Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr5

Orthogroup ID

OG0009469

Physical Location & Seq

Genomic Coordinates Forward (+)

14378769 .. 14381745

Gene Structure 2977 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom05g10920.4

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1104 bp

ATGGAGAAGAAAAGTGAGAGTGGGAGTGGTGGTGGACAGGTGGTGGACGGTTCGAATATAATGGAGTTGGTTGGGAACGAGGAGGTGTTTAGTAACTTTGTGGAGCATAAGTTTGAGGAGCTCGACAGGGACAGAGACGGCCACCTCTCTTTGAACGAGCTCCACCCTGCTGTCGCCGATATTGGCCTTGCTCTTGGCTTGCCGGCTCAGGGTTCTTCCCGGGACTCCGATCACATCTATTCTGAGGTATTGAATGAGTTCACTCATGGGAAACAACAAAAAGTGAGCAAGACAGAGTTCAAAGAGGTTCTTTCGGATATTCTAATAGGCATGGCTGCTGGTTTCAAGCGAGACCCTATTGTGATCCTCCGTATTGATGGAGAAGACCTCCTAGAATACATCGATGGGCCAATTTTTGAACCAGAGCTGGTGGCTACATATTCTGAGATAAAGTCAGCTGATGGAACTCTCCGTGACTGTATAATCAAAGCTTTGGAAAAACTCACGGTTGACCAAGGGATGCCCCCTTCATTGGATTCTTGGATTGTGAGCAATATTGTGGAACCTGCTCTGCAATCATGCACTGGCCATGATTTGGACAAGCCGGTTTCTCAAGATACGTTCATAGCAGAATTCAAAAAAGTAGCAGAGTTTGTGGCTCATCGTCTTCAGGAGCAGCCTGTGATTGTAGCCCACAGTGAGAATGACTTTGATGGAAGCGACATCAAGAGATTGTTGTCCAACAAGTTTGAATTAGACAAGACACTGAATGCAGCTATTGAAACTGTTCCAAAAGACCGCAGTGGGAAATTATCCAAAGAATATTTGCGTGTGGCACTGGAAGCGGTGGCTCCAACAGCTGGTCTGCCACCAGTTGGTGCAGTTGAGCAGATGGACAAGGTTGTGCAGGATGCGTTCAACATGTTTAACGCAGATGACGGAAAGCAGCTTAAGGAAGACGAGTTCAAGAAGACACTGACTGAAATCCTGGGGAGTATCATGTTGCAATTGGAGGGAAACCCAATCTCAGTTCACTCAAATGCGGTTGTGCACGAGCCCCTCACCGCTGCTTCTACTCTACTGCAGCCAACTCTCGACTTATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

EF-hand_5 EF-hand_7

Protein Analysis

368

Amino Acids

40.22

Weight (kDa)

4.64

Isoelectric Point (pI)

43.58

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0009469)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G38810 AT4G38810
fragaria_vesca	FvH4_2g02210 FvH4_2g02210
malus_domestica	MD05G1114400.v1.1 MD10G1116400.v1.1
prunus_persica	Prupe.8G158800_v2.0.a1 Prupe.8G158800_v2.0.a1
pyrus_communis	pycom05g10920 pycom10g10110
rosa_chinensis	RchiOBHm_Chr6g0245891
rosa_laevigata	RLG00000015292
rosa_multiflora	Rmu_sc0005570.1_g000011
rosa_roxburghii	Rroxscaffold_7G00215120
rosa_rugosa	Rorug05G0516400
rosa_samantha	Rh6AG031300 Rh6BG027800 Rh6CG027300 Rh6CG027600 Rh6DG026500 Rh6DG026700
rosa_wichuraiana	Rw6G002630

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	574
AccB7I	CCANNNNNTGG	3 cut(s)	595, 860, 875
AciI	CCGC	4 cut(s)	799, 845, 1043, 1065
AclWI	GGATC	1 cut(s)	358
AcoI	YGGCCR	2 cut(s)	139, 586
AcsI	RAATTY	1 cut(s)	632
AcuI	CTGAAG	1 cut(s)	653
AfiI	CCNNNNNNNGG	5 cut(s)	209, 532, 595, 860, 875
AflII	CTTAAG	1 cut(s)	950
AflIII	ACRYGT	1 cut(s)	921
AjnI	CCWGG	1 cut(s)	987
AloI	GAACNNNNNNTCC	2 cut(s)	947, 979
AluBI	AGCT	8 cut(s)	121, 160, 427, 458, 491, 776, 860, 949
AluI	AGCT	8 cut(s)	121, 160, 427, 458, 491, 776, 860, 949
Alw21I	GWGCWC	3 cut(s)	123, 162, 1053
Alw26I	GTCTC	2 cut(s)	129, 345
Alw44I	GTGCAC	1 cut(s)	1049
AlwI	GGATC	1 cut(s)	358
Ama87I	CYCGRG	1 cut(s)	219
AoxI	GGCC	4 cut(s)	139, 184, 407, 586
ApaLI	GTGCAC	1 cut(s)	1049
ApeKI	GCWGC	6 cut(s)	335, 676, 773, 946, 1067, 1084
ApoI	RAATTY	1 cut(s)	632
Asp700I	GAANNNNTTC	2 cut(s)	257, 786
AspS9I	GGNCC	1 cut(s)	407
AsuC2I	CCSGG	2 cut(s)	220, 221
AsuHPI	GGTGA	1 cut(s)	1054
AsuII	TTCGAA	1 cut(s)	53
AvaI	CYCGRG	1 cut(s)	219
BaeGI	GKGCMC	1 cut(s)	1053
BalI	TGGCCA	1 cut(s)	588
BanII	GRGCYC	3 cut(s)	123, 162, 1059
BauI	CACGAG	1 cut(s)	1052
BbsI	GAAGAC	4 cut(s)	390, 659, 963, 977
Bbv12I	GWGCWC	3 cut(s)	123, 162, 1053
BbvI	GCAGC	6 cut(s)	322, 688, 785, 958, 1054, 1096
BccI	CCATC	5 cut(s)	371, 398, 455, 707, 886
BceAI	ACGGC	1 cut(s)	154
BciT130I	CCWGG	1 cut(s)	989
BcnI	CCSGG	2 cut(s)	220, 221
BcoDI	GTCTC	2 cut(s)	129, 345
BfaI	CTAG	1 cut(s)	392
BfmI	CTRYAG	1 cut(s)	1082
BfrI	CTTAAG	1 cut(s)	950
BfuAI	ACCTGC	1 cut(s)	574
BisI	GCNGC	6 cut(s)	336, 677, 774, 947, 1068, 1085
BlsI	GCNGC	6 cut(s)	337, 678, 775, 948, 1069, 1086
Bme1390I	CCNGG	3 cut(s)	220, 221, 989
BmeT110I	CYCGRG	1 cut(s)	219
BmgT120I	GGNCC	1 cut(s)	407
BmiI	GGNNCC	2 cut(s)	564, 852
BmrFI	CCNGG	3 cut(s)	220, 221, 989
BmsI	GCATC	2 cut(s)	510, 901
BpiI	GAAGAC	4 cut(s)	390, 659, 963, 977
BplI	GAGNNNNNCTC	2 cut(s)	372, 404
Bpu10I	CCTNAGC	1 cut(s)	207
Bpu14I	TTCGAA	1 cut(s)	53
BpuEI	CTTGAG	1 cut(s)	597
BpuMI	CCSGG	2 cut(s)	220, 221
Bsa29I	ATCGAT	1 cut(s)	402
BsaI	GGTCTC	1 cut(s)	345
BsaJI	CCNNGG	3 cut(s)	219, 514, 988
BsaXI	ACNNNNNCTCC	4 cut(s)	16, 46, 95, 125
Bsc4I	CCNNNNNNNGG	5 cut(s)	209, 532, 595, 860, 875
Bse118I	RCCGGY	2 cut(s)	202, 604
Bse1I	ACTGG	3 cut(s)	589, 843, 872
BseBI	CCWGG	1 cut(s)	989
BseCI	ATCGAT	1 cut(s)	402
BseDI	CCNNGG	3 cut(s)	219, 514, 988
BseGI	GGATG	2 cut(s)	525, 916
BseLI	CCNNNNNNNGG	5 cut(s)	209, 532, 595, 860, 875
BseMII	CTCAG	4 cut(s)	221, 234, 435, 1041
BseNI	ACTGG	3 cut(s)	589, 843, 872
BseRI	GAGGAG	2 cut(s)	95, 131
BseSI	GKGCMC	1 cut(s)	1053
BseXI	GCAGC	6 cut(s)	322, 688, 785, 958, 1054, 1096
BsgI	GTGCAG	2 cut(s)	900, 926
BshFI	GGCC	4 cut(s)	141, 186, 409, 588
BshVI	ATCGAT	1 cut(s)	402
BsiHKAI	GWGCWC	3 cut(s)	123, 162, 1053
BsiHKCI	CYCGRG	1 cut(s)	219
BsiSI	CCGG	3 cut(s)	203, 220, 605
BslFI	GGGAC	2 cut(s)	143, 236
BslI	CCNNNNNNNGG	5 cut(s)	209, 532, 595, 860, 875
BsmAI	GTCTC	2 cut(s)	129, 345
BsmBI	CGTCTC	1 cut(s)	129
BsmFI	GGGAC	2 cut(s)	143, 236
BsmI	GAATGC	1 cut(s)	775
BsnI	GGCC	4 cut(s)	141, 186, 409, 588
Bso31I	GGTCTC	1 cut(s)	345
BsoBI	CYCGRG	1 cut(s)	219
Bsp119I	TTCGAA	1 cut(s)	53
Bsp1286I	GDGCHC	4 cut(s)	123, 162, 1053, 1059
Bsp143I	GATC	2 cut(s)	229, 363
BspACI	CCGC	4 cut(s)	799, 845, 1043, 1065
BspANI	GGCC	4 cut(s)	141, 186, 409, 588
BspCNI	CTCAG	4 cut(s)	220, 235, 436, 1040
BspDI	ATCGAT	1 cut(s)	402
BspLI	GGNNCC	2 cut(s)	564, 852
BspMAI	CTGCAG	1 cut(s)	1086
BspMI	ACCTGC	1 cut(s)	574
BspPI	GGATC	1 cut(s)	358
BspT104I	TTCGAA	1 cut(s)	53
BspTI	CTTAAG	1 cut(s)	950
BspTNI	GGTCTC	1 cut(s)	345
BsrFI	RCCGGY	2 cut(s)	202, 604
BsrI	ACTGG	3 cut(s)	589, 843, 872
BssAI	RCCGGY	2 cut(s)	202, 604
BssECI	CCNNGG	3 cut(s)	219, 514, 988
BssMI	GATC	2 cut(s)	229, 363
BssSI	CACGAG	1 cut(s)	1052
BssT1I	CCWWGG	1 cut(s)	514
Bst2BI	CACGAG	1 cut(s)	1052
Bst2UI	CCWGG	1 cut(s)	989
Bst4CI	ACNGT	5 cut(s)	50, 479, 508, 698, 787
BstAFI	CTTAAG	1 cut(s)	950
BstBI	TTCGAA	1 cut(s)	53
BstC8I	GCNNGC	2 cut(s)	200, 204
BstDEI	CTNAG	4 cut(s)	207, 243, 444, 1027
BstF5I	GGATG	2 cut(s)	525, 916
BstKTI	GATC	2 cut(s)	232, 366
BstMAI	GTCTC	2 cut(s)	129, 345
BstMBI	GATC	2 cut(s)	229, 363
BstMWI	GCNNNNNNNGC	2 cut(s)	842, 857
BstNI	CCWGG	1 cut(s)	989
BstNSI	RCATGY	1 cut(s)	925
BstSCI	CCNGG	3 cut(s)	218, 219, 987
BstSFI	CTRYAG	1 cut(s)	1082
BstSLI	GKGCMC	1 cut(s)	1053
BstV1I	GCAGC	6 cut(s)	322, 688, 785, 958, 1054, 1096
BstV2I	GAAGAC	4 cut(s)	390, 659, 963, 977
Bsu15I	ATCGAT	1 cut(s)	402
BsuRI	GGCC	4 cut(s)	141, 186, 409, 588
BsuTUI	ATCGAT	1 cut(s)	402
BtsCI	GGATG	2 cut(s)	525, 916
BtsI	GCAGTG	1 cut(s)	808
BtsIMutI	CAGTG	6 cut(s)	582, 703, 764, 808, 836, 974
BveI	ACCTGC	1 cut(s)	574
Cac8I	GCNNGC	2 cut(s)	200, 204
Cfr10I	RCCGGY	2 cut(s)	202, 604
Cfr13I	GGNCC	1 cut(s)	407
Cfr9I	CCCGGG	1 cut(s)	219
ClaI	ATCGAT	1 cut(s)	402
CviAII	CATG	6 cut(s)	266, 331, 579, 590, 922, 1000
DdeI	CTNAG	4 cut(s)	207, 243, 444, 1027
DpnI	GATC	2 cut(s)	231, 365
DpnII	GATC	2 cut(s)	229, 363
EaeI	YGGCCR	2 cut(s)	139, 586
Ecl136II	GAGCTC	2 cut(s)	121, 160
Eco130I	CCWWGG	1 cut(s)	514
Eco24I	GRGCYC	3 cut(s)	123, 162, 1059
Eco31I	GGTCTC	1 cut(s)	345
Eco53kI	GAGCTC	2 cut(s)	121, 160
Eco57I	CTGAAG	1 cut(s)	653
Eco88I	CYCGRG	1 cut(s)	219
EcoICRI	GAGCTC	2 cut(s)	121, 160
EcoRI	GAATTC	1 cut(s)	632
EcoRII	CCWGG	1 cut(s)	987
EcoT14I	CCWWGG	1 cut(s)	514
EcoT38I	GRGCYC	3 cut(s)	123, 162, 1059
ErhI	CCWWGG	1 cut(s)	514
Esp3I	CGTCTC	1 cut(s)	129
FaeI	CATG	6 cut(s)	269, 334, 582, 593, 925, 1003
FalI	AAGNNNNNCTT	2 cut(s)	294, 326
FaqI	GGGAC	2 cut(s)	143, 236
FatI	CATG	6 cut(s)	265, 330, 578, 589, 921, 999
Fnu4HI	GCNGC	6 cut(s)	336, 677, 774, 947, 1068, 1085
FokI	GGATG	2 cut(s)	532, 923
FriOI	GRGCYC	3 cut(s)	123, 162, 1059
Fsp4HI	GCNGC	6 cut(s)	336, 677, 774, 947, 1068, 1085
FspBI	CTAG	1 cut(s)	392
GluI	GCNGC	6 cut(s)	336, 677, 774, 947, 1068, 1085
HaeIII	GGCC	4 cut(s)	141, 186, 409, 588
HapII	CCGG	3 cut(s)	203, 220, 605
Hin1II	CATG	6 cut(s)	269, 334, 582, 593, 925, 1003
HincII	GTYRAC	1 cut(s)	511
HindII	GTYRAC	1 cut(s)	511
HindIII	AAGCTT	1 cut(s)	489
HinfI	GANTC	2 cut(s)	224, 536
HpaII	CCGG	3 cut(s)	203, 220, 605
HphI	GGTGA	1 cut(s)	1054
Hpy166II	GTNNAC	6 cut(s)	35, 46, 261, 511, 1033, 1051
Hpy188I	TCNGA	4 cut(s)	229, 244, 316, 445
Hpy188III	TCNNGA	5 cut(s)	614, 671, 727, 967, 1094
Hpy8I	GTNNAC	6 cut(s)	35, 46, 261, 511, 1033, 1051
HpyAV	CCTTC	1 cut(s)	537
HpyCH4III	ACNGT	5 cut(s)	50, 479, 508, 698, 787
HpyCH4IV	ACGT	1 cut(s)	620
HpyCH4V	TGCA	8 cut(s)	574, 582, 773, 881, 907, 1006, 1051, 1084
HpyF10VI	GCNNNNNNNGC	2 cut(s)	842, 857
HpyF3I	CTNAG	4 cut(s)	207, 243, 444, 1027
HpySE526I	ACGT	1 cut(s)	620
Hsp92II	CATG	6 cut(s)	269, 334, 582, 593, 925, 1003
KroI	GCCGGC	1 cut(s)	202
KroNI	GCCGGC	1 cut(s)	204
Kzo9I	GATC	2 cut(s)	229, 363
LmnI	GCTCC	5 cut(s)	103, 118, 165, 673, 856
Lsp1109I	GCAGC	6 cut(s)	322, 688, 785, 958, 1054, 1096
LweI	GCATC	2 cut(s)	510, 901
MaeI	CTAG	1 cut(s)	392
MaeII	ACGT	1 cut(s)	620
MaeIII	GTNAC	2 cut(s)	92, 473
MalI	GATC	2 cut(s)	231, 365
MboI	GATC	2 cut(s)	229, 363
MboII	GAAGA	6 cut(s)	19, 207, 395, 659, 968, 982
MfeI	CAATTG	1 cut(s)	1007
MhlI	GDGCHC	4 cut(s)	123, 162, 1053, 1059
MlsI	TGGCCA	1 cut(s)	588
MluCI	AATT	5 cut(s)	411, 632, 752, 809, 1007
MluNI	TGGCCA	1 cut(s)	588
MlyI	GAGTC	1 cut(s)	218
MmeI	TCCRAC	2 cut(s)	765, 878
Mox20I	TGGCCA	1 cut(s)	588
MroNI	GCCGGC	1 cut(s)	202
MroXI	GAANNNNTTC	2 cut(s)	257, 786
MscI	TGGCCA	1 cut(s)	588
MseI	TTAA	2 cut(s)	927, 951
MslI	CAYNNNNRTG	1 cut(s)	1038
Msp20I	TGGCCA	1 cut(s)	588
MspA1I	CMGCKG	3 cut(s)	458, 860, 1067
MspCI	CTTAAG	1 cut(s)	950
MspI	CCGG	3 cut(s)	203, 220, 605
MspR9I	CCNGG	3 cut(s)	220, 221, 989
MunI	CAATTG	1 cut(s)	1007
Mva1269I	GAATGC	1 cut(s)	775
MvaI	CCWGG	1 cut(s)	989
MwoI	GCNNNNNNNGC	2 cut(s)	842, 857
NaeI	GCCGGC	1 cut(s)	204
NciI	CCSGG	2 cut(s)	220, 221
NdeII	GATC	2 cut(s)	229, 363
NgoMIV	GCCGGC	1 cut(s)	202
NlaIII	CATG	6 cut(s)	269, 334, 582, 593, 925, 1003
NlaIV	GGNNCC	2 cut(s)	564, 852
NmuCI	GTSAC	1 cut(s)	473
NspI	RCATGY	1 cut(s)	925
NspV	TTCGAA	1 cut(s)	53
PciI	ACATGT	1 cut(s)	921
PctI	GAATGC	1 cut(s)	775
PdiI	GCCGGC	1 cut(s)	204
PdmI	GAANNNNTTC	2 cut(s)	257, 786
PfeI	GAWTC	1 cut(s)	536
PflMI	CCANNNNNTGG	3 cut(s)	595, 860, 875
PkrI	GCNGC	6 cut(s)	337, 678, 775, 948, 1069, 1086
PleI	GAGTC	1 cut(s)	218
PpsI	GAGTC	1 cut(s)	218
PscI	ACATGT	1 cut(s)	921
Psp124BI	GAGCTC	2 cut(s)	123, 162
Psp6I	CCWGG	1 cut(s)	987
PspGI	CCWGG	1 cut(s)	987
PspN4I	GGNNCC	2 cut(s)	564, 852
PspPI	GGNCC	1 cut(s)	407
PstI	CTGCAG	1 cut(s)	1086
PvuII	CAGCTG	2 cut(s)	458, 860
RseI	CAYNNNNRTG	1 cut(s)	1038
SacI	GAGCTC	2 cut(s)	123, 162
SaqAI	TTAA	2 cut(s)	927, 951
SatI	GCNGC	6 cut(s)	336, 677, 774, 947, 1068, 1085
Sau3AI	GATC	2 cut(s)	229, 363
Sau96I	GGNCC	1 cut(s)	407
SchI	GAGTC	1 cut(s)	218
ScrFI	CCNGG	3 cut(s)	220, 221, 989
SduI	GDGCHC	4 cut(s)	123, 162, 1053, 1059
SfaNI	GCATC	2 cut(s)	510, 901
SfcI	CTRYAG	1 cut(s)	1082
SfuI	TTCGAA	1 cut(s)	53
SmaI	CCCGGG	1 cut(s)	221
SmiMI	CAYNNNNRTG	1 cut(s)	1038
SmlI	CTYRAG	2 cut(s)	612, 950
SmoI	CTYRAG	2 cut(s)	612, 950
Sse9I	AATT	5 cut(s)	411, 632, 752, 809, 1007
SsiI	CCGC	4 cut(s)	799, 845, 1043, 1065
SspI	AATATT	2 cut(s)	556, 824
SspMI	CTAG	1 cut(s)	392
SstI	GAGCTC	2 cut(s)	123, 162
StyD4I	CCNGG	3 cut(s)	218, 219, 987
StyI	CCWWGG	1 cut(s)	514
TaaI	ACNGT	5 cut(s)	50, 479, 508, 698, 787
TaiI	ACGT	1 cut(s)	623
TaqI	TCGA	4 cut(s)	53, 123, 402, 1095
TasI	AATT	5 cut(s)	411, 632, 752, 809, 1007
TfiI	GAWTC	1 cut(s)	536
Tru1I	TTAA	2 cut(s)	927, 951
Tru9I	TTAA	2 cut(s)	927, 951
TscAI	CASTG	6 cut(s)	589, 703, 771, 808, 843, 981
TseFI	GTSAC	1 cut(s)	473
TseI	GCWGC	6 cut(s)	335, 676, 773, 946, 1067, 1084
Tsp45I	GTSAC	1 cut(s)	473
TspDTI	ATGAA	2 cut(s)	519, 613
TspGWI	ACGGA	3 cut(s)	359, 461, 954
TspMI	CCCGGG	1 cut(s)	219
TspRI	CASTG	6 cut(s)	589, 703, 771, 808, 843, 981
Van91I	CCANNNNNTGG	3 cut(s)	595, 860, 875
Vha464I	CTTAAG	1 cut(s)	950
VneI	GTGCAC	1 cut(s)	1049
XapI	RAATTY	1 cut(s)	632
XceI	RCATGY	1 cut(s)	925
XmaI	CCCGGG	1 cut(s)	219
XmnI	GAANNNNTTC	2 cut(s)	257, 786
XspI	CTAG	1 cut(s)	392

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.