AT4G38810

Calcium-binding EF hand family protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
4
OG0009469
Physical Location & Seq
Reverse (-)
18115283 .. 18119160
3878 bp
Loading structure...
UTR
Exon/CDS
Intron
AT4G38810.2

Sequence Viewer

Length: 798 bp
ATGGCTGCTGGTCTGAAACGTGATCCTATCGTCATCCTCAGGATGGACGGTGAGGATCTCTCGGAGTTTGTCCACGGCCCTGGATATGAAATCGAGAGCATTTCTGTTTTCTCAGAGCTCTCCAGTAGCAAGGACGCATCGCTCCGTGATTGTATCGTCAAAGCTCTCCAGTCTCTTTCTGTTGATCATGGAATGCCTCCTTCCAACGACCCATGGGTGATGAGCAACATCGTAGAACCAATTGTTGACTCTTGTCTTGATGAAGAAGATAAAAGAGAGAAAAGCGCGTCTCAGGAGAGATTCTTGGAAGCATTCAAGAGAGTCGTGGAGAGTGTGGCTCAGCGTCTCAATGAACAGCCCGTGATCGTTGCTCACAGCGAAAACACCTTTGATGGGAGCGGTATCAGGAGGCTCTTGTCCAATAAATTCGAATTCGATAAGGCACTAAACGTTGCCATGGAGACGATTCCAAAAGACCGTCAGGGTAAGGTGTCTAAAGGATATCTACGAGCTGTGCTTGACACTGTTGCACCATCGGCCACTTTACCACCAATAGGCGCTGTGTCCCAGATGGATAATATGATAATGGAAGCGTTGAAGATGGTGAATGGAGATGATGGAAATGTGGTGAAGGAAGAAGAGTTTAAGAAAACAATGGCAGAGATATTGGGGAGTATAATGTTGCAGCTCGAGGGTAGTCCCATATCGGTTTCCTCTAACTCGGTGGTTCACGAGCCGCTCACCTCGGCTACCTTTCTGCCGTCAACTTCGACTGATACAGAGGAGCCTTCAAACTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
EF-hand_5 EF-hand_7

Protein Analysis

265

Amino Acids

28.97

Weight (kDa)

4.66

Isoelectric Point (pI)

55.19

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
EF-hand_7 PF13499 35 - 104 2.2e-08 EF-hand domain pair
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 2 cut(s) 399, 739
AccII CGCG 1 cut(s) 287
AciI CCGC 2 cut(s) 399, 737
AclI AACGTT 1 cut(s) 450
AclWI GGATC 2 cut(s) 17, 63
AcoI YGGCCR 1 cut(s) 537
AcsI RAATTY 2 cut(s) 425, 431
AfiI CCNNNNNNNGG 3 cut(s) 43, 393, 554
AgsI TTSAA 3 cut(s) 316, 598, 792
AjnI CCWGG 1 cut(s) 79
AluBI AGCT 4 cut(s) 118, 164, 512, 688
AluI AGCT 4 cut(s) 118, 164, 512, 688
Alw21I GWGCWC 1 cut(s) 120
Alw26I GTCTC 4 cut(s) 177, 294, 350, 455
AlwI GGATC 2 cut(s) 17, 63
Ama87I CYCGRG 1 cut(s) 689
AoxI GGCC 2 cut(s) 76, 537
ApeKI GCWGC 2 cut(s) 5, 685
ApoI RAATTY 2 cut(s) 425, 431
AspLEI GCGC 2 cut(s) 287, 560
AspS9I GGNCC 1 cut(s) 77
AsuHPI GGTGA 5 cut(s) 62, 229, 616, 640, 733
AsuII TTCGAA 1 cut(s) 429
AvaI CYCGRG 1 cut(s) 689
AxyI CCTNAGG 1 cut(s) 38
BanII GRGCYC 1 cut(s) 120
BauI CACGAG 1 cut(s) 731
Bbv12I GWGCWC 1 cut(s) 120
BbvI GCAGC 1 cut(s) 697
BccI CCATC 6 cut(s) 37, 386, 541, 565, 595, 611
BceAI ACGGC 2 cut(s) 91, 745
BciT130I CCWGG 1 cut(s) 81
BclI TGATCA 1 cut(s) 184
BcoDI GTCTC 4 cut(s) 177, 294, 350, 455
BfoI RGCGCY 1 cut(s) 561
BisI GCNGC 3 cut(s) 6, 686, 737
BlpI GCTNAGC 1 cut(s) 339
BlsI GCNGC 3 cut(s) 7, 687, 738
Bme1390I CCNGG 1 cut(s) 81
BmeT110I CYCGRG 1 cut(s) 689
BmgT120I GGNCC 1 cut(s) 77
BmiI GGNNCC 1 cut(s) 786
BmrFI CCNGG 1 cut(s) 81
BmsI GCATC 1 cut(s) 146
BoxI GACNNNNGTC 1 cut(s) 252
BplI GAGNNNNNCTC 4 cut(s) 44, 76, 322, 354
BpmI CTGGAG 2 cut(s) 106, 152
Bpu1102I GCTNAGC 1 cut(s) 339
Bpu14I TTCGAA 1 cut(s) 429
BsaJI CCNNGG 5 cut(s) 73, 79, 212, 456, 744
Bsc4I CCNNNNNNNGG 3 cut(s) 43, 393, 554
Bse1I ACTGG 2 cut(s) 123, 169
Bse21I CCTNAGG 1 cut(s) 38
BseBI CCWGG 1 cut(s) 81
BseDI CCNNGG 5 cut(s) 73, 79, 212, 456, 744
BseGI GGATG 2 cut(s) 33, 48
BseLI CCNNNNNNNGG 3 cut(s) 43, 393, 554
BseMII CTCAG 4 cut(s) 52, 126, 305, 353
BseNI ACTGG 2 cut(s) 123, 169
BseRI GAGGAG 1 cut(s) 797
BseXI GCAGC 1 cut(s) 697
Bsh1236I CGCG 1 cut(s) 287
BshFI GGCC 2 cut(s) 78, 539
BsiHKAI GWGCWC 1 cut(s) 120
BsiHKCI CYCGRG 1 cut(s) 689
BslFI GGGAC 2 cut(s) 550, 684
BslI CCNNNNNNNGG 3 cut(s) 43, 393, 554
BsmAI GTCTC 4 cut(s) 177, 294, 350, 455
BsmBI CGTCTC 3 cut(s) 294, 350, 455
BsmFI GGGAC 2 cut(s) 550, 684
BsmI GAATGC 2 cut(s) 198, 311
BsnI GGCC 2 cut(s) 78, 539
BsoBI CYCGRG 1 cut(s) 689
Bsp119I TTCGAA 1 cut(s) 429
Bsp1286I GDGCHC 1 cut(s) 120
Bsp143I GATC 4 cut(s) 22, 55, 184, 363
Bsp1720I GCTNAGC 1 cut(s) 339
Bsp19I CCATGG 2 cut(s) 212, 456
BspACI CCGC 2 cut(s) 399, 737
BspANI GGCC 2 cut(s) 78, 539
BspCNI CTCAG 4 cut(s) 51, 125, 304, 352
BspFNI CGCG 1 cut(s) 287
BspLI GGNNCC 1 cut(s) 786
BspPI GGATC 2 cut(s) 17, 63
BspT104I TTCGAA 1 cut(s) 429
BsrBI CCGCTC 2 cut(s) 399, 739
BsrI ACTGG 2 cut(s) 123, 169
BssECI CCNNGG 5 cut(s) 73, 79, 212, 456, 744
BssMI GATC 4 cut(s) 22, 55, 184, 363
BssSI CACGAG 1 cut(s) 731
BssT1I CCWWGG 2 cut(s) 212, 456
Bst2BI CACGAG 1 cut(s) 731
Bst2UI CCWGG 1 cut(s) 81
Bst4CI ACNGT 3 cut(s) 50, 479, 526
Bst6I CTCTTC 1 cut(s) 633
BstBI TTCGAA 1 cut(s) 429
BstDEI CTNAG 4 cut(s) 38, 112, 291, 339
BstDSI CCRYGG 3 cut(s) 73, 212, 456
BstF5I GGATG 2 cut(s) 33, 48
BstFNI CGCG 1 cut(s) 287
BstH2I RGCGCY 1 cut(s) 561
BstHHI GCGC 2 cut(s) 287, 560
BstKTI GATC 4 cut(s) 25, 58, 187, 366
BstMAI GTCTC 4 cut(s) 177, 294, 350, 455
BstMBI GATC 4 cut(s) 22, 55, 184, 363
BstMWI GCNNNNNNNGC 1 cut(s) 536
BstNI CCWGG 1 cut(s) 81
BstPAI GACNNNNGTC 1 cut(s) 252
BstSCI CCNGG 1 cut(s) 79
BstUI CGCG 1 cut(s) 287
BstV1I GCAGC 1 cut(s) 697
BstX2I RGATCY 1 cut(s) 55
BstXI CCANNNNNNTGG 1 cut(s) 80
BstYI RGATCY 1 cut(s) 55
Bsu36I CCTNAGG 1 cut(s) 38
BsuRI GGCC 2 cut(s) 78, 539
BtgI CCRYGG 3 cut(s) 73, 212, 456
BtgZI GCGATG 1 cut(s) 123
BtsCI GGATG 2 cut(s) 33, 48
BtsIMutI CAGTG 1 cut(s) 522
CfoI GCGC 2 cut(s) 287, 560
Cfr13I GGNCC 1 cut(s) 77
CseI GACGC 3 cut(s) 143, 276, 332
CviAII CATG 3 cut(s) 188, 213, 457
DdeI CTNAG 4 cut(s) 38, 112, 291, 339
DpnI GATC 4 cut(s) 24, 57, 186, 365
DpnII GATC 4 cut(s) 22, 55, 184, 363
EaeI YGGCCR 1 cut(s) 537
Eam1104I CTCTTC 1 cut(s) 633
EarI CTCTTC 1 cut(s) 633
Ecl136II GAGCTC 1 cut(s) 118
Eco130I CCWWGG 2 cut(s) 212, 456
Eco24I GRGCYC 1 cut(s) 120
Eco32I GATATC 1 cut(s) 503
Eco53kI GAGCTC 1 cut(s) 118
Eco81I CCTNAGG 1 cut(s) 38
Eco88I CYCGRG 1 cut(s) 689
EcoICRI GAGCTC 1 cut(s) 118
EcoRI GAATTC 1 cut(s) 431
EcoRII CCWGG 1 cut(s) 79
EcoRV GATATC 1 cut(s) 503
EcoT14I CCWWGG 2 cut(s) 212, 456
EcoT38I GRGCYC 1 cut(s) 120
ErhI CCWWGG 2 cut(s) 212, 456
Esp3I CGTCTC 3 cut(s) 294, 350, 455
FaeI CATG 3 cut(s) 191, 216, 460
FaiI YATR 7 cut(s) 87, 189, 214, 458, 581, 677, 704
FaqI GGGAC 2 cut(s) 550, 684
FatI CATG 3 cut(s) 187, 212, 456
FbaI TGATCA 1 cut(s) 184
Fnu4HI GCNGC 3 cut(s) 6, 686, 737
FokI GGATG 2 cut(s) 20, 55
FriOI GRGCYC 1 cut(s) 120
Fsp4HI GCNGC 3 cut(s) 6, 686, 737
GlaI GCGC 2 cut(s) 286, 559
GluI GCNGC 3 cut(s) 6, 686, 737
GsuI CTGGAG 2 cut(s) 106, 152
HaeII RGCGCY 1 cut(s) 561
HaeIII GGCC 2 cut(s) 78, 539
HgaI GACGC 3 cut(s) 143, 276, 332
HhaI GCGC 2 cut(s) 287, 560
Hin1II CATG 3 cut(s) 191, 216, 460
Hin6I GCGC 2 cut(s) 285, 558
HinP1I GCGC 2 cut(s) 285, 558
HincII GTYRAC 2 cut(s) 247, 765
HindII GTYRAC 2 cut(s) 247, 765
HinfI GANTC 4 cut(s) 248, 300, 321, 466
HphI GGTGA 5 cut(s) 62, 229, 616, 640, 733
Hpy166II GTNNAC 4 cut(s) 73, 247, 730, 765
Hpy188I TCNGA 3 cut(s) 15, 64, 115
Hpy188III TCNNGA 7 cut(s) 40, 94, 257, 293, 316, 406, 731
Hpy8I GTNNAC 4 cut(s) 73, 247, 730, 765
HpyAV CCTTC 3 cut(s) 210, 625, 798
HpyCH4III ACNGT 3 cut(s) 50, 479, 526
HpyCH4IV ACGT 2 cut(s) 19, 450
HpyCH4V TGCA 2 cut(s) 530, 685
HpyF10VI GCNNNNNNNGC 1 cut(s) 536
HpyF3I CTNAG 4 cut(s) 38, 112, 291, 339
HpySE526I ACGT 2 cut(s) 19, 450
Hsp92II CATG 3 cut(s) 191, 216, 460
HspAI GCGC 2 cut(s) 285, 558
Ksp22I TGATCA 1 cut(s) 184
Kzo9I GATC 4 cut(s) 22, 55, 184, 363
LmnI GCTCC 3 cut(s) 147, 396, 784
LpnPI CCDG 9 cut(s) 25, 66, 93, 136, 182, 278, 391, 467, 581
Lsp1109I GCAGC 1 cut(s) 697
LweI GCATC 1 cut(s) 146
MaeII ACGT 2 cut(s) 19, 450
MalI GATC 4 cut(s) 24, 57, 186, 365
MbiI CCGCTC 2 cut(s) 399, 739
MboI GATC 4 cut(s) 22, 55, 184, 363
MboII GAAGA 5 cut(s) 275, 278, 610, 647, 650
MfeI CAATTG 1 cut(s) 240
MflI RGATCY 1 cut(s) 55
MhlI GDGCHC 1 cut(s) 120
MluCI AATT 3 cut(s) 240, 425, 431
MlyI GAGTC 2 cut(s) 242, 330
MmeI TCCRAC 1 cut(s) 228
MnlI CCTC 8 cut(s) 46, 47, 207, 402, 685, 724, 754, 775
MseI TTAA 1 cut(s) 645
MspR9I CCNGG 1 cut(s) 81
MunI CAATTG 1 cut(s) 240
Mva1269I GAATGC 2 cut(s) 198, 311
MvaI CCWGG 1 cut(s) 81
MvnI CGCG 1 cut(s) 287
MwoI GCNNNNNNNGC 1 cut(s) 536
NcoI CCATGG 2 cut(s) 212, 456
NdeII GATC 4 cut(s) 22, 55, 184, 363
NlaIII CATG 3 cut(s) 191, 216, 460
NlaIV GGNNCC 1 cut(s) 786
NmeAIII GCCGAG 1 cut(s) 725
NspV TTCGAA 1 cut(s) 429
PaeR7I CTCGAG 1 cut(s) 689
PctI GAATGC 2 cut(s) 198, 311
PfeI GAWTC 2 cut(s) 300, 466
PkrI GCNGC 3 cut(s) 7, 687, 738
PleI GAGTC 2 cut(s) 242, 329
PpsI GAGTC 2 cut(s) 242, 329
PshAI GACNNNNGTC 1 cut(s) 252
Psp124BI GAGCTC 1 cut(s) 120
Psp1406I AACGTT 1 cut(s) 450
Psp6I CCWGG 1 cut(s) 79
PspGI CCWGG 1 cut(s) 79
PspN4I GGNNCC 1 cut(s) 786
PspPI GGNCC 1 cut(s) 77
PspXI VCTCGAGB 1 cut(s) 689
PsuI RGATCY 1 cut(s) 55
SacI GAGCTC 1 cut(s) 120
SaqAI TTAA 1 cut(s) 645
SatI GCNGC 3 cut(s) 6, 686, 737
Sau3AI GATC 4 cut(s) 22, 55, 184, 363
Sau96I GGNCC 1 cut(s) 77
SchI GAGTC 2 cut(s) 242, 330
ScrFI CCNGG 1 cut(s) 81
SduI GDGCHC 1 cut(s) 120
SfaNI GCATC 1 cut(s) 146
Sfr274I CTCGAG 1 cut(s) 689
SfuI TTCGAA 1 cut(s) 429
SlaI CTCGAG 1 cut(s) 689
SmlI CTYRAG 1 cut(s) 689
SmoI CTYRAG 1 cut(s) 689
Sse9I AATT 3 cut(s) 240, 425, 431
SsiI CCGC 2 cut(s) 399, 737
SstI GAGCTC 1 cut(s) 120
StyD4I CCNGG 1 cut(s) 79
StyI CCWWGG 2 cut(s) 212, 456
TaaI ACNGT 3 cut(s) 50, 479, 526
TaiI ACGT 2 cut(s) 22, 453
TaqI TCGA 5 cut(s) 93, 429, 435, 690, 770
TasI AATT 3 cut(s) 240, 425, 431
TauI GCSGC 1 cut(s) 739
TfiI GAWTC 2 cut(s) 300, 466
Tru1I TTAA 1 cut(s) 645
Tru9I TTAA 1 cut(s) 645
TscAI CASTG 1 cut(s) 529
TseI GCWGC 2 cut(s) 5, 685
TspDTI ATGAA 3 cut(s) 102, 276, 366
TspGWI ACGGA 1 cut(s) 134
TspRI CASTG 1 cut(s) 529
XapI RAATTY 2 cut(s) 425, 431
XhoI CTCGAG 1 cut(s) 689
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.