Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0023099.1

Orthogroup ID

OG0007378

Physical Location & Seq

Genomic Coordinates Reverse (-)

1624 .. 2108

Gene Structure 485 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0023099.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 393 bp

atgagtgtaggcaagccgtcgtcgtcaccggcgccatcggcgatgttctccttacgaggatctctcatcactctcgccgtcttcaccgcaggaggagacttccaactccaatctgtcacccgaggaagaggaagagtttttggacatttaccactcaccggaggtgttcggttgaactacgccgaaatggagcggaaattcaaggtgtatatttatccaaacggcgatcagaacacgttttgccagatgccgaggaagctcacctggaaatattctagtgagggatatttctttcagaatattagaaagggaaggtttcagaccgaggatccgggtcaggctcagctcttcttcatccctatctcctgccacaagatgcgaggcaaggtatag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Exostosin

Protein Analysis

130

Amino Acids

14.65

Weight (kDa)

10.2

Isoelectric Point (pI)

45.11

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007378)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G38040 AT4G38040
fragaria_vesca	FvH4_1g19330 FvH4_1g19330 FvH4_1g19330
malus_domestica	MD01G1041200.v1.1 MD15G1310000.v1.1
prunus_persica	Prupe.6G204800_v2.0.a1 Prupe.6G204800_v2.0.a1
pyrus_communis	pycom01g06890 pycom15g27410
rosa_chinensis	RchiOBHm_Chr2g0110701 RchiOBHm_Chr4g0406901
rosa_laevigata	RLG00000017833 RLG00000021049
rosa_multiflora	Rmu_co8143526.1_g000001 Rmu_sc0023099.1_g000001
rosa_roxburghii	Rroxscaffold_2G00133010
rosa_rugosa	Rorug02G0169000
rosa_samantha	Rh2AG221200 Rh2BG231300 Rh2CG223600 Rh2DG227400 Rh6AG202800
rosa_wichuraiana	Rw2G017070

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	31
AccBSI	CCGCTC	1 cut(s)	193
AciI	CCGC	2 cut(s)	87, 193
AclWI	GGATC	3 cut(s)	67, 323, 336
AcsI	RAATTY	1 cut(s)	197
AcyI	GRCGYC	1 cut(s)	32
AfiI	CCNNNNNNNGG	1 cut(s)	158
AflIII	ACRYGT	1 cut(s)	234
AgsI	TTSAA	2 cut(s)	175, 202
AjnI	CCWGG	1 cut(s)	263
AluBI	AGCT	2 cut(s)	259, 346
AluI	AGCT	2 cut(s)	259, 346
Alw26I	GTCTC	1 cut(s)	90
AlwI	GGATC	3 cut(s)	67, 323, 336
Ama87I	CYCGRG	1 cut(s)	120
ApoI	RAATTY	1 cut(s)	197
AspLEI	GCGC	1 cut(s)	34
AsuC2I	CCSGG	1 cut(s)	333
AsuHPI	GGTGA	5 cut(s)	18, 76, 109, 148, 253
AvaI	CYCGRG	1 cut(s)	120
BamHI	GGATCC	1 cut(s)	328
BanI	GGYRCC	1 cut(s)	31
BbsI	GAAGAC	1 cut(s)	73
BccI	CCATC	1 cut(s)	43
BceAI	ACGGC	2 cut(s)	62, 238
BciT130I	CCWGG	1 cut(s)	265
BcnI	CCSGG	1 cut(s)	333
BcoDI	GTCTC	1 cut(s)	90
BfaI	CTAG	1 cut(s)	276
BfoI	RGCGCY	1 cut(s)	35
BlpI	GCTNAGC	1 cut(s)	342
Bme1390I	CCNGG	2 cut(s)	265, 333
BmeT110I	CYCGRG	1 cut(s)	120
BmiI	GGNNCC	2 cut(s)	33, 330
BmrFI	CCNGG	2 cut(s)	265, 333
BmsI	GCATC	2 cut(s)	237, 366
BpiI	GAAGAC	1 cut(s)	73
BplI	GAGNNNNNCTC	2 cut(s)	48, 80
Bpu1102I	GCTNAGC	1 cut(s)	342
BpuMI	CCSGG	1 cut(s)	333
BsaHI	GRCGYC	1 cut(s)	32
BsaJI	CCNNGG	3 cut(s)	121, 251, 324
BsaWI	WCCGGW	1 cut(s)	158
Bsc4I	CCNNNNNNNGG	1 cut(s)	158
Bse118I	RCCGGY	1 cut(s)	28
BseBI	CCWGG	1 cut(s)	265
BseDI	CCNNGG	3 cut(s)	121, 251, 324
BseGI	GGATG	1 cut(s)	354
BseLI	CCNNNNNNNGG	1 cut(s)	158
BseMII	CTCAG	1 cut(s)	356
BseRI	GAGGAG	1 cut(s)	108
BshNI	GGYRCC	1 cut(s)	31
BsiHKCI	CYCGRG	1 cut(s)	120
BsiSI	CCGG	3 cut(s)	29, 159, 332
BslI	CCNNNNNNNGG	1 cut(s)	158
BsmAI	GTCTC	1 cut(s)	90
BsoBI	CYCGRG	1 cut(s)	120
Bsp143I	GATC	3 cut(s)	59, 226, 328
Bsp1720I	GCTNAGC	1 cut(s)	342
BspACI	CCGC	2 cut(s)	87, 193
BspCNI	CTCAG	1 cut(s)	355
BspLI	GGNNCC	2 cut(s)	33, 330
BspPI	GGATC	3 cut(s)	67, 323, 336
BspQI	GCTCTTC	1 cut(s)	353
BspT107I	GGYRCC	1 cut(s)	31
BsrBI	CCGCTC	1 cut(s)	193
BsrFI	RCCGGY	1 cut(s)	28
BssAI	RCCGGY	1 cut(s)	28
BssECI	CCNNGG	3 cut(s)	121, 251, 324
BssMI	GATC	3 cut(s)	59, 226, 328
BssNI	GRCGYC	1 cut(s)	32
Bst2UI	CCWGG	1 cut(s)	265
Bst6I	CTCTTC	3 cut(s)	121, 127, 353
BstACI	GRCGYC	1 cut(s)	32
BstC8I	GCNNGC	1 cut(s)	14
BstDEI	CTNAG	1 cut(s)	342
BstF5I	GGATG	1 cut(s)	354
BstH2I	RGCGCY	1 cut(s)	35
BstHHI	GCGC	1 cut(s)	34
BstKTI	GATC	3 cut(s)	62, 229, 331
BstMAI	GTCTC	1 cut(s)	90
BstMBI	GATC	3 cut(s)	59, 226, 328
BstMWI	GCNNNNNNNGC	2 cut(s)	38, 256
BstNI	CCWGG	1 cut(s)	265
BstSCI	CCNGG	2 cut(s)	263, 331
BstV2I	GAAGAC	1 cut(s)	73
BstX2I	RGATCY	2 cut(s)	59, 328
BstYI	RGATCY	2 cut(s)	59, 328
BtgZI	GCGATG	1 cut(s)	56
BtsCI	GGATG	1 cut(s)	354
Cac8I	GCNNGC	1 cut(s)	14
CfoI	GCGC	1 cut(s)	34
Cfr10I	RCCGGY	1 cut(s)	28
CviJI	RGCY	4 cut(s)	16, 259, 341, 346
CviKI_1	RGCY	4 cut(s)	16, 259, 341, 346
DdeI	CTNAG	1 cut(s)	342
DinI	GGCGCC	1 cut(s)	33
DpnI	GATC	3 cut(s)	61, 228, 330
DpnII	GATC	3 cut(s)	59, 226, 328
Eam1104I	CTCTTC	3 cut(s)	121, 127, 353
EarI	CTCTTC	3 cut(s)	121, 127, 353
Eco88I	CYCGRG	1 cut(s)	120
EcoRII	CCWGG	1 cut(s)	263
EgeI	GGCGCC	1 cut(s)	33
EheI	GGCGCC	1 cut(s)	33
FaiI	YATR	2 cut(s)	210, 391
FokI	GGATG	1 cut(s)	341
FspBI	CTAG	1 cut(s)	276
GlaI	GCGC	1 cut(s)	33
HaeII	RGCGCY	1 cut(s)	35
HapII	CCGG	3 cut(s)	29, 159, 332
HhaI	GCGC	1 cut(s)	34
Hin1I	GRCGYC	1 cut(s)	32
Hin6I	GCGC	1 cut(s)	32
HinP1I	GCGC	1 cut(s)	32
HpaII	CCGG	3 cut(s)	29, 159, 332
HphI	GGTGA	5 cut(s)	18, 76, 109, 148, 253
Hpy188I	TCNGA	3 cut(s)	231, 297, 321
Hpy99I	CGWCG	2 cut(s)	22, 25
HpyAV	CCTTC	1 cut(s)	306
HpyCH4IV	ACGT	1 cut(s)	236
HpyF10VI	GCNNNNNNNGC	2 cut(s)	38, 256
HpyF3I	CTNAG	1 cut(s)	342
HpySE526I	ACGT	1 cut(s)	236
Hsp92I	GRCGYC	1 cut(s)	32
HspAI	GCGC	1 cut(s)	32
KasI	GGCGCC	1 cut(s)	31
Kzo9I	GATC	3 cut(s)	59, 226, 328
LguI	GCTCTTC	1 cut(s)	353
LmnI	GCTCC	1 cut(s)	190
LpnPI	CCDG	9 cut(s)	42, 75, 172, 250, 257, 277, 323, 345, 379
LweI	GCATC	2 cut(s)	237, 366
MaeI	CTAG	1 cut(s)	276
MaeII	ACGT	1 cut(s)	236
MaeIII	GTNAC	2 cut(s)	24, 115
MalI	GATC	3 cut(s)	61, 228, 330
MbiI	CCGCTC	1 cut(s)	193
MboI	GATC	3 cut(s)	59, 226, 328
MboII	GAAGA	5 cut(s)	73, 138, 144, 340, 343
MflI	RGATCY	2 cut(s)	59, 328
MluCI	AATT	1 cut(s)	197
Mly113I	GGCGCC	1 cut(s)	32
MmeI	TCCRAC	1 cut(s)	127
MnlI	CCTC	9 cut(s)	50, 86, 116, 122, 155, 246, 274, 319, 374
MspI	CCGG	3 cut(s)	29, 159, 332
MspR9I	CCNGG	2 cut(s)	265, 333
MvaI	CCWGG	1 cut(s)	265
MwoI	GCNNNNNNNGC	2 cut(s)	38, 256
NarI	GGCGCC	1 cut(s)	32
NciI	CCSGG	1 cut(s)	333
NdeII	GATC	3 cut(s)	59, 226, 328
NlaIV	GGNNCC	2 cut(s)	33, 330
NmeAIII	GCCGAG	1 cut(s)	276
NmuCI	GTSAC	2 cut(s)	24, 115
PciSI	GCTCTTC	1 cut(s)	353
PluTI	GGCGCC	1 cut(s)	35
Psp6I	CCWGG	1 cut(s)	263
PspGI	CCWGG	1 cut(s)	263
PspN4I	GGNNCC	2 cut(s)	33, 330
PsuI	RGATCY	2 cut(s)	59, 328
SapI	GCTCTTC	1 cut(s)	353
Sau3AI	GATC	3 cut(s)	59, 226, 328
ScrFI	CCNGG	2 cut(s)	265, 333
SetI	ASST	8 cut(s)	166, 207, 239, 261, 266, 317, 348, 390
SfaNI	GCATC	2 cut(s)	237, 366
SfoI	GGCGCC	1 cut(s)	33
SgrAI	CRCCGGYG	1 cut(s)	28
Sse9I	AATT	1 cut(s)	197
SsiI	CCGC	2 cut(s)	87, 193
SspDI	GGCGCC	1 cut(s)	31
SspI	AATATT	2 cut(s)	272, 301
SspMI	CTAG	1 cut(s)	276
StyD4I	CCNGG	2 cut(s)	263, 331
TaiI	ACGT	1 cut(s)	239
TaqII	GACCGA	1 cut(s)	338
TasI	AATT	1 cut(s)	197
TseFI	GTSAC	2 cut(s)	24, 115
Tsp45I	GTSAC	2 cut(s)	24, 115
TspDTI	ATGAA	1 cut(s)	343
XapI	RAATTY	1 cut(s)	197
XspI	CTAG	1 cut(s)	276

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.