Rmu_co8143526.1_g000001

Exostosin family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_co8143526.1
OG0007378
Physical Location & Seq
Forward (+)
74 .. 568
495 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_co8143526.1_g000001.1.cds

Sequence Viewer

Length: 495 bp
atgagtgtaggcaagctgtcgtcggcaccgccgtcatcgccgatgttctccttgcgaggatctctcatcactctcgccgtcttcaccttactttccctcgcctacttctccctcaacttctccgtctcctcccctccccctccctccgtcaccgccaccgtcgaccgccccgtcgtcaggcaggagaagacttccgactccaatccgtcacccgaggaggaggagttttcggacgtttaccactcgccggaggtgttccggttgaactacgccgaaatggagcggaaattcaaggtgtatatttaccccgacggcgatccgaacacgttttaccagacgccgaggaagctcaccggaaagtattccagtgagggatatttctttcagaatattagagagggaaggtttcggaccgaggatccggatcaggctcagctcttcttcatccctatctcctgccacaagatgcgaggcaaggtacggtggtttatctga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Exostosin

Protein Analysis

164

Amino Acids

18.79

Weight (kDa)

7.82

Isoelectric Point (pI)

61.32

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 170
AccB1I GGYRCC 1 cut(s) 25
AccBSI CCGCTC 1 cut(s) 283
AccI GTMKAC 1 cut(s) 162
AccIII TCCGGA 1 cut(s) 421
AciI CCGC 4 cut(s) 29, 153, 166, 283
AclWI GGATC 5 cut(s) 67, 311, 413, 426, 432
AcsI RAATTY 1 cut(s) 287
AcyI GRCGYC 1 cut(s) 338
AfaI GTAC 1 cut(s) 480
AfiI CCNNNNNNNGG 2 cut(s) 177, 247
AflIII ACRYGT 1 cut(s) 324
AgsI TTSAA 2 cut(s) 265, 292
AluBI AGCT 3 cut(s) 16, 349, 436
AluI AGCT 3 cut(s) 16, 349, 436
Alw26I GTCTC 1 cut(s) 130
AlwI GGATC 5 cut(s) 67, 311, 413, 426, 432
Ama87I CYCGRG 1 cut(s) 212
Aor13HI TCCGGA 1 cut(s) 421
ApoI RAATTY 1 cut(s) 287
Asp700I GAANNNNTTC 1 cut(s) 361
AspS9I GGNCC 1 cut(s) 411
AsuHPI GGTGA 4 cut(s) 76, 142, 201, 343
AvaI CYCGRG 1 cut(s) 212
AvaII GGWCC 1 cut(s) 411
BaeI ACNNNNGTAYC 1 cut(s) 470
BamHI GGATCC 1 cut(s) 418
BanI GGYRCC 1 cut(s) 25
BbsI GAAGAC 2 cut(s) 73, 194
BceAI ACGGC 3 cut(s) 16, 62, 328
BcoDI GTCTC 1 cut(s) 130
BlpI GCTNAGC 1 cut(s) 432
Bme18I GGWCC 1 cut(s) 411
BmeT110I CYCGRG 1 cut(s) 212
BmgT120I GGNCC 1 cut(s) 411
BmiI GGNNCC 2 cut(s) 27, 420
BmsI GCATC 1 cut(s) 456
BpiI GAAGAC 2 cut(s) 73, 194
BplI GAGNNNNNCTC 2 cut(s) 48, 80
Bpu1102I GCTNAGC 1 cut(s) 432
BsaBI GATNNNNATC 1 cut(s) 423
BsaHI GRCGYC 1 cut(s) 338
BsaJI CCNNGG 3 cut(s) 213, 341, 414
BsaWI WCCGGW 3 cut(s) 258, 353, 421
BsaXI ACNNNNNCTCC 2 cut(s) 209, 239
Bsc4I CCNNNNNNNGG 2 cut(s) 177, 247
Bse1I ACTGG 1 cut(s) 366
Bse8I GATNNNNATC 1 cut(s) 423
BseAI TCCGGA 1 cut(s) 421
BseDI CCNNGG 3 cut(s) 213, 341, 414
BseGI GGATG 1 cut(s) 444
BseJI GATNNNNATC 1 cut(s) 423
BseLI CCNNNNNNNGG 2 cut(s) 177, 247
BseMII CTCAG 1 cut(s) 446
BseNI ACTGG 1 cut(s) 366
BseRI GAGGAG 4 cut(s) 118, 230, 233, 236
Bsh1285I CGRYCG 1 cut(s) 166
BshNI GGYRCC 1 cut(s) 25
BsiEI CGRYCG 1 cut(s) 166
BsiHKCI CYCGRG 1 cut(s) 212
BsiSI CCGG 4 cut(s) 248, 259, 354, 422
BslI CCNNNNNNNGG 2 cut(s) 177, 247
BsmAI GTCTC 1 cut(s) 130
BsmBI CGTCTC 1 cut(s) 130
BsoBI CYCGRG 1 cut(s) 212
Bsp13I TCCGGA 1 cut(s) 421
Bsp143I GATC 4 cut(s) 59, 316, 418, 424
Bsp1720I GCTNAGC 1 cut(s) 432
BspACI CCGC 4 cut(s) 29, 153, 166, 283
BspCNI CTCAG 1 cut(s) 445
BspEI TCCGGA 1 cut(s) 421
BspLI GGNNCC 2 cut(s) 27, 420
BspPI GGATC 5 cut(s) 67, 311, 413, 426, 432
BspQI GCTCTTC 1 cut(s) 443
BspT107I GGYRCC 1 cut(s) 25
BsrBI CCGCTC 1 cut(s) 283
BsrI ACTGG 1 cut(s) 366
BssECI CCNNGG 3 cut(s) 213, 341, 414
BssMI GATC 4 cut(s) 59, 316, 418, 424
BssNI GRCGYC 1 cut(s) 338
Bst4CI ACNGT 2 cut(s) 160, 483
Bst6I CTCTTC 1 cut(s) 443
BstACI GRCGYC 1 cut(s) 338
BstC8I GCNNGC 1 cut(s) 14
BstDEI CTNAG 1 cut(s) 432
BstF5I GGATG 1 cut(s) 444
BstKTI GATC 4 cut(s) 62, 319, 421, 427
BstMAI GTCTC 1 cut(s) 130
BstMBI GATC 4 cut(s) 59, 316, 418, 424
BstMCI CGRYCG 1 cut(s) 166
BstMWI GCNNNNNNNGC 2 cut(s) 37, 346
BstV2I GAAGAC 2 cut(s) 73, 194
BstX2I RGATCY 2 cut(s) 59, 418
BstYI RGATCY 2 cut(s) 59, 418
BtgZI GCGATG 1 cut(s) 21
BtsCI GGATG 1 cut(s) 444
BtsIMutI CAGTG 1 cut(s) 373
Cac8I GCNNGC 1 cut(s) 14
Cfr13I GGNCC 1 cut(s) 411
CpoI CGGWCCG 1 cut(s) 411
CseI GACGC 1 cut(s) 346
Csp6I GTAC 1 cut(s) 479
CspI CGGWCCG 1 cut(s) 411
CviJI RGCY 4 cut(s) 16, 349, 431, 436
CviKI_1 RGCY 4 cut(s) 16, 349, 431, 436
CviQI GTAC 1 cut(s) 479
DdeI CTNAG 1 cut(s) 432
DpnI GATC 4 cut(s) 61, 318, 420, 426
DpnII GATC 4 cut(s) 59, 316, 418, 424
DrdI GACNNNNNNGTC 1 cut(s) 170
DseDI GACNNNNNNGTC 1 cut(s) 170
Eam1104I CTCTTC 1 cut(s) 443
EarI CTCTTC 1 cut(s) 443
Eco47I GGWCC 1 cut(s) 411
Eco88I CYCGRG 1 cut(s) 212
Esp3I CGTCTC 1 cut(s) 130
FaiI YATR 1 cut(s) 300
FblI GTMKAC 1 cut(s) 162
FokI GGATG 1 cut(s) 431
HapII CCGG 4 cut(s) 248, 259, 354, 422
HgaI GACGC 1 cut(s) 346
Hin1I GRCGYC 1 cut(s) 338
HincII GTYRAC 1 cut(s) 163
HindII GTYRAC 1 cut(s) 163
HinfI GANTC 1 cut(s) 197
HpaII CCGG 4 cut(s) 248, 259, 354, 422
HphI GGTGA 4 cut(s) 76, 142, 201, 343
Hpy166II GTNNAC 2 cut(s) 163, 238
Hpy188I TCNGA 6 cut(s) 196, 232, 321, 387, 411, 494
Hpy188III TCNNGA 1 cut(s) 422
Hpy8I GTNNAC 2 cut(s) 163, 238
Hpy99I CGWCG 4 cut(s) 25, 164, 176, 314
HpyAV CCTTC 1 cut(s) 396
HpyCH4III ACNGT 2 cut(s) 160, 483
HpyCH4IV ACGT 2 cut(s) 234, 326
HpyF10VI GCNNNNNNNGC 2 cut(s) 37, 346
HpyF3I CTNAG 1 cut(s) 432
HpySE526I ACGT 2 cut(s) 234, 326
Hsp92I GRCGYC 1 cut(s) 338
Kpn2I TCCGGA 1 cut(s) 421
Kzo9I GATC 4 cut(s) 59, 316, 418, 424
LguI GCTCTTC 1 cut(s) 443
LmnI GCTCC 1 cut(s) 280
LweI GCATC 1 cut(s) 456
MaeII ACGT 2 cut(s) 234, 326
MaeIII GTNAC 2 cut(s) 148, 207
MalI GATC 4 cut(s) 61, 318, 420, 426
MbiI CCGCTC 1 cut(s) 283
MboI GATC 4 cut(s) 59, 316, 418, 424
MboII GAAGA 4 cut(s) 73, 199, 430, 433
MflI RGATCY 2 cut(s) 59, 418
MluCI AATT 1 cut(s) 287
MlyI GAGTC 1 cut(s) 191
MmeI TCCRAC 1 cut(s) 219
MroI TCCGGA 1 cut(s) 421
MroXI GAANNNNTTC 1 cut(s) 361
MspI CCGG 4 cut(s) 248, 259, 354, 422
MwoI GCNNNNNNNGC 2 cut(s) 37, 346
NdeII GATC 4 cut(s) 59, 316, 418, 424
NlaIV GGNNCC 2 cut(s) 27, 420
NmeAIII GCCGAG 1 cut(s) 366
NmuCI GTSAC 2 cut(s) 148, 207
PciSI GCTCTTC 1 cut(s) 443
PcsI WCGNNNNNNNCGW 2 cut(s) 29, 168
PdmI GAANNNNTTC 1 cut(s) 361
PleI GAGTC 1 cut(s) 191
PpsI GAGTC 1 cut(s) 191
PspN4I GGNNCC 2 cut(s) 27, 420
PspPI GGNCC 1 cut(s) 411
PsrI GAACNNNNNNTAC 2 cut(s) 314, 346
PsuI RGATCY 2 cut(s) 59, 418
RsaI GTAC 1 cut(s) 480
RsaNI GTAC 1 cut(s) 479
Rsr2I CGGWCCG 1 cut(s) 411
RsrII CGGWCCG 1 cut(s) 411
SalI GTCGAC 1 cut(s) 161
SapI GCTCTTC 1 cut(s) 443
Sau3AI GATC 4 cut(s) 59, 316, 418, 424
Sau96I GGNCC 1 cut(s) 411
SchI GAGTC 1 cut(s) 191
SfaNI GCATC 1 cut(s) 456
SinI GGWCC 1 cut(s) 411
Sse9I AATT 1 cut(s) 287
SsiI CCGC 4 cut(s) 29, 153, 166, 283
SspI AATATT 1 cut(s) 391
TaaI ACNGT 2 cut(s) 160, 483
TaiI ACGT 2 cut(s) 237, 329
TaqI TCGA 1 cut(s) 162
TaqII GACCGA 1 cut(s) 428
TasI AATT 1 cut(s) 287
TscAI CASTG 1 cut(s) 373
TseFI GTSAC 2 cut(s) 148, 207
Tsp45I GTSAC 2 cut(s) 148, 207
TspDTI ATGAA 1 cut(s) 433
TspGWI ACGGA 3 cut(s) 112, 136, 195
TspRI CASTG 1 cut(s) 373
VpaK11BI GGWCC 1 cut(s) 411
XapI RAATTY 1 cut(s) 287
XmiI GTMKAC 1 cut(s) 162
XmnI GAANNNNTTC 1 cut(s) 361
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.