418

Amino Acids

48.15

Weight (kDa)

8.88

Isoelectric Point (pI)

49.9

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Exostosin_GT47 PF03016 94 - 370 2e-57 Exostosin GT47 domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 170
AatII GACGTC 1 cut(s) 702
Acc36I ACCTGC 1 cut(s) 1029
AccB1I GGYRCC 1 cut(s) 25
AccBSI CCGCTC 1 cut(s) 283
AccI GTMKAC 1 cut(s) 162
AccIII TCCGGA 1 cut(s) 421
AciI CCGC 6 cut(s) 29, 153, 166, 283, 626, 1184
AclI AACGTT 1 cut(s) 326
AclWI GGATC 5 cut(s) 67, 311, 413, 426, 432
AcsI RAATTY 5 cut(s) 287, 640, 796, 1052, 1177
AcuI CTGAAG 2 cut(s) 636, 900
AcyI GRCGYC 2 cut(s) 338, 699
AdeI CACNNNGTG 1 cut(s) 1213
AfaI GTAC 3 cut(s) 481, 548, 717
AfiI CCNNNNNNNGG 3 cut(s) 177, 247, 743
AgsI TTSAA 5 cut(s) 265, 292, 801, 859, 1030
AjnI CCWGG 1 cut(s) 934
AjuI GAANNNNNNNTTGG 2 cut(s) 545, 577
AluBI AGCT 7 cut(s) 349, 436, 528, 669, 740, 878, 1090
AluI AGCT 7 cut(s) 349, 436, 528, 669, 740, 878, 1090
Alw21I GWGCWC 1 cut(s) 961
Alw26I GTCTC 1 cut(s) 130
AlwI GGATC 5 cut(s) 67, 311, 413, 426, 432
Ama87I CYCGRG 1 cut(s) 212
Aor13HI TCCGGA 1 cut(s) 421
AoxI GGCC 1 cut(s) 1107
ApoI RAATTY 5 cut(s) 287, 640, 796, 1052, 1177
Asp700I GAANNNNTTC 4 cut(s) 361, 621, 1054, 1166
AspLEI GCGC 1 cut(s) 1236
AspS9I GGNCC 2 cut(s) 411, 1156
AsuHPI GGTGA 6 cut(s) 76, 142, 201, 343, 1173, 1225
AvaI CYCGRG 1 cut(s) 212
AvaII GGWCC 2 cut(s) 411, 1156
BamHI GGATCC 1 cut(s) 418
BanI GGYRCC 1 cut(s) 25
BauI CACGAG 1 cut(s) 822
BbsI GAAGAC 2 cut(s) 73, 194
Bbv12I GWGCWC 1 cut(s) 961
BccI CCATC 1 cut(s) 1196
BceAI ACGGC 4 cut(s) 16, 62, 328, 1009
BcgI CGANNNNNNTGC 2 cut(s) 639, 673
BciT130I CCWGG 1 cut(s) 936
BciVI GTATCC 1 cut(s) 552
BcoDI GTCTC 1 cut(s) 130
BfaI CTAG 1 cut(s) 666
BfuAI ACCTGC 1 cut(s) 1029
BfuI GTATCC 1 cut(s) 552
BlpI GCTNAGC 1 cut(s) 432
BmcAI AGTACT 1 cut(s) 717
Bme1390I CCNGG 1 cut(s) 936
Bme18I GGWCC 2 cut(s) 411, 1156
BmeT110I CYCGRG 1 cut(s) 212
BmgT120I GGNCC 2 cut(s) 411, 1156
BmiI GGNNCC 2 cut(s) 27, 420
BmrFI CCNGG 1 cut(s) 936
BmsI GCATC 2 cut(s) 456, 1189
BpiI GAAGAC 2 cut(s) 73, 194
BplI GAGNNNNNCTC 2 cut(s) 48, 80
BpmI CTGGAG 1 cut(s) 762
Bpu1102I GCTNAGC 1 cut(s) 432
BpuEI CTTGAG 2 cut(s) 696, 1088
BsaBI GATNNNNATC 2 cut(s) 423, 1083
BsaHI GRCGYC 2 cut(s) 338, 699
BsaJI CCNNGG 4 cut(s) 213, 341, 414, 934
BsaWI WCCGGW 3 cut(s) 258, 353, 421
BsaXI ACNNNNNCTCC 2 cut(s) 209, 239
Bsc4I CCNNNNNNNGG 3 cut(s) 177, 247, 743
Bse1I ACTGG 5 cut(s) 366, 554, 822, 1049, 1171
Bse8I GATNNNNATC 2 cut(s) 423, 1083
BseAI TCCGGA 1 cut(s) 421
BseBI CCWGG 1 cut(s) 936
BseDI CCNNGG 4 cut(s) 213, 341, 414, 934
BseGI GGATG 2 cut(s) 444, 1084
BseJI GATNNNNATC 2 cut(s) 423, 1083
BseLI CCNNNNNNNGG 3 cut(s) 177, 247, 743
BseMII CTCAG 2 cut(s) 446, 959
BseNI ACTGG 5 cut(s) 366, 554, 822, 1049, 1171
BseRI GAGGAG 4 cut(s) 118, 230, 233, 236
BsgI GTGCAG 1 cut(s) 588
Bsh1285I CGRYCG 1 cut(s) 166
BshFI GGCC 1 cut(s) 1109
BshNI GGYRCC 1 cut(s) 25
BsiEI CGRYCG 1 cut(s) 166
BsiHKAI GWGCWC 1 cut(s) 961
BsiHKCI CYCGRG 1 cut(s) 212
BsiSI CCGG 4 cut(s) 248, 259, 354, 422
BslI CCNNNNNNNGG 3 cut(s) 177, 247, 743
BsmAI GTCTC 1 cut(s) 130
BsmBI CGTCTC 1 cut(s) 130
BsmI GAATGC 1 cut(s) 1202
BsnI GGCC 1 cut(s) 1109
BsoBI CYCGRG 1 cut(s) 212
Bsp1286I GDGCHC 1 cut(s) 961
Bsp13I TCCGGA 1 cut(s) 421
Bsp143I GATC 6 cut(s) 59, 316, 418, 424, 571, 1222
Bsp1720I GCTNAGC 1 cut(s) 432
BspACI CCGC 6 cut(s) 29, 153, 166, 283, 626, 1184
BspANI GGCC 1 cut(s) 1109
BspCNI CTCAG 2 cut(s) 445, 958
BspEI TCCGGA 1 cut(s) 421
BspLI GGNNCC 2 cut(s) 27, 420
BspMI ACCTGC 1 cut(s) 1029
BspPI GGATC 5 cut(s) 67, 311, 413, 426, 432
BspQI GCTCTTC 2 cut(s) 443, 738
BspT107I GGYRCC 1 cut(s) 25
BsrBI CCGCTC 1 cut(s) 283
BsrI ACTGG 5 cut(s) 366, 554, 822, 1049, 1171
BssECI CCNNGG 4 cut(s) 213, 341, 414, 934
BssMI GATC 6 cut(s) 59, 316, 418, 424, 571, 1222
BssNI GRCGYC 2 cut(s) 338, 699
BssSI CACGAG 1 cut(s) 822
Bst2BI CACGAG 1 cut(s) 822
Bst2UI CCWGG 1 cut(s) 936
Bst4CI ACNGT 2 cut(s) 160, 956
Bst6I CTCTTC 2 cut(s) 443, 738
BstACI GRCGYC 2 cut(s) 338, 699
BstC8I GCNNGC 2 cut(s) 14, 961
BstDEI CTNAG 2 cut(s) 432, 945
BstF5I GGATG 2 cut(s) 444, 1084
BstHHI GCGC 1 cut(s) 1236
BstKTI GATC 6 cut(s) 62, 319, 421, 427, 574, 1225
BstMAI GTCTC 1 cut(s) 130
BstMBI GATC 6 cut(s) 59, 316, 418, 424, 571, 1222
BstMCI CGRYCG 1 cut(s) 166
BstMWI GCNNNNNNNGC 4 cut(s) 37, 346, 666, 737
BstNI CCWGG 1 cut(s) 936
BstSCI CCNGG 1 cut(s) 934
BstV2I GAAGAC 2 cut(s) 73, 194
BstX2I RGATCY 2 cut(s) 59, 418
BstYI RGATCY 2 cut(s) 59, 418
BsuI GTATCC 1 cut(s) 552
BsuRI GGCC 1 cut(s) 1109
BtgZI GCGATG 1 cut(s) 21
BtsCI GGATG 2 cut(s) 444, 1084
BtsIMutI CAGTG 3 cut(s) 373, 961, 1178
BveI ACCTGC 1 cut(s) 1029
Cac8I GCNNGC 2 cut(s) 14, 961
CfoI GCGC 1 cut(s) 1236
Cfr13I GGNCC 2 cut(s) 411, 1156
CpoI CGGWCCG 1 cut(s) 411
CseI GACGC 1 cut(s) 346
Csp6I GTAC 3 cut(s) 480, 547, 716
CspI CGGWCCG 1 cut(s) 411
CviAII CATG 2 cut(s) 1210, 1241
CviQI GTAC 3 cut(s) 480, 547, 716
DdeI CTNAG 2 cut(s) 432, 945
DpnI GATC 6 cut(s) 61, 318, 420, 426, 573, 1224
DpnII GATC 6 cut(s) 59, 316, 418, 424, 571, 1222
DraIII CACNNNGTG 1 cut(s) 1213
DrdI GACNNNNNNGTC 1 cut(s) 170
DseDI GACNNNNNNGTC 1 cut(s) 170
Eam1104I CTCTTC 2 cut(s) 443, 738
EarI CTCTTC 2 cut(s) 443, 738
Eco47I GGWCC 2 cut(s) 411, 1156
Eco57I CTGAAG 2 cut(s) 636, 900
Eco88I CYCGRG 1 cut(s) 212
EcoRI GAATTC 3 cut(s) 640, 796, 1177
EcoRII CCWGG 1 cut(s) 934
EcoT22I ATGCAT 1 cut(s) 1204
Esp3I CGTCTC 1 cut(s) 130
FaeI CATG 2 cut(s) 1213, 1244
FatI CATG 2 cut(s) 1209, 1240
FauNDI CATATG 2 cut(s) 487, 929
FblI GTMKAC 1 cut(s) 162
FokI GGATG 2 cut(s) 431, 1091
FspBI CTAG 1 cut(s) 666
GlaI GCGC 1 cut(s) 1235
GsuI CTGGAG 1 cut(s) 762
HaeIII GGCC 1 cut(s) 1109
HapII CCGG 4 cut(s) 248, 259, 354, 422
HgaI GACGC 1 cut(s) 346
HhaI GCGC 1 cut(s) 1236
Hin1I GRCGYC 2 cut(s) 338, 699
Hin1II CATG 2 cut(s) 1213, 1244
Hin6I GCGC 1 cut(s) 1234
HinP1I GCGC 1 cut(s) 1234
HincII GTYRAC 2 cut(s) 163, 952
HindII GTYRAC 2 cut(s) 163, 952
HinfI GANTC 2 cut(s) 197, 971
HpaII CCGG 4 cut(s) 248, 259, 354, 422
HphI GGTGA 6 cut(s) 76, 142, 201, 343, 1173, 1225
Hpy166II GTNNAC 3 cut(s) 163, 238, 952
Hpy188I TCNGA 9 cut(s) 196, 232, 321, 387, 411, 513, 795, 1123, 1131
Hpy188III TCNNGA 5 cut(s) 422, 593, 856, 1040, 1159
Hpy8I GTNNAC 3 cut(s) 163, 238, 952
Hpy99I CGWCG 6 cut(s) 22, 25, 164, 176, 314, 704
HpyAV CCTTC 5 cut(s) 396, 611, 875, 1069, 1147
HpyCH4III ACNGT 2 cut(s) 160, 956
HpyCH4IV ACGT 3 cut(s) 234, 326, 699
HpyCH4V TGCA 4 cut(s) 569, 721, 927, 1202
HpyF10VI GCNNNNNNNGC 4 cut(s) 37, 346, 666, 737
HpyF3I CTNAG 2 cut(s) 432, 945
HpySE526I ACGT 3 cut(s) 234, 326, 699
Hsp92I GRCGYC 2 cut(s) 338, 699
Hsp92II CATG 2 cut(s) 1213, 1244
HspAI GCGC 1 cut(s) 1234
Kpn2I TCCGGA 1 cut(s) 421
Kzo9I GATC 6 cut(s) 59, 316, 418, 424, 571, 1222
LguI GCTCTTC 2 cut(s) 443, 738
LmnI GCTCC 2 cut(s) 280, 665
LweI GCATC 2 cut(s) 456, 1189
MaeI CTAG 1 cut(s) 666
MaeII ACGT 3 cut(s) 234, 326, 699
MaeIII GTNAC 3 cut(s) 148, 583, 590
MalI GATC 6 cut(s) 61, 318, 420, 426, 573, 1224
MbiI CCGCTC 1 cut(s) 283
MboI GATC 6 cut(s) 59, 316, 418, 424, 571, 1222
MboII GAAGA 5 cut(s) 73, 199, 430, 433, 725
MflI RGATCY 2 cut(s) 59, 418
MhlI GDGCHC 1 cut(s) 961
MluCI AATT 7 cut(s) 287, 504, 640, 796, 1009, 1052, 1177
MlyI GAGTC 2 cut(s) 191, 965
MmeI TCCRAC 1 cut(s) 219
Mph1103I ATGCAT 1 cut(s) 1204
MroI TCCGGA 1 cut(s) 421
MroXI GAANNNNTTC 4 cut(s) 361, 621, 1054, 1166
MseI TTAA 2 cut(s) 1092, 1248
MslI CAYNNNNRTG 2 cut(s) 826, 1214
MspA1I CMGCKG 1 cut(s) 740
MspI CCGG 4 cut(s) 248, 259, 354, 422
MspR9I CCNGG 1 cut(s) 936
Mva1269I GAATGC 1 cut(s) 1202
MvaI CCWGG 1 cut(s) 936
MwoI GCNNNNNNNGC 4 cut(s) 37, 346, 666, 737
NdeI CATATG 2 cut(s) 487, 929
NdeII GATC 6 cut(s) 59, 316, 418, 424, 571, 1222
NlaIII CATG 2 cut(s) 1213, 1244
NlaIV GGNNCC 2 cut(s) 27, 420
NmeAIII GCCGAG 1 cut(s) 366
NmuCI GTSAC 3 cut(s) 148, 583, 590
NsiI ATGCAT 1 cut(s) 1204
PciSI GCTCTTC 2 cut(s) 443, 738
PcsI WCGNNNNNNNCGW 2 cut(s) 29, 168
PctI GAATGC 1 cut(s) 1202
PdmI GAANNNNTTC 4 cut(s) 361, 621, 1054, 1166
PleI GAGTC 2 cut(s) 191, 965
PpsI GAGTC 2 cut(s) 191, 965
Psp1406I AACGTT 1 cut(s) 326
Psp6I CCWGG 1 cut(s) 934
PspGI CCWGG 1 cut(s) 934
PspN4I GGNNCC 2 cut(s) 27, 420
PspPI GGNCC 2 cut(s) 411, 1156
PsuI RGATCY 2 cut(s) 59, 418
PvuII CAGCTG 1 cut(s) 740
RsaI GTAC 3 cut(s) 481, 548, 717
RsaNI GTAC 3 cut(s) 480, 547, 716
RseI CAYNNNNRTG 2 cut(s) 826, 1214
Rsr2I CGGWCCG 1 cut(s) 411
RsrII CGGWCCG 1 cut(s) 411
SalI GTCGAC 1 cut(s) 161
SapI GCTCTTC 2 cut(s) 443, 738
SaqAI TTAA 2 cut(s) 1092, 1248
Sau3AI GATC 6 cut(s) 59, 316, 418, 424, 571, 1222
Sau96I GGNCC 2 cut(s) 411, 1156
ScaI AGTACT 1 cut(s) 717
SchI GAGTC 2 cut(s) 191, 965
ScrFI CCNGG 1 cut(s) 936
SduI GDGCHC 1 cut(s) 961
SfaNI GCATC 2 cut(s) 456, 1189
SinI GGWCC 2 cut(s) 411, 1156
SmiMI CAYNNNNRTG 2 cut(s) 826, 1214
SmlI CTYRAG 2 cut(s) 711, 1103
SmoI CTYRAG 2 cut(s) 711, 1103
Sse9I AATT 7 cut(s) 287, 504, 640, 796, 1009, 1052, 1177
SsiI CCGC 6 cut(s) 29, 153, 166, 283, 626, 1184
SspI AATATT 2 cut(s) 391, 1002
SspMI CTAG 1 cut(s) 666
StyD4I CCNGG 1 cut(s) 934
TaaI ACNGT 2 cut(s) 160, 956
TaiI ACGT 3 cut(s) 237, 329, 702
TaqI TCGA 2 cut(s) 162, 649
TaqII GACCGA 1 cut(s) 428
TasI AATT 7 cut(s) 287, 504, 640, 796, 1009, 1052, 1177
TatI WGTACW 1 cut(s) 715
Tru1I TTAA 2 cut(s) 1092, 1248
Tru9I TTAA 2 cut(s) 1092, 1248
TscAI CASTG 3 cut(s) 373, 961, 1178
TseFI GTSAC 3 cut(s) 148, 583, 590
Tsp45I GTSAC 3 cut(s) 148, 583, 590
TspDTI ATGAA 4 cut(s) 433, 474, 673, 1166
TspGWI ACGGA 4 cut(s) 112, 136, 534, 1085
TspRI CASTG 3 cut(s) 373, 961, 1178
VpaK11BI GGWCC 2 cut(s) 411, 1156
XapI RAATTY 5 cut(s) 287, 640, 796, 1052, 1177
XmiI GTMKAC 1 cut(s) 162
XmnI GAANNNNTTC 4 cut(s) 361, 621, 1054, 1166
XspI CTAG 1 cut(s) 666
ZraI GACGTC 1 cut(s) 700
ZrmI AGTACT 1 cut(s) 717
Zsp2I ATGCAT 1 cut(s) 1204
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.