pycom01g06890

Exostosin family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr1
OG0007378
Physical Location & Seq
Forward (+)
7427063 .. 7430080
3018 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom01g06890.1

Sequence Viewer

Length: 1269 bp
ATGAGTGTGGGCAAGCAAAAGCAATTCAAGTCGCCGTCGCTGTTGCAGTCGCCGTCGTCGTCGTCGTCTCCAATGTTGTGCTCTTTACAAGGATCTCTTTTGACTCTCGCCATCCTTACCTTGCTCTCCTTCATCTATTTCTCCCTCAATTCCCTCCATCCCTCCGCCTCCGCCTCCCCCACCACCGCCACCACCACTTACATCTCCTCCTCCGACGACGACGCAGACAATGAGCAGTTCTCCGACATCTACCACTCGCCGGAGGTGTTCCGGTTGAATTTCGCCGAGATGGAAGCCAAATTCAAGGTCTACATCTACCCGGACGGCGATCCGAACACGTTTTACCAGACGCCGAGGAAGCTCACCGGTAAGTACGCCAGCGAGGGCTATTTCTTTCAGAATATCAGAGAAAGTCACTTCCGAACCGACGATCCGGATCAGGCTCACCTCTTCTTCATCCCTATCTCCTCCCACAAAATGCGAGGCAAGGGTACATCTTATGAAAACATGACCATAATTGTTCGGGACTATGTGGAGAGCTTGATATCCAAGTATCCTTACTGGAACCGAACCTTGGGCGCTGACCACTTCTTTGTCACATGTCATGATGTTGGGGTGAGGGCAACCGAAGGGCTTCCACTTCTTGTGAAAAACTCAATTCGAGTTGTGTGCTCCCCTAGCTATGATGTTGGTTTCATTCCGCACAAAGATGTTGCCCTTCCTCAAGTACTTCAGCCATTTGCTCTTCCAGCCGGAGGAAACGATGTGGAGAACAGGACAACCCTCGGTTTTTGGGCCGGTCATCGGAACTCCAAAATTAGAGTTATACTGGCACGAGTATGGGAGAATGACACAGAGCTTTATATATTGAACAACAGAATAAACAGGGCAGAAGGGAATTTGTTATATCAAAGGAAGTTTTATGAAACCAAGTTCTGCATATGCCCTGGTGGCTCGCAGGTTAACAGTGCTCGCCCAACTGACTCAATCCATTATGGATGTATTCCTGTGATATTATCAAATTACTATGACCTTCCATTCAATGACATTCTCGATTGGCGAAAATTTGCTGTTATACTTACGGAGAAGGATGTATATCAACTTAAACAAATTCTTAAGGACATACCCTATTCAGAGTTTCTTACGCTTCACAAAAACTTGGTCAAGGTCCAGCAGCACTTCCAGTGGAATTCACCTCCTGTCAAATATGATGCATTTCACATGGTCATGTACGATCTTTGGTTGCGCCACCATGTGATCAAATACTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Exostosin

Protein Analysis

423

Amino Acids

48.46

Weight (kDa)

7.67

Isoelectric Point (pI)

47.25

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Exostosin_GT47 PF03016 98 - 374 3.3e-57 Exostosin GT47 domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 949
AccI GTMKAC 1 cut(s) 309
AccIII TCCGGA 1 cut(s) 433
AciI CCGC 4 cut(s) 165, 171, 186, 701
AclWI GGATC 4 cut(s) 100, 323, 425, 444
AcsI RAATTY 6 cut(s) 277, 299, 898, 1064, 1110, 1189
AcuI CTGAAG 1 cut(s) 716
AcyI GRCGYC 1 cut(s) 350
AdeI CACNNNGTG 1 cut(s) 1255
AfaI GTAC 4 cut(s) 374, 493, 729, 1232
AfiI CCNNNNNNNGG 4 cut(s) 259, 574, 755, 804
AflII CTTAAG 1 cut(s) 1115
AflIII ACRYGT 2 cut(s) 336, 599
AgeI ACCGGT 1 cut(s) 365
AgsI TTSAA 5 cut(s) 28, 277, 304, 871, 1042
AjnI CCWGG 1 cut(s) 946
AjuI GAANNNNNNNTTGG 2 cut(s) 557, 589
AloI GAACNNNNNNTCC 2 cut(s) 415, 447
AluBI AGCT 4 cut(s) 361, 540, 681, 859
AluI AGCT 4 cut(s) 361, 540, 681, 859
Alw21I GWGCWC 3 cut(s) 83, 674, 973
Alw26I GTCTC 1 cut(s) 72
AlwI GGATC 4 cut(s) 100, 323, 425, 444
Aor13HI TCCGGA 1 cut(s) 433
AoxI GGCC 1 cut(s) 795
ApeKI GCWGC 1 cut(s) 1174
ApoI RAATTY 6 cut(s) 277, 299, 898, 1064, 1110, 1189
ArsI GACNNNNNNTTYG 6 cut(s) 291, 323, 575, 607, 1146, 1178
AsiGI ACCGGT 1 cut(s) 365
Asp700I GAANNNNTTC 1 cut(s) 633
AspLEI GCGC 2 cut(s) 581, 1248
AspS9I GGNCC 2 cut(s) 795, 1168
AsuC2I CCSGG 1 cut(s) 320
AsuHPI GGTGA 4 cut(s) 355, 437, 628, 1185
AvaII GGWCC 1 cut(s) 1168
BauI CACGAG 1 cut(s) 834
Bbv12I GWGCWC 3 cut(s) 83, 674, 973
BbvI GCAGC 1 cut(s) 1186
BccI CCATC 3 cut(s) 119, 165, 283
BceAI ACGGC 3 cut(s) 19, 37, 340
BcgI CGANNNNNNTGC 2 cut(s) 651, 685
BciT130I CCWGG 1 cut(s) 948
BciVI GTATCC 1 cut(s) 564
BclI TGATCA 1 cut(s) 1257
BcnI CCSGG 1 cut(s) 320
BcoDI GTCTC 1 cut(s) 72
BfaI CTAG 1 cut(s) 678
BfoI RGCGCY 1 cut(s) 582
BfrI CTTAAG 1 cut(s) 1115
BfuAI ACCTGC 1 cut(s) 949
BfuI GTATCC 1 cut(s) 564
BglI GCCNNNNNGGC 1 cut(s) 951
BisI GCNGC 1 cut(s) 1175
BlsI GCNGC 1 cut(s) 1176
BmcAI AGTACT 1 cut(s) 729
Bme1390I CCNGG 2 cut(s) 320, 948
Bme18I GGWCC 1 cut(s) 1168
BmgT120I GGNCC 2 cut(s) 795, 1168
BmiI GGNNCC 1 cut(s) 566
BmrFI CCNGG 2 cut(s) 320, 948
BmsI GCATC 1 cut(s) 1201
BplI GAGNNNNNCTC 2 cut(s) 224, 256
BpuEI CTTGAG 1 cut(s) 708
BpuMI CCSGG 1 cut(s) 320
BsaBI GATNNNNATC 2 cut(s) 435, 1095
BsaHI GRCGYC 1 cut(s) 350
BsaJI CCNNGG 4 cut(s) 353, 573, 784, 946
BsaWI WCCGGW 3 cut(s) 270, 365, 433
BsaXI ACNNNNNCTCC 2 cut(s) 191, 221
Bsc4I CCNNNNNNNGG 4 cut(s) 259, 574, 755, 804
Bse118I RCCGGY 2 cut(s) 365, 797
Bse1I ACTGG 3 cut(s) 566, 834, 1183
Bse8I GATNNNNATC 2 cut(s) 435, 1095
BseAI TCCGGA 1 cut(s) 433
BseBI CCWGG 1 cut(s) 948
BseDI CCNNGG 4 cut(s) 353, 573, 784, 946
BseGI GGATG 5 cut(s) 111, 157, 456, 1004, 1096
BseJI GATNNNNATC 2 cut(s) 435, 1095
BseLI CCNNNNNNNGG 4 cut(s) 259, 574, 755, 804
BseNI ACTGG 3 cut(s) 566, 834, 1183
BseRI GAGGAG 3 cut(s) 196, 199, 457
BseXI GCAGC 1 cut(s) 1186
BshFI GGCC 1 cut(s) 797
BshTI ACCGGT 1 cut(s) 365
BsiHKAI GWGCWC 3 cut(s) 83, 674, 973
BsiSI CCGG 7 cut(s) 260, 271, 320, 366, 434, 753, 798
BslFI GGGAC 1 cut(s) 539
BslI CCNNNNNNNGG 4 cut(s) 259, 574, 755, 804
BsmAI GTCTC 1 cut(s) 72
BsmBI CGTCTC 1 cut(s) 72
BsmFI GGGAC 1 cut(s) 539
BsnI GGCC 1 cut(s) 797
Bsp1286I GDGCHC 3 cut(s) 83, 674, 973
Bsp13I TCCGGA 1 cut(s) 433
Bsp143I GATC 6 cut(s) 92, 328, 430, 436, 1234, 1257
BspACI CCGC 4 cut(s) 165, 171, 186, 701
BspANI GGCC 1 cut(s) 797
BspEI TCCGGA 1 cut(s) 433
BspHI TCATGA 1 cut(s) 604
BspLI GGNNCC 1 cut(s) 566
BspMI ACCTGC 1 cut(s) 949
BspPI GGATC 4 cut(s) 100, 323, 425, 444
BspQI GCTCTTC 1 cut(s) 750
BspTI CTTAAG 1 cut(s) 1115
BsrFI RCCGGY 2 cut(s) 365, 797
BsrI ACTGG 3 cut(s) 566, 834, 1183
BssAI RCCGGY 2 cut(s) 365, 797
BssECI CCNNGG 4 cut(s) 353, 573, 784, 946
BssMI GATC 6 cut(s) 92, 328, 430, 436, 1234, 1257
BssNI GRCGYC 1 cut(s) 350
BssSI CACGAG 1 cut(s) 834
BssT1I CCWWGG 1 cut(s) 573
Bst2BI CACGAG 1 cut(s) 834
Bst2UI CCWGG 1 cut(s) 948
Bst4CI ACNGT 1 cut(s) 968
Bst6I CTCTTC 2 cut(s) 455, 750
BstACI GRCGYC 1 cut(s) 350
BstAFI CTTAAG 1 cut(s) 1115
BstC8I GCNNGC 4 cut(s) 14, 379, 956, 973
BstF5I GGATG 5 cut(s) 111, 157, 456, 1004, 1096
BstH2I RGCGCY 1 cut(s) 582
BstHHI GCGC 2 cut(s) 581, 1248
BstKTI GATC 6 cut(s) 95, 331, 433, 439, 1237, 1260
BstMAI GTCTC 1 cut(s) 72
BstMBI GATC 6 cut(s) 92, 328, 430, 436, 1234, 1257
BstMWI GCNNNNNNNGC 4 cut(s) 358, 678, 749, 951
BstNI CCWGG 1 cut(s) 948
BstNSI RCATGY 1 cut(s) 603
BstSCI CCNGG 2 cut(s) 318, 946
BstV1I GCAGC 1 cut(s) 1186
BstX2I RGATCY 1 cut(s) 92
BstYI RGATCY 1 cut(s) 92
BsuI GTATCC 1 cut(s) 564
BsuRI GGCC 1 cut(s) 797
BtsCI GGATG 5 cut(s) 111, 157, 456, 1004, 1096
BtsIMutI CAGTG 2 cut(s) 973, 1190
BveI ACCTGC 1 cut(s) 949
Cac8I GCNNGC 4 cut(s) 14, 379, 956, 973
CciI TCATGA 1 cut(s) 604
CfoI GCGC 2 cut(s) 581, 1248
Cfr10I RCCGGY 2 cut(s) 365, 797
Cfr13I GGNCC 2 cut(s) 795, 1168
CseI GACGC 2 cut(s) 230, 358
Csp6I GTAC 4 cut(s) 373, 492, 728, 1231
CspAI ACCGGT 1 cut(s) 365
CviAII CATG 6 cut(s) 508, 600, 605, 1222, 1228, 1253
CviQI GTAC 4 cut(s) 373, 492, 728, 1231
DpnI GATC 6 cut(s) 94, 330, 432, 438, 1236, 1259
DpnII GATC 6 cut(s) 92, 328, 430, 436, 1234, 1257
DraIII CACNNNGTG 1 cut(s) 1255
Eam1104I CTCTTC 2 cut(s) 455, 750
EarI CTCTTC 2 cut(s) 455, 750
EciI GGCGGA 2 cut(s) 154, 160
Eco130I CCWWGG 1 cut(s) 573
Eco32I GATATC 1 cut(s) 546
Eco47I GGWCC 1 cut(s) 1168
Eco57I CTGAAG 1 cut(s) 716
EcoRI GAATTC 1 cut(s) 1189
EcoRII CCWGG 1 cut(s) 946
EcoRV GATATC 1 cut(s) 546
EcoT14I CCWWGG 1 cut(s) 573
EcoT22I ATGCAT 1 cut(s) 1216
ErhI CCWWGG 1 cut(s) 573
Esp3I CGTCTC 1 cut(s) 72
FaeI CATG 6 cut(s) 511, 603, 608, 1225, 1231, 1256
FalI AAGNNNNNCTT 2 cut(s) 81, 113
FaqI GGGAC 1 cut(s) 539
FatI CATG 6 cut(s) 507, 599, 604, 1221, 1227, 1252
FauNDI CATATG 1 cut(s) 941
FbaI TGATCA 1 cut(s) 1257
FblI GTMKAC 1 cut(s) 309
Fnu4HI GCNGC 1 cut(s) 1175
FokI GGATG 5 cut(s) 98, 144, 443, 1011, 1103
Fsp4HI GCNGC 1 cut(s) 1175
FspBI CTAG 1 cut(s) 678
GlaI GCGC 2 cut(s) 580, 1247
GluI GCNGC 1 cut(s) 1175
HaeII RGCGCY 1 cut(s) 582
HaeIII GGCC 1 cut(s) 797
HapII CCGG 7 cut(s) 260, 271, 320, 366, 434, 753, 798
HgaI GACGC 2 cut(s) 230, 358
HhaI GCGC 2 cut(s) 581, 1248
Hin1I GRCGYC 1 cut(s) 350
Hin1II CATG 6 cut(s) 511, 603, 608, 1225, 1231, 1256
Hin6I GCGC 2 cut(s) 579, 1246
HinP1I GCGC 2 cut(s) 579, 1246
HincII GTYRAC 1 cut(s) 964
HindII GTYRAC 1 cut(s) 964
HinfI GANTC 2 cut(s) 103, 983
HpaI GTTAAC 1 cut(s) 964
HpaII CCGG 7 cut(s) 260, 271, 320, 366, 434, 753, 798
HphI GGTGA 4 cut(s) 355, 437, 628, 1185
Hpy166II GTNNAC 2 cut(s) 310, 964
Hpy188I TCNGA 8 cut(s) 214, 244, 333, 399, 407, 422, 807, 1135
Hpy188III TCNNGA 4 cut(s) 434, 524, 605, 1052
Hpy8I GTNNAC 2 cut(s) 310, 964
Hpy99I CGWCG 9 cut(s) 40, 58, 61, 64, 67, 218, 221, 224, 431
HpyAV CCTTC 6 cut(s) 139, 623, 728, 887, 1043, 1081
HpyCH4III ACNGT 1 cut(s) 968
HpyCH4IV ACGT 1 cut(s) 338
HpyCH4V TGCA 3 cut(s) 46, 939, 1214
HpyF10VI GCNNNNNNNGC 4 cut(s) 358, 678, 749, 951
HpySE526I ACGT 1 cut(s) 338
Hsp92I GRCGYC 1 cut(s) 350
Hsp92II CATG 6 cut(s) 511, 603, 608, 1225, 1231, 1256
HspAI GCGC 2 cut(s) 579, 1246
Kpn2I TCCGGA 1 cut(s) 433
Ksp22I TGATCA 1 cut(s) 1257
KspAI GTTAAC 1 cut(s) 964
Kzo9I GATC 6 cut(s) 92, 328, 430, 436, 1234, 1257
LguI GCTCTTC 1 cut(s) 750
LmnI GCTCC 1 cut(s) 677
Lsp1109I GCAGC 1 cut(s) 1186
LweI GCATC 1 cut(s) 1201
MaeI CTAG 1 cut(s) 678
MaeII ACGT 1 cut(s) 338
MaeIII GTNAC 2 cut(s) 413, 595
MalI GATC 6 cut(s) 94, 330, 432, 438, 1236, 1259
MboI GATC 6 cut(s) 92, 328, 430, 436, 1234, 1257
MboII GAAGA 3 cut(s) 442, 445, 737
MflI RGATCY 1 cut(s) 92
MhlI GDGCHC 3 cut(s) 83, 674, 973
MlyI GAGTC 2 cut(s) 97, 977
MmeI TCCRAC 2 cut(s) 237, 267
Mph1103I ATGCAT 1 cut(s) 1216
MroI TCCGGA 1 cut(s) 433
MroXI GAANNNNTTC 1 cut(s) 633
MseI TTAA 3 cut(s) 963, 1104, 1116
MslI CAYNNNNRTG 3 cut(s) 708, 838, 1226
MspCI CTTAAG 1 cut(s) 1115
MspI CCGG 7 cut(s) 260, 271, 320, 366, 434, 753, 798
MspR9I CCNGG 2 cut(s) 320, 948
MvaI CCWGG 1 cut(s) 948
MwoI GCNNNNNNNGC 4 cut(s) 358, 678, 749, 951
NciI CCSGG 1 cut(s) 320
NdeI CATATG 1 cut(s) 941
NdeII GATC 6 cut(s) 92, 328, 430, 436, 1234, 1257
NlaIII CATG 6 cut(s) 511, 603, 608, 1225, 1231, 1256
NlaIV GGNNCC 1 cut(s) 566
NmeAIII GCCGAG 2 cut(s) 310, 378
NmuCI GTSAC 2 cut(s) 413, 595
NsiI ATGCAT 1 cut(s) 1216
NspI RCATGY 1 cut(s) 603
PagI TCATGA 1 cut(s) 604
PciI ACATGT 1 cut(s) 599
PciSI GCTCTTC 1 cut(s) 750
PcsI WCGNNNNNNNCGW 2 cut(s) 56, 62
PdmI GAANNNNTTC 1 cut(s) 633
PinAI ACCGGT 1 cut(s) 365
PkrI GCNGC 1 cut(s) 1176
PleI GAGTC 2 cut(s) 97, 977
PpsI GAGTC 2 cut(s) 97, 977
PscI ACATGT 1 cut(s) 599
Psp6I CCWGG 1 cut(s) 946
PspGI CCWGG 1 cut(s) 946
PspN4I GGNNCC 1 cut(s) 566
PspPI GGNCC 2 cut(s) 795, 1168
PsrI GAACNNNNNNTAC 2 cut(s) 326, 358
PsuI RGATCY 1 cut(s) 92
RsaI GTAC 4 cut(s) 374, 493, 729, 1232
RsaNI GTAC 4 cut(s) 373, 492, 728, 1231
RseI CAYNNNNRTG 3 cut(s) 708, 838, 1226
SapI GCTCTTC 1 cut(s) 750
SaqAI TTAA 3 cut(s) 963, 1104, 1116
SatI GCNGC 1 cut(s) 1175
Sau3AI GATC 6 cut(s) 92, 328, 430, 436, 1234, 1257
Sau96I GGNCC 2 cut(s) 795, 1168
ScaI AGTACT 1 cut(s) 729
SchI GAGTC 2 cut(s) 97, 977
ScrFI CCNGG 2 cut(s) 320, 948
SduI GDGCHC 3 cut(s) 83, 674, 973
SfaNI GCATC 1 cut(s) 1201
SinI GGWCC 1 cut(s) 1168
SmiMI CAYNNNNRTG 3 cut(s) 708, 838, 1226
SmlI CTYRAG 2 cut(s) 723, 1115
SmoI CTYRAG 2 cut(s) 723, 1115
SsiI CCGC 4 cut(s) 165, 171, 186, 701
SspMI CTAG 1 cut(s) 678
StyD4I CCNGG 2 cut(s) 318, 946
StyI CCWWGG 1 cut(s) 573
TaaI ACNGT 1 cut(s) 968
TaiI ACGT 1 cut(s) 341
TaqI TCGA 2 cut(s) 661, 1053
TatI WGTACW 1 cut(s) 727
Tru1I TTAA 3 cut(s) 963, 1104, 1116
Tru9I TTAA 3 cut(s) 963, 1104, 1116
TscAI CASTG 2 cut(s) 973, 1190
TseFI GTSAC 2 cut(s) 413, 595
TseI GCWGC 1 cut(s) 1174
Tsp45I GTSAC 2 cut(s) 413, 595
TspDTI ATGAA 5 cut(s) 121, 445, 516, 685, 939
TspGWI ACGGA 1 cut(s) 1097
TspRI CASTG 2 cut(s) 973, 1190
Vha464I CTTAAG 1 cut(s) 1115
VpaK11BI GGWCC 1 cut(s) 1168
XapI RAATTY 6 cut(s) 277, 299, 898, 1064, 1110, 1189
XceI RCATGY 1 cut(s) 603
XmiI GTMKAC 1 cut(s) 309
XmnI GAANNNNTTC 1 cut(s) 633
XspI CTAG 1 cut(s) 678
ZrmI AGTACT 1 cut(s) 729
Zsp2I ATGCAT 1 cut(s) 1216
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.