FvH4_1g19330

Exostosin family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb1
OG0007378
Physical Location & Seq
Forward (+)
11562990 .. 11566872
3883 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_1g19330.t2

Sequence Viewer

Length: 1272 bp
ATGAGTTTGGGCAAGCTGTCACCGGCACCGCCGTCGTCACCGATGTTCTCCTTACGAGGATCTCTCATAACTCTCGCCTTCTTCACCTTACTCTCCCTCGCCTACTTCTCCGTCAACTTCTCCGTCTCCTCCGCACCTCCCCCTCCCGTCTCCGCCACCGTCAACAACGCCGTCAGGCAGCAAACCGCTCCCGGTGACCTGAATCAGTTGCCGGAGGAGAATGAGAACGAGAACGAGGAGTTTTCAGACATTTACCACTCGCCGGAGGTGTTCCGGTTGAACTACGCCGAAATGGAGCGGAAATTCAAGGTGTATATATACCCCGACGGCGATCCGAAGACGTTTTACCAGACGCCGAGGAAGCTCACCGGAAAATATTCCAGTGAGGGATATTTCTTTCAGAATATTAGAGAGGGGAGGTTTCGGACTGAGGATCCGGATCAGGCTCACCTCTTCTTCATTCCTATCTCCTGCCACAAGATGCGAGGCAAGGGTACTTCGTATGAGAATATGACCATAATTGTTCAGAACTATGTGGAGAGCTTGATAGCCAAGTATCCGTACTGGAACAGGACTTTGGGTGCAGATCACTTCTTTGTGACCTGTCATGATGTTGGTGTGAGGGCAACTGAAGGACTTCCGCTTCTTGTAAAGAATTCTATTAGAGTTGTCTGCTCCCCTAGCTACGATGTTGGCTTCATTCCACATAAGGATGTTGCTCTTCCTCAAGTCCTGCAACCGTTTGCTCTTCCAGCTGGAGGAAATGATGTCGAGAACAGGACAACACTTGGTTTTTGGGCTGGTCATCGGAATTCAAAGATTAGAGTTATACTGGCACGAGTTTGGGAGAATGACACAGAACTTTACATCTTGAACAACAGAATAAGTAGGGCAGAAGGGAATTTGTTATATCAAAAGAAGTTCTATACTACCAAGTTCTGCATATGCCCTGGTGGTTCCCAGGTTAACAGTGCTCGCCCAACGGACTCAATCCATTATGGCTGTATTCCTGTAATATTATCAAATTACTATGACCTGCCGTTCAATGACATTCTTGACTGGCGAAAATTTGCTGTCATACTTACGGAGAAGGATGTGTTTCAGCTTAAACATATACTCAAGGCCATACCCTATTCAGATTTTTTAACACTTCACAAAAACTTGGTGAAGGTCCAGAAACACTTCCAGTGGAATTCACCGCCCATCAAATATGATGCATTCCACATGGTAATGTATGATCTTTGGTTGCGCCACCATGTTATCAAATACTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Exostosin

Protein Analysis

424

Amino Acids

48.62

Weight (kDa)

8.67

Isoelectric Point (pI)

48.08

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Exostosin_GT47 PF03016 99 - 375 9e-57 Exostosin GT47 domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 1044
AccB1I GGYRCC 1 cut(s) 25
AccBSI CCGCTC 2 cut(s) 188, 298
AccIII TCCGGA 1 cut(s) 436
AciI CCGC 7 cut(s) 29, 132, 153, 186, 298, 641, 1199
AclWI GGATC 5 cut(s) 67, 326, 428, 441, 447
AcsI RAATTY 6 cut(s) 302, 655, 811, 901, 1067, 1192
AcuI CTGAAG 1 cut(s) 651
AcyI GRCGYC 1 cut(s) 353
AfaI GTAC 2 cut(s) 496, 563
AfiI CCNNNNNNNGG 2 cut(s) 262, 758
AgsI TTSAA 5 cut(s) 280, 307, 816, 874, 1045
AjnI CCWGG 2 cut(s) 949, 960
AjuI GAANNNNNNNTTGG 2 cut(s) 560, 592
AluBI AGCT 6 cut(s) 16, 364, 543, 684, 755, 1105
AluI AGCT 6 cut(s) 16, 364, 543, 684, 755, 1105
Alw21I GWGCWC 1 cut(s) 976
Alw26I GTCTC 2 cut(s) 130, 154
AlwI GGATC 5 cut(s) 67, 326, 428, 441, 447
Aor13HI TCCGGA 1 cut(s) 436
AoxI GGCC 1 cut(s) 1122
ApeKI GCWGC 1 cut(s) 178
ApoI RAATTY 6 cut(s) 302, 655, 811, 901, 1067, 1192
Asp700I GAANNNNTTC 3 cut(s) 376, 636, 1181
AspLEI GCGC 1 cut(s) 1251
AspS9I GGNCC 1 cut(s) 1171
AsuC2I CCSGG 1 cut(s) 192
AsuHPI GGTGA 8 cut(s) 12, 30, 76, 206, 358, 440, 1177, 1188
AvaII GGWCC 1 cut(s) 1171
BamHI GGATCC 1 cut(s) 433
BanI GGYRCC 1 cut(s) 25
BarI GAAGNNNNNNTAC 2 cut(s) 329, 361
BauI CACGAG 1 cut(s) 837
BbsI GAAGAC 1 cut(s) 344
Bbv12I GWGCWC 1 cut(s) 976
BbvI GCAGC 1 cut(s) 190
BccI CCATC 1 cut(s) 1211
BceAI ACGGC 4 cut(s) 16, 155, 343, 1024
BcgI CGANNNNNNTGC 2 cut(s) 15, 49
BciT130I CCWGG 2 cut(s) 951, 962
BciVI GTATCC 1 cut(s) 567
BcnI CCSGG 1 cut(s) 192
BcoDI GTCTC 2 cut(s) 130, 154
BfaI CTAG 1 cut(s) 681
BfuAI ACCTGC 1 cut(s) 1044
BfuI GTATCC 1 cut(s) 567
BisI GCNGC 1 cut(s) 179
BlsI GCNGC 1 cut(s) 180
Bme1390I CCNGG 3 cut(s) 192, 951, 962
Bme18I GGWCC 1 cut(s) 1171
BmgT120I GGNCC 1 cut(s) 1171
BmiI GGNNCC 3 cut(s) 27, 435, 958
BmrFI CCNGG 3 cut(s) 192, 951, 962
BmsI GCATC 2 cut(s) 471, 1204
BpiI GAAGAC 1 cut(s) 344
BplI GAGNNNNNCTC 2 cut(s) 48, 80
BpmI CTGGAG 1 cut(s) 777
BpuEI CTTGAG 2 cut(s) 711, 1103
BpuMI CCSGG 1 cut(s) 192
BsaBI GATNNNNATC 1 cut(s) 438
BsaHI GRCGYC 1 cut(s) 353
BsaJI CCNNGG 3 cut(s) 356, 949, 960
BsaWI WCCGGW 3 cut(s) 273, 368, 436
Bsc4I CCNNNNNNNGG 2 cut(s) 262, 758
Bse118I RCCGGY 1 cut(s) 22
Bse1I ACTGG 5 cut(s) 381, 569, 837, 1064, 1186
Bse8I GATNNNNATC 1 cut(s) 438
BseAI TCCGGA 1 cut(s) 436
BseBI CCWGG 2 cut(s) 951, 962
BseDI CCNNGG 3 cut(s) 356, 949, 960
BseGI GGATG 2 cut(s) 718, 1099
BseJI GATNNNNATC 1 cut(s) 438
BseLI CCNNNNNNNGG 2 cut(s) 262, 758
BseMII CTCAG 1 cut(s) 420
BseNI ACTGG 5 cut(s) 381, 569, 837, 1064, 1186
BseRI GAGGAG 3 cut(s) 118, 230, 251
BseXI GCAGC 1 cut(s) 190
BsgI GTGCAG 1 cut(s) 603
BshFI GGCC 1 cut(s) 1124
BshNI GGYRCC 1 cut(s) 25
BsiHKAI GWGCWC 1 cut(s) 976
BsiSI CCGG 7 cut(s) 23, 192, 212, 263, 274, 369, 437
BslI CCNNNNNNNGG 2 cut(s) 262, 758
BsmAI GTCTC 2 cut(s) 130, 154
BsmBI CGTCTC 2 cut(s) 130, 154
BsmI GAATGC 1 cut(s) 1217
BsnI GGCC 1 cut(s) 1124
Bsp1286I GDGCHC 1 cut(s) 976
Bsp13I TCCGGA 1 cut(s) 436
Bsp143I GATC 6 cut(s) 59, 331, 433, 439, 586, 1237
BspACI CCGC 7 cut(s) 29, 132, 153, 186, 298, 641, 1199
BspANI GGCC 1 cut(s) 1124
BspCNI CTCAG 1 cut(s) 421
BspEI TCCGGA 1 cut(s) 436
BspHI TCATGA 1 cut(s) 607
BspLI GGNNCC 3 cut(s) 27, 435, 958
BspMI ACCTGC 1 cut(s) 1044
BspPI GGATC 5 cut(s) 67, 326, 428, 441, 447
BspQI GCTCTTC 2 cut(s) 726, 753
BspT107I GGYRCC 1 cut(s) 25
BsrBI CCGCTC 2 cut(s) 188, 298
BsrFI RCCGGY 1 cut(s) 22
BsrI ACTGG 5 cut(s) 381, 569, 837, 1064, 1186
BssAI RCCGGY 1 cut(s) 22
BssECI CCNNGG 3 cut(s) 356, 949, 960
BssMI GATC 6 cut(s) 59, 331, 433, 439, 586, 1237
BssNI GRCGYC 1 cut(s) 353
BssSI CACGAG 1 cut(s) 837
Bst2BI CACGAG 1 cut(s) 837
Bst2UI CCWGG 2 cut(s) 951, 962
Bst4CI ACNGT 3 cut(s) 160, 741, 971
Bst6I CTCTTC 3 cut(s) 458, 726, 753
BstACI GRCGYC 1 cut(s) 353
BstC8I GCNNGC 2 cut(s) 14, 976
BstDEI CTNAG 1 cut(s) 429
BstEII GGTNACC 1 cut(s) 194
BstF5I GGATG 2 cut(s) 718, 1099
BstHHI GCGC 1 cut(s) 1251
BstKTI GATC 6 cut(s) 62, 334, 436, 442, 589, 1240
BstMAI GTCTC 2 cut(s) 130, 154
BstMBI GATC 6 cut(s) 59, 331, 433, 439, 586, 1237
BstMWI GCNNNNNNNGC 3 cut(s) 361, 681, 752
BstNI CCWGG 2 cut(s) 951, 962
BstPI GGTNACC 1 cut(s) 194
BstSCI CCNGG 3 cut(s) 190, 949, 960
BstV1I GCAGC 1 cut(s) 190
BstV2I GAAGAC 1 cut(s) 344
BstX2I RGATCY 2 cut(s) 59, 433
BstYI RGATCY 2 cut(s) 59, 433
BsuI GTATCC 1 cut(s) 567
BsuRI GGCC 1 cut(s) 1124
BtsCI GGATG 2 cut(s) 718, 1099
BtsIMutI CAGTG 3 cut(s) 388, 976, 1193
BveI ACCTGC 1 cut(s) 1044
Cac8I GCNNGC 2 cut(s) 14, 976
CciI TCATGA 1 cut(s) 607
CfoI GCGC 1 cut(s) 1251
Cfr10I RCCGGY 1 cut(s) 22
Cfr13I GGNCC 1 cut(s) 1171
CseI GACGC 1 cut(s) 361
Csp6I GTAC 2 cut(s) 495, 562
CviAII CATG 3 cut(s) 608, 1225, 1256
CviQI GTAC 2 cut(s) 495, 562
DdeI CTNAG 1 cut(s) 429
DpnI GATC 6 cut(s) 61, 333, 435, 441, 588, 1239
DpnII GATC 6 cut(s) 59, 331, 433, 439, 586, 1237
Eam1104I CTCTTC 3 cut(s) 458, 726, 753
EarI CTCTTC 3 cut(s) 458, 726, 753
EciI GGCGGA 1 cut(s) 142
Eco47I GGWCC 1 cut(s) 1171
Eco57I CTGAAG 1 cut(s) 651
Eco91I GGTNACC 1 cut(s) 194
EcoO65I GGTNACC 1 cut(s) 194
EcoRI GAATTC 3 cut(s) 655, 811, 1192
EcoRII CCWGG 2 cut(s) 949, 960
EcoT22I ATGCAT 1 cut(s) 1219
Esp3I CGTCTC 2 cut(s) 130, 154
FaeI CATG 3 cut(s) 611, 1228, 1259
FatI CATG 3 cut(s) 607, 1224, 1255
FauNDI CATATG 1 cut(s) 944
Fnu4HI GCNGC 1 cut(s) 179
FokI GGATG 2 cut(s) 725, 1106
Fsp4HI GCNGC 1 cut(s) 179
FspBI CTAG 1 cut(s) 681
GlaI GCGC 1 cut(s) 1250
GluI GCNGC 1 cut(s) 179
GsuI CTGGAG 1 cut(s) 777
HaeIII GGCC 1 cut(s) 1124
HapII CCGG 7 cut(s) 23, 192, 212, 263, 274, 369, 437
HgaI GACGC 1 cut(s) 361
HhaI GCGC 1 cut(s) 1251
Hin1I GRCGYC 1 cut(s) 353
Hin1II CATG 3 cut(s) 611, 1228, 1259
Hin6I GCGC 1 cut(s) 1249
HinP1I GCGC 1 cut(s) 1249
HincII GTYRAC 3 cut(s) 115, 163, 967
HindII GTYRAC 3 cut(s) 115, 163, 967
HinfI GANTC 2 cut(s) 202, 986
HpaI GTTAAC 1 cut(s) 967
HpaII CCGG 7 cut(s) 23, 192, 212, 263, 274, 369, 437
HphI GGTGA 8 cut(s) 12, 30, 76, 206, 358, 440, 1177, 1188
Hpy166II GTNNAC 3 cut(s) 115, 163, 967
Hpy188I TCNGA 7 cut(s) 247, 336, 402, 426, 528, 810, 1138
Hpy188III TCNNGA 6 cut(s) 437, 608, 772, 871, 1055, 1174
Hpy8I GTNNAC 3 cut(s) 115, 163, 967
Hpy99I CGWCG 2 cut(s) 37, 329
HpyAV CCTTC 5 cut(s) 88, 626, 890, 1084, 1162
HpyCH4III ACNGT 3 cut(s) 160, 741, 971
HpyCH4IV ACGT 1 cut(s) 341
HpyCH4V TGCA 4 cut(s) 584, 736, 942, 1217
HpyF10VI GCNNNNNNNGC 3 cut(s) 361, 681, 752
HpyF3I CTNAG 1 cut(s) 429
HpySE526I ACGT 1 cut(s) 341
Hsp92I GRCGYC 1 cut(s) 353
Hsp92II CATG 3 cut(s) 611, 1228, 1259
HspAI GCGC 1 cut(s) 1249
Kpn2I TCCGGA 1 cut(s) 436
KspAI GTTAAC 1 cut(s) 967
Kzo9I GATC 6 cut(s) 59, 331, 433, 439, 586, 1237
LguI GCTCTTC 2 cut(s) 726, 753
LmnI GCTCC 3 cut(s) 193, 295, 680
Lsp1109I GCAGC 1 cut(s) 190
LweI GCATC 2 cut(s) 471, 1204
MaeI CTAG 1 cut(s) 681
MaeII ACGT 1 cut(s) 341
MaeIII GTNAC 4 cut(s) 18, 36, 194, 598
MalI GATC 6 cut(s) 61, 333, 435, 441, 588, 1239
MbiI CCGCTC 2 cut(s) 188, 298
MboI GATC 6 cut(s) 59, 331, 433, 439, 586, 1237
MboII GAAGA 6 cut(s) 73, 349, 445, 448, 713, 740
MflI RGATCY 2 cut(s) 59, 433
MhlI GDGCHC 1 cut(s) 976
MluCI AATT 8 cut(s) 302, 519, 655, 811, 901, 1024, 1067, 1192
MlyI GAGTC 1 cut(s) 980
Mph1103I ATGCAT 1 cut(s) 1219
MroI TCCGGA 1 cut(s) 436
MroXI GAANNNNTTC 3 cut(s) 376, 636, 1181
MseI TTAA 3 cut(s) 966, 1107, 1145
MslI CAYNNNNRTG 2 cut(s) 711, 1229
MspA1I CMGCKG 1 cut(s) 755
MspI CCGG 7 cut(s) 23, 192, 212, 263, 274, 369, 437
MspR9I CCNGG 3 cut(s) 192, 951, 962
Mva1269I GAATGC 1 cut(s) 1217
MvaI CCWGG 2 cut(s) 951, 962
MwoI GCNNNNNNNGC 3 cut(s) 361, 681, 752
NciI CCSGG 1 cut(s) 192
NdeI CATATG 1 cut(s) 944
NdeII GATC 6 cut(s) 59, 331, 433, 439, 586, 1237
NlaIII CATG 3 cut(s) 611, 1228, 1259
NlaIV GGNNCC 3 cut(s) 27, 435, 958
NmeAIII GCCGAG 1 cut(s) 381
NmuCI GTSAC 4 cut(s) 18, 36, 194, 598
NsiI ATGCAT 1 cut(s) 1219
PagI TCATGA 1 cut(s) 607
PciSI GCTCTTC 2 cut(s) 726, 753
PctI GAATGC 1 cut(s) 1217
PdmI GAANNNNTTC 3 cut(s) 376, 636, 1181
PfeI GAWTC 1 cut(s) 202
PkrI GCNGC 1 cut(s) 180
PleI GAGTC 1 cut(s) 980
PpsI GAGTC 1 cut(s) 980
Psp6I CCWGG 2 cut(s) 949, 960
PspEI GGTNACC 1 cut(s) 194
PspGI CCWGG 2 cut(s) 949, 960
PspN4I GGNNCC 3 cut(s) 27, 435, 958
PspPI GGNCC 1 cut(s) 1171
PsuI RGATCY 2 cut(s) 59, 433
PvuII CAGCTG 1 cut(s) 755
RsaI GTAC 2 cut(s) 496, 563
RsaNI GTAC 2 cut(s) 495, 562
RseI CAYNNNNRTG 2 cut(s) 711, 1229
SapI GCTCTTC 2 cut(s) 726, 753
SaqAI TTAA 3 cut(s) 966, 1107, 1145
SatI GCNGC 1 cut(s) 179
Sau3AI GATC 6 cut(s) 59, 331, 433, 439, 586, 1237
Sau96I GGNCC 1 cut(s) 1171
SchI GAGTC 1 cut(s) 980
ScrFI CCNGG 3 cut(s) 192, 951, 962
SduI GDGCHC 1 cut(s) 976
SfaNI GCATC 2 cut(s) 471, 1204
SinI GGWCC 1 cut(s) 1171
SmiMI CAYNNNNRTG 2 cut(s) 711, 1229
SmlI CTYRAG 2 cut(s) 726, 1118
SmoI CTYRAG 2 cut(s) 726, 1118
Sse9I AATT 8 cut(s) 302, 519, 655, 811, 901, 1024, 1067, 1192
SsiI CCGC 7 cut(s) 29, 132, 153, 186, 298, 641, 1199
SspI AATATT 3 cut(s) 377, 406, 1017
SspMI CTAG 1 cut(s) 681
StyD4I CCNGG 3 cut(s) 190, 949, 960
TaaI ACNGT 3 cut(s) 160, 741, 971
TaiI ACGT 1 cut(s) 344
TaqI TCGA 1 cut(s) 771
TasI AATT 8 cut(s) 302, 519, 655, 811, 901, 1024, 1067, 1192
TfiI GAWTC 1 cut(s) 202
Tru1I TTAA 3 cut(s) 966, 1107, 1145
Tru9I TTAA 3 cut(s) 966, 1107, 1145
TscAI CASTG 3 cut(s) 388, 976, 1193
TseFI GTSAC 4 cut(s) 18, 36, 194, 598
TseI GCWGC 1 cut(s) 178
Tsp45I GTSAC 4 cut(s) 18, 36, 194, 598
TspDTI ATGAA 2 cut(s) 448, 688
TspGWI ACGGA 5 cut(s) 100, 112, 549, 998, 1100
TspRI CASTG 3 cut(s) 388, 976, 1193
VpaK11BI GGWCC 1 cut(s) 1171
XapI RAATTY 6 cut(s) 302, 655, 811, 901, 1067, 1192
XmnI GAANNNNTTC 3 cut(s) 376, 636, 1181
XspI CTAG 1 cut(s) 681
Zsp2I ATGCAT 1 cut(s) 1219
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.