Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp06

Orthogroup ID

OG0007378

Physical Location & Seq

Genomic Coordinates Reverse (-)

21291920 .. 21295837

Gene Structure 3918 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.6G204800.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1215 bp

ATGAGTTTGGGCAAGCAATCGCAACCGCACTCACAGTCGTCTTCTCCGATGTTGTTCTCTTTACAGGGATCGCTATTGACTCTCGCCATCTTCACTTTGCTTTCCTTCATCTACTTCTCTCTCAATTCCGTCCATTTCTCCTCCTCCCCCACCATTCACATCTCGGCCGATACAAATGAGCAGTTTTCCGATATCTACCACTCGCCGGAGGTGTTTCGGTTGAATTTCGCCGAGATGGAAGCGAAATTCAAGGTCTACATATACCCCGACGGCGATCCAAAGACGTATTACCAGACGCCCAGGAAGCTCACTGGCAAGTACGCCAGCGAGGGCTACTTCTTCCAGAATATCAGAGAGAGTCGGTTCCGTACGGACGATCCGGATCAAGCTCACCTCTTCTTCATCCCTATATCCTGCCACAAGATGCGAGGCAAGAATACAACTTATGACGAAATGACCGTGATTGTTCGGGACTATGTGGAGAGCTTGATATTCAAGTATCCTTACTGGAACCGAACCCTGGGTGCGGACCACTTCTTTGTCACGTGTCATGATGTTGGGGTGAGGGCAACAGAAGGATTTCCACTTCTTGTAAAGAATTCGATTCGAGTTGTGTGCTCCCCTAGCTATGACGTTGGGTTCATTCCACACAAAGATGTTGCCCTTCCTCAAGTACTCCAGCCATTTGCTCTTCCAGCTGGAGGAAATGATGTGGAAAACAGGACAACCCTCGGTTTTTGGGCCGGTCATAGGAACTCCAAAATTAGAGTTATACTGGCACGAGTATGGGAGAATGACACAGAACTTTACATATTGAACAACAGAATAAATAGGGCTGAAGGGAATTTGTTATATCAAAAGAAATTTTACAACACCAAGTTCTGCATATGTCCTGGCGGTTCCCAGGTTAACAGCGCTCGTATAACTGACTCAATCCATTATGGATGTATTCCTGTAATATTATCAAATTACTATGACCTGCCGTTCAATGACATTCTCGATTGGCGAAAATTTGCTGTCATACTTACTGAGAAGGATGTGTATAACCTTAAACAAAGTCTTAAGGATATACCGTATTCAGAGTTTCTTACACTTCACAAAAACTTGGTTAAGGTCCAGCAGCACTTCCAGTGGAATTCACCGCCCGTCAAATATGATGCATTCCACATGGTCATGTACGATCTTTGGTTGCGCCACCATGTTATCAAATACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Exostosin

Protein Analysis

405

Amino Acids

46.94

Weight (kDa)

8.53

Isoelectric Point (pI)

48.23

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007378)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G38040 AT4G38040
fragaria_vesca	FvH4_1g19330 FvH4_1g19330 FvH4_1g19330
malus_domestica	MD01G1041200.v1.1 MD15G1310000.v1.1
prunus_persica	Prupe.6G204800_v2.0.a1 Prupe.6G204800_v2.0.a1
pyrus_communis	pycom01g06890 pycom15g27410
rosa_chinensis	RchiOBHm_Chr2g0110701 RchiOBHm_Chr4g0406901
rosa_laevigata	RLG00000017833 RLG00000021049
rosa_multiflora	Rmu_co8143526.1_g000001 Rmu_sc0023099.1_g000001
rosa_roxburghii	Rroxscaffold_2G00133010
rosa_rugosa	Rorug02G0169000
rosa_samantha	Rh2AG221200 Rh2BG231300 Rh2CG223600 Rh2DG227400 Rh6AG202800
rosa_wichuraiana	Rw2G017070

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	987
AccI	GTMKAC	1 cut(s)	255
AccIII	TCCGGA	1 cut(s)	379
AciI	CCGC	4 cut(s)	26, 527, 897, 1142
AclWI	GGATC	4 cut(s)	76, 269, 371, 390
AcoI	YGGCCR	1 cut(s)	165
AcsI	RAATTY	7 cut(s)	223, 245, 598, 844, 863, 1010, 1135
AcuI	CTGAAG	1 cut(s)	858
AcvI	CACGTG	1 cut(s)	546
AcyI	GRCGYC	1 cut(s)	296
AfaI	GTAC	4 cut(s)	320, 370, 675, 1178
AfeI	AGCGCT	1 cut(s)	916
AfiI	CCNNNNNNNGG	5 cut(s)	205, 520, 526, 701, 750
AflII	CTTAAG	1 cut(s)	1061
AflIII	ACRYGT	1 cut(s)	545
AgsI	TTSAA	5 cut(s)	223, 250, 496, 817, 988
AjnI	CCWGG	4 cut(s)	299, 519, 892, 903
AluBI	AGCT	5 cut(s)	307, 389, 486, 627, 698
AluI	AGCT	5 cut(s)	307, 389, 486, 627, 698
Alw21I	GWGCWC	1 cut(s)	620
AlwI	GGATC	4 cut(s)	76, 269, 371, 390
Aor13HI	TCCGGA	1 cut(s)	379
Aor51HI	AGCGCT	1 cut(s)	916
AoxI	GGCC	2 cut(s)	165, 741
ApeKI	GCWGC	1 cut(s)	1120
ApoI	RAATTY	7 cut(s)	223, 245, 598, 844, 863, 1010, 1135
ArsI	GACNNNNNNTTYG	2 cut(s)	521, 553
Asp700I	GAANNNNTTC	1 cut(s)	579
AspLEI	GCGC	2 cut(s)	917, 1194
AspS9I	GGNCC	3 cut(s)	529, 741, 1114
AsuHPI	GGTGA	3 cut(s)	383, 574, 1131
AvaII	GGWCC	2 cut(s)	529, 1114
BauI	CACGAG	1 cut(s)	780
BbrPI	CACGTG	1 cut(s)	546
BbsI	GAAGAC	1 cut(s)	33
Bbv12I	GWGCWC	1 cut(s)	620
BbvI	GCAGC	1 cut(s)	1132
BccI	CCATC	2 cut(s)	95, 229
BceAI	ACGGC	2 cut(s)	286, 967
BcgI	CGANNNNNNTGC	2 cut(s)	597, 631
BciT130I	CCWGG	4 cut(s)	301, 521, 894, 905
BciVI	GTATCC	1 cut(s)	510
BfaI	CTAG	1 cut(s)	624
BfoI	RGCGCY	1 cut(s)	918
BfrI	CTTAAG	1 cut(s)	1061
BfuAI	ACCTGC	1 cut(s)	987
BfuI	GTATCC	1 cut(s)	510
BisI	GCNGC	1 cut(s)	1121
BlsI	GCNGC	1 cut(s)	1122
BmcAI	AGTACT	1 cut(s)	675
Bme1390I	CCNGG	4 cut(s)	301, 521, 894, 905
Bme18I	GGWCC	2 cut(s)	529, 1114
BmgT120I	GGNCC	3 cut(s)	529, 741, 1114
BmiI	GGNNCC	3 cut(s)	365, 512, 901
BmrFI	CCNGG	4 cut(s)	301, 521, 894, 905
BmsI	GCATC	2 cut(s)	414, 1147
BpiI	GAAGAC	1 cut(s)	33
BpmI	CTGGAG	2 cut(s)	662, 720
BpuEI	CTTGAG	1 cut(s)	654
BsaAI	YACGTR	1 cut(s)	546
BsaBI	GATNNNNATC	1 cut(s)	381
BsaHI	GRCGYC	1 cut(s)	296
BsaJI	CCNNGG	5 cut(s)	299, 519, 520, 730, 903
BsaWI	WCCGGW	1 cut(s)	379
Bsc4I	CCNNNNNNNGG	5 cut(s)	205, 520, 526, 701, 750
Bse118I	RCCGGY	1 cut(s)	743
Bse1I	ACTGG	4 cut(s)	316, 512, 780, 1129
Bse8I	GATNNNNATC	1 cut(s)	381
BseAI	TCCGGA	1 cut(s)	379
BseBI	CCWGG	4 cut(s)	301, 521, 894, 905
BseDI	CCNNGG	5 cut(s)	299, 519, 520, 730, 903
BseGI	GGATG	3 cut(s)	402, 950, 1042
BseJI	GATNNNNATC	1 cut(s)	381
BseLI	CCNNNNNNNGG	5 cut(s)	205, 520, 526, 701, 750
BseMII	CTCAG	1 cut(s)	1020
BseNI	ACTGG	4 cut(s)	316, 512, 780, 1129
BseRI	GAGGAG	2 cut(s)	130, 133
BseX3I	CGGCCG	1 cut(s)	165
BseXI	GCAGC	1 cut(s)	1132
Bsh1285I	CGRYCG	1 cut(s)	168
BshFI	GGCC	2 cut(s)	167, 743
BsiEI	CGRYCG	1 cut(s)	168
BsiHKAI	GWGCWC	1 cut(s)	620
BsiSI	CCGG	3 cut(s)	206, 380, 744
BsiWI	CGTACG	1 cut(s)	368
BslFI	GGGAC	1 cut(s)	485
BslI	CCNNNNNNNGG	5 cut(s)	205, 520, 526, 701, 750
BsmFI	GGGAC	1 cut(s)	485
BsmI	GAATGC	1 cut(s)	1160
BsnI	GGCC	2 cut(s)	167, 743
Bsp1286I	GDGCHC	1 cut(s)	620
Bsp13I	TCCGGA	1 cut(s)	379
Bsp143I	GATC	5 cut(s)	68, 274, 376, 382, 1180
BspACI	CCGC	4 cut(s)	26, 527, 897, 1142
BspANI	GGCC	2 cut(s)	167, 743
BspCNI	CTCAG	1 cut(s)	1021
BspEI	TCCGGA	1 cut(s)	379
BspHI	TCATGA	1 cut(s)	550
BspLI	GGNNCC	3 cut(s)	365, 512, 901
BspMI	ACCTGC	1 cut(s)	987
BspPI	GGATC	4 cut(s)	76, 269, 371, 390
BspQI	GCTCTTC	1 cut(s)	696
BspTI	CTTAAG	1 cut(s)	1061
BsrFI	RCCGGY	1 cut(s)	743
BsrI	ACTGG	4 cut(s)	316, 512, 780, 1129
BssAI	RCCGGY	1 cut(s)	743
BssECI	CCNNGG	5 cut(s)	299, 519, 520, 730, 903
BssMI	GATC	5 cut(s)	68, 274, 376, 382, 1180
BssNI	GRCGYC	1 cut(s)	296
BssSI	CACGAG	1 cut(s)	780
Bst2BI	CACGAG	1 cut(s)	780
Bst2UI	CCWGG	4 cut(s)	301, 521, 894, 905
Bst4CI	ACNGT	3 cut(s)	36, 460, 1074
Bst6I	CTCTTC	2 cut(s)	401, 696
BstACI	GRCGYC	1 cut(s)	296
BstAFI	CTTAAG	1 cut(s)	1061
BstBAI	YACGTR	1 cut(s)	546
BstC8I	GCNNGC	2 cut(s)	14, 325
BstDEI	CTNAG	1 cut(s)	1029
BstF5I	GGATG	3 cut(s)	402, 950, 1042
BstH2I	RGCGCY	1 cut(s)	918
BstHHI	GCGC	2 cut(s)	917, 1194
BstKTI	GATC	5 cut(s)	71, 277, 379, 385, 1183
BstMBI	GATC	5 cut(s)	68, 274, 376, 382, 1180
BstMCI	CGRYCG	1 cut(s)	168
BstMWI	GCNNNNNNNGC	3 cut(s)	304, 624, 695
BstNI	CCWGG	4 cut(s)	301, 521, 894, 905
BstSCI	CCNGG	4 cut(s)	299, 519, 892, 903
BstV1I	GCAGC	1 cut(s)	1132
BstV2I	GAAGAC	1 cut(s)	33
BstZI	CGGCCG	1 cut(s)	165
BsuI	GTATCC	1 cut(s)	510
BsuRI	GGCC	2 cut(s)	167, 743
BtsCI	GGATG	3 cut(s)	402, 950, 1042
BtsIMutI	CAGTG	2 cut(s)	309, 1136
BveI	ACCTGC	1 cut(s)	987
Cac8I	GCNNGC	2 cut(s)	14, 325
CciI	TCATGA	1 cut(s)	550
CfoI	GCGC	2 cut(s)	917, 1194
Cfr10I	RCCGGY	1 cut(s)	743
Cfr13I	GGNCC	3 cut(s)	529, 741, 1114
CseI	GACGC	1 cut(s)	304
Csp6I	GTAC	4 cut(s)	319, 369, 674, 1177
CviAII	CATG	4 cut(s)	551, 1168, 1174, 1199
CviQI	GTAC	4 cut(s)	319, 369, 674, 1177
DdeI	CTNAG	1 cut(s)	1029
DpnI	GATC	5 cut(s)	70, 276, 378, 384, 1182
DpnII	GATC	5 cut(s)	68, 274, 376, 382, 1180
EaeI	YGGCCR	1 cut(s)	165
EagI	CGGCCG	1 cut(s)	165
Eam1104I	CTCTTC	2 cut(s)	401, 696
EarI	CTCTTC	2 cut(s)	401, 696
EclXI	CGGCCG	1 cut(s)	165
Eco32I	GATATC	1 cut(s)	193
Eco47I	GGWCC	2 cut(s)	529, 1114
Eco47III	AGCGCT	1 cut(s)	916
Eco52I	CGGCCG	1 cut(s)	165
Eco57I	CTGAAG	1 cut(s)	858
Eco72I	CACGTG	1 cut(s)	546
EcoRI	GAATTC	2 cut(s)	598, 1135
EcoRII	CCWGG	4 cut(s)	299, 519, 892, 903
EcoRV	GATATC	1 cut(s)	193
EcoT22I	ATGCAT	1 cut(s)	1162
FaeI	CATG	4 cut(s)	554, 1171, 1177, 1202
FaqI	GGGAC	1 cut(s)	485
FatI	CATG	4 cut(s)	550, 1167, 1173, 1198
FauNDI	CATATG	1 cut(s)	887
FblI	GTMKAC	1 cut(s)	255
Fnu4HI	GCNGC	1 cut(s)	1121
FokI	GGATG	3 cut(s)	389, 957, 1049
Fsp4HI	GCNGC	1 cut(s)	1121
FspBI	CTAG	1 cut(s)	624
GlaI	GCGC	2 cut(s)	916, 1193
GluI	GCNGC	1 cut(s)	1121
GsuI	CTGGAG	2 cut(s)	662, 720
HaeII	RGCGCY	1 cut(s)	918
HaeIII	GGCC	2 cut(s)	167, 743
HapII	CCGG	3 cut(s)	206, 380, 744
HgaI	GACGC	1 cut(s)	304
HhaI	GCGC	2 cut(s)	917, 1194
Hin1I	GRCGYC	1 cut(s)	296
Hin1II	CATG	4 cut(s)	554, 1171, 1177, 1202
Hin6I	GCGC	2 cut(s)	915, 1192
HinP1I	GCGC	2 cut(s)	915, 1192
HincII	GTYRAC	1 cut(s)	910
HindII	GTYRAC	1 cut(s)	910
HinfI	GANTC	4 cut(s)	79, 358, 604, 929
HpaI	GTTAAC	1 cut(s)	910
HpaII	CCGG	3 cut(s)	206, 380, 744
HphI	GGTGA	3 cut(s)	383, 574, 1131
Hpy166II	GTNNAC	2 cut(s)	256, 910
Hpy188I	TCNGA	4 cut(s)	48, 190, 353, 1081
Hpy188III	TCNNGA	5 cut(s)	343, 380, 470, 551, 998
Hpy8I	GTNNAC	2 cut(s)	256, 910
Hpy99I	CGWCG	1 cut(s)	272
HpyAV	CCTTC	5 cut(s)	115, 569, 674, 833, 1027
HpyCH4III	ACNGT	3 cut(s)	36, 460, 1074
HpyCH4IV	ACGT	3 cut(s)	284, 545, 633
HpyCH4V	TGCA	2 cut(s)	885, 1160
HpyF10VI	GCNNNNNNNGC	3 cut(s)	304, 624, 695
HpyF3I	CTNAG	1 cut(s)	1029
HpySE526I	ACGT	3 cut(s)	284, 545, 633
Hsp92I	GRCGYC	1 cut(s)	296
Hsp92II	CATG	4 cut(s)	554, 1171, 1177, 1202
HspAI	GCGC	2 cut(s)	915, 1192
Kpn2I	TCCGGA	1 cut(s)	379
KspAI	GTTAAC	1 cut(s)	910
Kzo9I	GATC	5 cut(s)	68, 274, 376, 382, 1180
LguI	GCTCTTC	1 cut(s)	696
LmnI	GCTCC	1 cut(s)	623
Lsp1109I	GCAGC	1 cut(s)	1132
LweI	GCATC	2 cut(s)	414, 1147
MaeI	CTAG	1 cut(s)	624
MaeII	ACGT	3 cut(s)	284, 545, 633
MaeIII	GTNAC	1 cut(s)	541
MalI	GATC	5 cut(s)	70, 276, 378, 384, 1182
MboI	GATC	5 cut(s)	68, 274, 376, 382, 1180
MboII	GAAGA	6 cut(s)	33, 82, 331, 388, 391, 683
MhlI	GDGCHC	1 cut(s)	620
MlyI	GAGTC	3 cut(s)	73, 367, 923
Mph1103I	ATGCAT	1 cut(s)	1162
MroI	TCCGGA	1 cut(s)	379
MroXI	GAANNNNTTC	1 cut(s)	579
MseI	TTAA	4 cut(s)	909, 1050, 1062, 1110
MslI	CAYNNNNRTG	3 cut(s)	654, 784, 1172
MspA1I	CMGCKG	1 cut(s)	698
MspCI	CTTAAG	1 cut(s)	1061
MspI	CCGG	3 cut(s)	206, 380, 744
MspR9I	CCNGG	4 cut(s)	301, 521, 894, 905
Mva1269I	GAATGC	1 cut(s)	1160
MvaI	CCWGG	4 cut(s)	301, 521, 894, 905
MwoI	GCNNNNNNNGC	3 cut(s)	304, 624, 695
NdeI	CATATG	1 cut(s)	887
NdeII	GATC	5 cut(s)	68, 274, 376, 382, 1180
NlaIII	CATG	4 cut(s)	554, 1171, 1177, 1202
NlaIV	GGNNCC	3 cut(s)	365, 512, 901
NmeAIII	GCCGAG	2 cut(s)	143, 256
NmuCI	GTSAC	1 cut(s)	541
NsiI	ATGCAT	1 cut(s)	1162
PagI	TCATGA	1 cut(s)	550
PasI	CCCWGGG	1 cut(s)	520
PciSI	GCTCTTC	1 cut(s)	696
PcsI	WCGNNNNNNNCGW	2 cut(s)	44, 456
PctI	GAATGC	1 cut(s)	1160
PdmI	GAANNNNTTC	1 cut(s)	579
PfeI	GAWTC	1 cut(s)	604
Pfl23II	CGTACG	1 cut(s)	368
PkrI	GCNGC	1 cut(s)	1122
PleI	GAGTC	3 cut(s)	73, 366, 923
PmaCI	CACGTG	1 cut(s)	546
PmlI	CACGTG	1 cut(s)	546
PpsI	GAGTC	3 cut(s)	73, 366, 923
Ppu21I	YACGTR	1 cut(s)	546
Psp6I	CCWGG	4 cut(s)	299, 519, 892, 903
PspCI	CACGTG	1 cut(s)	546
PspGI	CCWGG	4 cut(s)	299, 519, 892, 903
PspLI	CGTACG	1 cut(s)	368
PspN4I	GGNNCC	3 cut(s)	365, 512, 901
PspPI	GGNCC	3 cut(s)	529, 741, 1114
PvuII	CAGCTG	1 cut(s)	698
RsaI	GTAC	4 cut(s)	320, 370, 675, 1178
RsaNI	GTAC	4 cut(s)	319, 369, 674, 1177
RseI	CAYNNNNRTG	3 cut(s)	654, 784, 1172
SapI	GCTCTTC	1 cut(s)	696
SaqAI	TTAA	4 cut(s)	909, 1050, 1062, 1110
SatI	GCNGC	1 cut(s)	1121
Sau3AI	GATC	5 cut(s)	68, 274, 376, 382, 1180
Sau96I	GGNCC	3 cut(s)	529, 741, 1114
ScaI	AGTACT	1 cut(s)	675
SchI	GAGTC	3 cut(s)	73, 367, 923
ScrFI	CCNGG	4 cut(s)	301, 521, 894, 905
SduI	GDGCHC	1 cut(s)	620
SfaNI	GCATC	2 cut(s)	414, 1147
SinI	GGWCC	2 cut(s)	529, 1114
SmiMI	CAYNNNNRTG	3 cut(s)	654, 784, 1172
SmlI	CTYRAG	2 cut(s)	669, 1061
SmoI	CTYRAG	2 cut(s)	669, 1061
SsiI	CCGC	4 cut(s)	26, 527, 897, 1142
SspI	AATATT	1 cut(s)	960
SspMI	CTAG	1 cut(s)	624
StyD4I	CCNGG	4 cut(s)	299, 519, 892, 903
TaaI	ACNGT	3 cut(s)	36, 460, 1074
TaiI	ACGT	3 cut(s)	287, 548, 636
TaqI	TCGA	3 cut(s)	602, 607, 999
TatI	WGTACW	1 cut(s)	673
TfiI	GAWTC	1 cut(s)	604
Tru1I	TTAA	4 cut(s)	909, 1050, 1062, 1110
Tru9I	TTAA	4 cut(s)	909, 1050, 1062, 1110
TscAI	CASTG	2 cut(s)	316, 1136
TseFI	GTSAC	1 cut(s)	541
TseI	GCWGC	1 cut(s)	1120
Tsp45I	GTSAC	1 cut(s)	541
TspDTI	ATGAA	3 cut(s)	97, 391, 631
TspGWI	ACGGA	3 cut(s)	118, 356, 386
TspRI	CASTG	2 cut(s)	316, 1136
Vha464I	CTTAAG	1 cut(s)	1061
VpaK11BI	GGWCC	2 cut(s)	529, 1114
XapI	RAATTY	7 cut(s)	223, 245, 598, 844, 863, 1010, 1135
XmiI	GTMKAC	1 cut(s)	255
XmnI	GAANNNNTTC	1 cut(s)	579
XspI	CTAG	1 cut(s)	624
ZrmI	AGTACT	1 cut(s)	675
Zsp2I	ATGCAT	1 cut(s)	1162

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.