Rh2AG221200

Exostosin family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2A
OG0007378
Physical Location & Seq
Forward (+)
23180039 .. 23184364
4326 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2AG221200.1

Sequence Viewer

Length: 1074 bp
ATGAGTATAGGCAAGCCGTCGTCGGCACCGCCGTCATCGCCGATGTTCTCCTTGCGAGGATCTCTCATCACTCTCGCCGTCTTCACCTTACTTTCCCTCGCCTACTTCTCCCTCAACTTCTCCGTCTCCTCCTCTCCCCCTCCCTCCGTCACCGCCACCGTCGACCGCCCCGTCGTCAGGCAGGAGAAGACTTCCGACTCCAATCCGTCACCCGAGGAGGAGGAGTTTTCGGACGTTTACCACTCGCCGGAGGTGTTCCGGTTGAACTACGCCGAAATGGAGCGGAAATTCAAGGTGTATATTTACCCCGACGGCGATCCAAACACGTTTTACCAGACGCCGAGGAAGCTCACCGGAAAGTATTCTAGTGAGGGATATTTCTTTCAGAATATTAGAGAGGGAAGGTTTCGGACTGAGGATCCGGATCAGGCTCAGCTCTTCTTCATCCCTATCTCCTGCCACAAGATGCGAGGCAAGGGTACTTCATATGAGAATATGACCATAATTGTTCAGAACTATGTGGAGAGCTTGATAGCCAAGTATCCGTACTGGAACAGGACTTTGGGTGCAGATCACTTCTTTGTGACTTGTCACGATGTTGGTGTGAGGGCAACTGAAGGACTTCCGCTTCTTGTAAAGAATTCTATTCGAGTTGTCTGCTCCCCTAGCTATGATGTTGGCTTCATTCCACATAAAGACGTCGCTCTCCCTCAAGTACTGCAACCATTTGCTCTTCCAGCTGGAGGAAATGATGTGGAGAACAGGACAACACTTGGTTTTTGGGCTGGTCATCGGAATTCAAAGATTAGAGTTATACTGGCACGAGTATGGGAGAATGATACAGAACTTTACATCTTGAACAACAGAATAAATAGAGCTGAAGGGAACTTGTTATATCAAAAGAAGTTTTATACTACCAAGTTCTGCATATGCCCAGGTGGTTCTCAGGTCAACAGTGCTCGCCCAATGGACTCAATCCATTATGGCTGTATTCCTGGTAAGAATTCAAATCTTGATGCAAACTTAATCAGAGTAATGCAATGGTCTAACTTTCCATCCTTGCTTGATTGGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Exostosin

Protein Analysis

357

Amino Acids

40.43

Weight (kDa)

8.41

Isoelectric Point (pI)

45.31

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Exostosin_GT47 PF03016 94 - 332 9.4e-39 Exostosin GT47 domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 170
AatII GACGTC 1 cut(s) 702
AccB1I GGYRCC 1 cut(s) 25
AccBSI CCGCTC 1 cut(s) 283
AccI GTMKAC 1 cut(s) 162
AccIII TCCGGA 1 cut(s) 421
AciI CCGC 5 cut(s) 29, 153, 166, 283, 626
AclWI GGATC 5 cut(s) 67, 311, 413, 426, 432
AcsI RAATTY 4 cut(s) 287, 640, 796, 1003
AcuI CTGAAG 2 cut(s) 636, 900
AcyI GRCGYC 2 cut(s) 338, 699
AfaI GTAC 3 cut(s) 481, 548, 717
AfiI CCNNNNNNNGG 3 cut(s) 177, 247, 743
AflIII ACRYGT 1 cut(s) 324
AgsI TTSAA 5 cut(s) 265, 292, 801, 859, 1008
AjnI CCWGG 2 cut(s) 934, 994
AjuI GAANNNNNNNTTGG 2 cut(s) 545, 577
AluBI AGCT 6 cut(s) 349, 436, 528, 669, 740, 878
AluI AGCT 6 cut(s) 349, 436, 528, 669, 740, 878
Alw21I GWGCWC 1 cut(s) 961
Alw26I GTCTC 1 cut(s) 130
AlwI GGATC 5 cut(s) 67, 311, 413, 426, 432
Ama87I CYCGRG 1 cut(s) 212
Aor13HI TCCGGA 1 cut(s) 421
ApoI RAATTY 4 cut(s) 287, 640, 796, 1003
Asp700I GAANNNNTTC 2 cut(s) 361, 621
AsuHPI GGTGA 4 cut(s) 76, 142, 201, 343
AvaI CYCGRG 1 cut(s) 212
BamHI GGATCC 1 cut(s) 418
BanI GGYRCC 1 cut(s) 25
BauI CACGAG 1 cut(s) 822
BbsI GAAGAC 2 cut(s) 73, 194
Bbv12I GWGCWC 1 cut(s) 961
BccI CCATC 1 cut(s) 1063
BceAI ACGGC 3 cut(s) 16, 62, 328
BcgI CGANNNNNNTGC 2 cut(s) 639, 673
BciT130I CCWGG 2 cut(s) 936, 996
BciVI GTATCC 1 cut(s) 552
BcoDI GTCTC 1 cut(s) 130
BfaI CTAG 2 cut(s) 366, 666
BfuI GTATCC 1 cut(s) 552
BlpI GCTNAGC 1 cut(s) 432
BmcAI AGTACT 1 cut(s) 717
Bme1390I CCNGG 2 cut(s) 936, 996
BmeT110I CYCGRG 1 cut(s) 212
BmiI GGNNCC 2 cut(s) 27, 420
BmrFI CCNGG 2 cut(s) 936, 996
BmsI GCATC 2 cut(s) 456, 1006
BpiI GAAGAC 2 cut(s) 73, 194
BplI GAGNNNNNCTC 2 cut(s) 48, 80
BpmI CTGGAG 1 cut(s) 762
Bpu1102I GCTNAGC 1 cut(s) 432
BpuEI CTTGAG 1 cut(s) 696
BsaBI GATNNNNATC 1 cut(s) 423
BsaHI GRCGYC 2 cut(s) 338, 699
BsaJI CCNNGG 3 cut(s) 213, 341, 934
BsaWI WCCGGW 3 cut(s) 258, 353, 421
BsaXI ACNNNNNCTCC 2 cut(s) 209, 239
Bsc4I CCNNNNNNNGG 3 cut(s) 177, 247, 743
Bse1I ACTGG 2 cut(s) 554, 822
Bse3DI GCAATG 1 cut(s) 1046
Bse8I GATNNNNATC 1 cut(s) 423
BseAI TCCGGA 1 cut(s) 421
BseBI CCWGG 2 cut(s) 936, 996
BseDI CCNNGG 3 cut(s) 213, 341, 934
BseGI GGATG 2 cut(s) 444, 1055
BseJI GATNNNNATC 1 cut(s) 423
BseLI CCNNNNNNNGG 3 cut(s) 177, 247, 743
BseMI GCAATG 1 cut(s) 1046
BseMII CTCAG 3 cut(s) 405, 446, 959
BseNI ACTGG 2 cut(s) 554, 822
BseRI GAGGAG 5 cut(s) 118, 121, 230, 233, 236
BsgI GTGCAG 1 cut(s) 588
Bsh1285I CGRYCG 1 cut(s) 166
BshNI GGYRCC 1 cut(s) 25
BsiEI CGRYCG 1 cut(s) 166
BsiHKAI GWGCWC 1 cut(s) 961
BsiHKCI CYCGRG 1 cut(s) 212
BsiSI CCGG 4 cut(s) 248, 259, 354, 422
BslI CCNNNNNNNGG 3 cut(s) 177, 247, 743
BsmAI GTCTC 1 cut(s) 130
BsmBI CGTCTC 1 cut(s) 130
BsoBI CYCGRG 1 cut(s) 212
Bsp1286I GDGCHC 1 cut(s) 961
Bsp13I TCCGGA 1 cut(s) 421
Bsp143I GATC 5 cut(s) 59, 316, 418, 424, 571
Bsp1720I GCTNAGC 1 cut(s) 432
BspACI CCGC 5 cut(s) 29, 153, 166, 283, 626
BspCNI CTCAG 3 cut(s) 406, 445, 958
BspEI TCCGGA 1 cut(s) 421
BspLI GGNNCC 2 cut(s) 27, 420
BspPI GGATC 5 cut(s) 67, 311, 413, 426, 432
BspQI GCTCTTC 2 cut(s) 443, 738
BspT107I GGYRCC 1 cut(s) 25
BsrBI CCGCTC 1 cut(s) 283
BsrDI GCAATG 1 cut(s) 1046
BsrI ACTGG 2 cut(s) 554, 822
BssECI CCNNGG 3 cut(s) 213, 341, 934
BssMI GATC 5 cut(s) 59, 316, 418, 424, 571
BssNI GRCGYC 2 cut(s) 338, 699
BssSI CACGAG 1 cut(s) 822
Bst2BI CACGAG 1 cut(s) 822
Bst2UI CCWGG 2 cut(s) 936, 996
Bst4CI ACNGT 2 cut(s) 160, 956
Bst6I CTCTTC 2 cut(s) 443, 738
BstACI GRCGYC 2 cut(s) 338, 699
BstC8I GCNNGC 2 cut(s) 14, 961
BstDEI CTNAG 3 cut(s) 414, 432, 945
BstF5I GGATG 2 cut(s) 444, 1055
BstKTI GATC 5 cut(s) 62, 319, 421, 427, 574
BstMAI GTCTC 1 cut(s) 130
BstMBI GATC 5 cut(s) 59, 316, 418, 424, 571
BstMCI CGRYCG 1 cut(s) 166
BstMWI GCNNNNNNNGC 4 cut(s) 37, 346, 666, 737
BstNI CCWGG 2 cut(s) 936, 996
BstSCI CCNGG 2 cut(s) 934, 994
BstV2I GAAGAC 2 cut(s) 73, 194
BstX2I RGATCY 2 cut(s) 59, 418
BstYI RGATCY 2 cut(s) 59, 418
BsuI GTATCC 1 cut(s) 552
BtgZI GCGATG 1 cut(s) 21
BtsCI GGATG 2 cut(s) 444, 1055
BtsIMutI CAGTG 1 cut(s) 961
Cac8I GCNNGC 2 cut(s) 14, 961
CseI GACGC 1 cut(s) 346
Csp6I GTAC 3 cut(s) 480, 547, 716
CviQI GTAC 3 cut(s) 480, 547, 716
DdeI CTNAG 3 cut(s) 414, 432, 945
DpnI GATC 5 cut(s) 61, 318, 420, 426, 573
DpnII GATC 5 cut(s) 59, 316, 418, 424, 571
DrdI GACNNNNNNGTC 1 cut(s) 170
DseDI GACNNNNNNGTC 1 cut(s) 170
Eam1104I CTCTTC 2 cut(s) 443, 738
EarI CTCTTC 2 cut(s) 443, 738
Eco57I CTGAAG 2 cut(s) 636, 900
Eco88I CYCGRG 1 cut(s) 212
EcoRI GAATTC 3 cut(s) 640, 796, 1003
EcoRII CCWGG 2 cut(s) 934, 994
Esp3I CGTCTC 1 cut(s) 130
FauNDI CATATG 2 cut(s) 487, 929
FblI GTMKAC 1 cut(s) 162
FokI GGATG 2 cut(s) 431, 1042
FspBI CTAG 2 cut(s) 366, 666
GsuI CTGGAG 1 cut(s) 762
HapII CCGG 4 cut(s) 248, 259, 354, 422
HgaI GACGC 1 cut(s) 346
Hin1I GRCGYC 2 cut(s) 338, 699
HincII GTYRAC 2 cut(s) 163, 952
HindII GTYRAC 2 cut(s) 163, 952
HinfI GANTC 2 cut(s) 197, 971
HpaII CCGG 4 cut(s) 248, 259, 354, 422
HphI GGTGA 4 cut(s) 76, 142, 201, 343
Hpy166II GTNNAC 3 cut(s) 163, 238, 952
Hpy188I TCNGA 7 cut(s) 196, 232, 387, 411, 513, 795, 1031
Hpy188III TCNNGA 4 cut(s) 422, 593, 856, 1013
Hpy8I GTNNAC 3 cut(s) 163, 238, 952
Hpy99I CGWCG 6 cut(s) 22, 25, 164, 176, 314, 704
HpyAV CCTTC 3 cut(s) 396, 611, 875
HpyCH4III ACNGT 2 cut(s) 160, 956
HpyCH4IV ACGT 3 cut(s) 234, 326, 699
HpyCH4V TGCA 5 cut(s) 569, 721, 927, 1019, 1039
HpyF10VI GCNNNNNNNGC 4 cut(s) 37, 346, 666, 737
HpyF3I CTNAG 3 cut(s) 414, 432, 945
HpySE526I ACGT 3 cut(s) 234, 326, 699
Hsp92I GRCGYC 2 cut(s) 338, 699
Kpn2I TCCGGA 1 cut(s) 421
Kzo9I GATC 5 cut(s) 59, 316, 418, 424, 571
LguI GCTCTTC 2 cut(s) 443, 738
LmnI GCTCC 2 cut(s) 280, 665
LweI GCATC 2 cut(s) 456, 1006
MaeI CTAG 2 cut(s) 366, 666
MaeII ACGT 3 cut(s) 234, 326, 699
MaeIII GTNAC 4 cut(s) 148, 207, 583, 590
MalI GATC 5 cut(s) 61, 318, 420, 426, 573
MbiI CCGCTC 1 cut(s) 283
MboI GATC 5 cut(s) 59, 316, 418, 424, 571
MboII GAAGA 5 cut(s) 73, 199, 430, 433, 725
MflI RGATCY 2 cut(s) 59, 418
MhlI GDGCHC 1 cut(s) 961
MluCI AATT 5 cut(s) 287, 504, 640, 796, 1003
MlyI GAGTC 2 cut(s) 191, 965
MmeI TCCRAC 1 cut(s) 219
MroI TCCGGA 1 cut(s) 421
MroXI GAANNNNTTC 2 cut(s) 361, 621
MseI TTAA 1 cut(s) 1025
MslI CAYNNNNRTG 1 cut(s) 826
MspA1I CMGCKG 1 cut(s) 740
MspI CCGG 4 cut(s) 248, 259, 354, 422
MspR9I CCNGG 2 cut(s) 936, 996
MvaI CCWGG 2 cut(s) 936, 996
MwoI GCNNNNNNNGC 4 cut(s) 37, 346, 666, 737
NdeI CATATG 2 cut(s) 487, 929
NdeII GATC 5 cut(s) 59, 316, 418, 424, 571
NlaIV GGNNCC 2 cut(s) 27, 420
NmeAIII GCCGAG 1 cut(s) 366
NmuCI GTSAC 4 cut(s) 148, 207, 583, 590
PciSI GCTCTTC 2 cut(s) 443, 738
PcsI WCGNNNNNNNCGW 2 cut(s) 29, 168
PdmI GAANNNNTTC 2 cut(s) 361, 621
PleI GAGTC 2 cut(s) 191, 965
PpsI GAGTC 2 cut(s) 191, 965
Psp6I CCWGG 2 cut(s) 934, 994
PspGI CCWGG 2 cut(s) 934, 994
PspN4I GGNNCC 2 cut(s) 27, 420
PsuI RGATCY 2 cut(s) 59, 418
PvuII CAGCTG 1 cut(s) 740
RsaI GTAC 3 cut(s) 481, 548, 717
RsaNI GTAC 3 cut(s) 480, 547, 716
RseI CAYNNNNRTG 1 cut(s) 826
SalI GTCGAC 1 cut(s) 161
SapI GCTCTTC 2 cut(s) 443, 738
SaqAI TTAA 1 cut(s) 1025
Sau3AI GATC 5 cut(s) 59, 316, 418, 424, 571
ScaI AGTACT 1 cut(s) 717
SchI GAGTC 2 cut(s) 191, 965
ScrFI CCNGG 2 cut(s) 936, 996
SduI GDGCHC 1 cut(s) 961
SfaNI GCATC 2 cut(s) 456, 1006
SmiMI CAYNNNNRTG 1 cut(s) 826
SmlI CTYRAG 1 cut(s) 711
SmoI CTYRAG 1 cut(s) 711
Sse9I AATT 5 cut(s) 287, 504, 640, 796, 1003
SsiI CCGC 5 cut(s) 29, 153, 166, 283, 626
SspI AATATT 1 cut(s) 391
SspMI CTAG 2 cut(s) 366, 666
StyD4I CCNGG 2 cut(s) 934, 994
TaaI ACNGT 2 cut(s) 160, 956
TaiI ACGT 3 cut(s) 237, 329, 702
TaqI TCGA 2 cut(s) 162, 649
TasI AATT 5 cut(s) 287, 504, 640, 796, 1003
TatI WGTACW 1 cut(s) 715
Tru1I TTAA 1 cut(s) 1025
Tru9I TTAA 1 cut(s) 1025
TscAI CASTG 1 cut(s) 961
TseFI GTSAC 4 cut(s) 148, 207, 583, 590
Tsp45I GTSAC 4 cut(s) 148, 207, 583, 590
TspDTI ATGAA 3 cut(s) 433, 474, 673
TspGWI ACGGA 4 cut(s) 112, 136, 195, 534
TspRI CASTG 1 cut(s) 961
XapI RAATTY 4 cut(s) 287, 640, 796, 1003
XmiI GTMKAC 1 cut(s) 162
XmnI GAANNNNTTC 2 cut(s) 361, 621
XspI CTAG 2 cut(s) 366, 666
ZraI GACGTC 1 cut(s) 700
ZrmI AGTACT 1 cut(s) 717
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.