Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0005570.1

Orthogroup ID

OG0009469

Physical Location & Seq

Genomic Coordinates Forward (+)

36505 .. 39569

Gene Structure 3065 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0005570.1_g000011.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1107 bp

atggagacgaatccaaagaagactggcactagtgggggagaggttctagacggttcggatataatggagttggttgagaacaaagaggtgttcagccacttcgtggaccataagtttgaggagctggatagagacagagatggtcagctttctgtgaacgagcttcagcctgctgttgctgatattggtgctgctcttggcttacctgttcagggctcttcccctgactctgaccacatctactctgaggtattgaatgaattcactcatggcaaacaagaaaaagtgagcaaggtcgagttcaaagaagttctttctgatattctactaggcatggctgctggtttgaagcgagaccctattgtgattctccgcattgatggagaagacctcctagaatacatcaatggaccaacttttgaagcagaaatggtggctgcacactctctgatagagtcagctgctggaaccctccaagactgtattatcaaagcttttgaactgctcacagttgaacaagggatgcccccttcatcagacccttgggttgtgagcaatattgtggaacctgctctgcaatcatgtgctggccctgactggaacaagcctgtctctcaagaaacattcctagttgaattcaagaaagtggccgagcatgtggctcaacttcttagggagcagcatgtgattgtagcccacagtgaaaatacctttgatggaagtggcattaagagattattatccaacaagtttgaattagacaagacattgaatgcagctattgagactctgccaaaagatcgcactgggaaaatatcgaaggagtatttgcgtgttgcgctggatgccgtggctccatcagctggtcttccgcctcttggtgcagttgagcagatggacaagattgttttggatgtgttcaacctgacgaatgcagatgatgcaaagctgcttaaagaagacgagttcaagaagatattaactgaaatcctggggagtatcatgttgcaattggagggcagtcccatctctgtttattctaattcagtcgtgcacgagccccttgccgctgcttcgacacttttgcaagtacagccatctgcctag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

EF-hand_5 EF-hand_7

Protein Analysis

368

Amino Acids

40.06

Weight (kDa)

4.62

Isoelectric Point (pI)

41.3

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009469)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G38810 AT4G38810
fragaria_vesca	FvH4_2g02210 FvH4_2g02210
malus_domestica	MD05G1114400.v1.1 MD10G1116400.v1.1
prunus_persica	Prupe.8G158800_v2.0.a1 Prupe.8G158800_v2.0.a1
pyrus_communis	pycom05g10920 pycom10g10110
rosa_chinensis	RchiOBHm_Chr6g0245891
rosa_laevigata	RLG00000015292
rosa_multiflora	Rmu_sc0005570.1_g000011
rosa_roxburghii	Rroxscaffold_7G00215120
rosa_rugosa	Rorug05G0516400
rosa_samantha	Rh6AG031300 Rh6BG027800 Rh6CG027300 Rh6CG027600 Rh6DG026500 Rh6DG026700
rosa_wichuraiana	Rw6G002630

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	577
AccB7I	CCANNNNNTGG	2 cut(s)	103, 863
AciI	CCGC	3 cut(s)	373, 872, 1068
AcoI	YGGCCR	1 cut(s)	648
AcsI	RAATTY	2 cut(s)	260, 635
AcuI	CTGAAG	1 cut(s)	149
AdeI	CACNNNGTG	1 cut(s)	103
AfaI	GTAC	1 cut(s)	1092
AfiI	CCNNNNNNNGG	4 cut(s)	103, 212, 863, 878
AhlI	ACTAGT	1 cut(s)	29
AjnI	CCWGG	1 cut(s)	990
AluBI	AGCT	8 cut(s)	124, 148, 163, 461, 494, 779, 863, 949
AluI	AGCT	8 cut(s)	124, 148, 163, 461, 494, 779, 863, 949
Alw21I	GWGCWC	1 cut(s)	1056
Alw26I	GTCTC	4 cut(s)	126, 348, 616, 779
Alw44I	GTGCAC	1 cut(s)	1052
AlwNI	CAGNNNCTG	1 cut(s)	464
AoxI	GGCC	2 cut(s)	589, 648
ApaLI	GTGCAC	1 cut(s)	1052
ApeKI	GCWGC	8 cut(s)	191, 338, 437, 461, 679, 776, 949, 1070
ApoI	RAATTY	2 cut(s)	260, 635
ArsI	GACNNNNNNTTYG	2 cut(s)	98, 130
Asp700I	GAANNNNTTC	1 cut(s)	260
AspLEI	GCGC	1 cut(s)	841
AspS9I	GGNCC	3 cut(s)	106, 410, 590
AvaII	GGWCC	2 cut(s)	106, 410
BaeGI	GKGCMC	1 cut(s)	1056
BanII	GRGCYC	2 cut(s)	218, 1062
BauI	CACGAG	1 cut(s)	1055
BbsI	GAAGAC	4 cut(s)	26, 393, 860, 966
Bbv12I	GWGCWC	1 cut(s)	1056
BbvI	GCAGC	8 cut(s)	178, 325, 424, 448, 691, 788, 936, 1057
BccI	CCATC	7 cut(s)	134, 374, 710, 865, 889, 1034, 1105
BceAI	ACGGC	1 cut(s)	833
BcgI	CGANNNNNNTGC	4 cut(s)	1046, 1066, 1080, 1100
BciT130I	CCWGG	1 cut(s)	992
BcoDI	GTCTC	4 cut(s)	126, 348, 616, 779
BcuI	ACTAGT	1 cut(s)	29
BfaI	CTAG	6 cut(s)	30, 47, 329, 395, 629, 1105
BfuAI	ACCTGC	1 cut(s)	577
BisI	GCNGC	9 cut(s)	192, 339, 438, 462, 680, 777, 950, 1068, 1071
BlsI	GCNGC	9 cut(s)	193, 340, 439, 463, 681, 778, 951, 1069, 1072
Bme1390I	CCNGG	1 cut(s)	992
Bme18I	GGWCC	2 cut(s)	106, 410
BmgT120I	GGNCC	3 cut(s)	106, 410, 590
BmiI	GGNNCC	3 cut(s)	469, 567, 855
BmrFI	CCNGG	1 cut(s)	992
BmrI	ACTGGG	1 cut(s)	816
BmsI	GCATC	3 cut(s)	513, 835, 931
BmuI	ACTGGG	1 cut(s)	816
BpiI	GAAGAC	4 cut(s)	26, 393, 860, 966
BplI	GAGNNNNNCTC	2 cut(s)	375, 407
BpuEI	CTTGAG	1 cut(s)	600
BsaBI	GATNNNNATC	1 cut(s)	739
BsaI	GGTCTC	1 cut(s)	348
BsaJI	CCNNGG	3 cut(s)	542, 849, 991
Bsc4I	CCNNNNNNNGG	4 cut(s)	103, 212, 863, 878
Bse1I	ACTGG	3 cut(s)	28, 602, 811
Bse8I	GATNNNNATC	1 cut(s)	739
BseBI	CCWGG	1 cut(s)	992
BseDI	CCNNGG	3 cut(s)	542, 849, 991
BseGI	GGATG	3 cut(s)	528, 850, 919
BseJI	GATNNNNATC	1 cut(s)	739
BseLI	CCNNNNNNNGG	4 cut(s)	103, 212, 863, 878
BseMII	CTCAG	1 cut(s)	237
BseNI	ACTGG	3 cut(s)	28, 602, 811
BseRI	GAGGAG	1 cut(s)	134
BseSI	GKGCMC	1 cut(s)	1056
BseXI	GCAGC	8 cut(s)	178, 325, 424, 448, 691, 788, 936, 1057
BsgI	GTGCAG	2 cut(s)	423, 903
BshFI	GGCC	2 cut(s)	591, 650
BsiHKAI	GWGCWC	1 cut(s)	1056
BslFI	GGGAC	1 cut(s)	1008
BslI	CCNNNNNNNGG	4 cut(s)	103, 212, 863, 878
BsmAI	GTCTC	4 cut(s)	126, 348, 616, 779
BsmFI	GGGAC	1 cut(s)	1008
BsmI	GAATGC	2 cut(s)	778, 937
BsnI	GGCC	2 cut(s)	591, 650
Bso31I	GGTCTC	1 cut(s)	348
Bsp1286I	GDGCHC	3 cut(s)	218, 1056, 1062
Bsp143I	GATC	1 cut(s)	799
BspACI	CCGC	3 cut(s)	373, 872, 1068
BspANI	GGCC	2 cut(s)	591, 650
BspCNI	CTCAG	1 cut(s)	238
BspLI	GGNNCC	3 cut(s)	469, 567, 855
BspMI	ACCTGC	1 cut(s)	577
BspQI	GCTCTTC	1 cut(s)	223
BspTNI	GGTCTC	1 cut(s)	348
BsrI	ACTGG	3 cut(s)	28, 602, 811
BssECI	CCNNGG	3 cut(s)	542, 849, 991
BssMI	GATC	1 cut(s)	799
BssSI	CACGAG	1 cut(s)	1055
BssT1I	CCWWGG	1 cut(s)	542
Bst2BI	CACGAG	1 cut(s)	1055
Bst2UI	CCWGG	1 cut(s)	992
Bst4CI	ACNGT	4 cut(s)	53, 482, 511, 701
Bst6I	CTCTTC	1 cut(s)	223
BstAPI	GCANNNNNTGC	1 cut(s)	941
BstC8I	GCNNGC	2 cut(s)	171, 589
BstDEI	CTNAG	2 cut(s)	246, 671
BstDSI	CCRYGG	1 cut(s)	849
BstF5I	GGATG	3 cut(s)	528, 850, 919
BstHHI	GCGC	1 cut(s)	841
BstKTI	GATC	1 cut(s)	802
BstMAI	GTCTC	4 cut(s)	126, 348, 616, 779
BstMBI	GATC	1 cut(s)	799
BstMWI	GCNNNNNNNGC	5 cut(s)	838, 845, 860, 941, 1093
BstNI	CCWGG	1 cut(s)	992
BstNSI	RCATGY	2 cut(s)	659, 686
BstSCI	CCNGG	1 cut(s)	990
BstSLI	GKGCMC	1 cut(s)	1056
BstV1I	GCAGC	8 cut(s)	178, 325, 424, 448, 691, 788, 936, 1057
BstV2I	GAAGAC	4 cut(s)	26, 393, 860, 966
BsuRI	GGCC	2 cut(s)	591, 650
BtgI	CCRYGG	1 cut(s)	849
BtsCI	GGATG	3 cut(s)	528, 850, 919
BtsIMutI	CAGTG	2 cut(s)	706, 804
BveI	ACCTGC	1 cut(s)	577
Cac8I	GCNNGC	2 cut(s)	171, 589
CaiI	CAGNNNCTG	1 cut(s)	464
CfoI	GCGC	1 cut(s)	841
Cfr13I	GGNCC	3 cut(s)	106, 410, 590
Csp6I	GTAC	1 cut(s)	1091
CviAII	CATG	6 cut(s)	269, 334, 582, 656, 683, 1003
CviQI	GTAC	1 cut(s)	1091
DdeI	CTNAG	2 cut(s)	246, 671
DpnI	GATC	1 cut(s)	801
DpnII	GATC	1 cut(s)	799
DraIII	CACNNNGTG	1 cut(s)	103
EaeI	YGGCCR	1 cut(s)	648
Eam1104I	CTCTTC	1 cut(s)	223
EarI	CTCTTC	1 cut(s)	223
EciI	GGCGGA	1 cut(s)	861
Eco130I	CCWWGG	1 cut(s)	542
Eco24I	GRGCYC	2 cut(s)	218, 1062
Eco31I	GGTCTC	1 cut(s)	348
Eco47I	GGWCC	2 cut(s)	106, 410
Eco57I	CTGAAG	1 cut(s)	149
EcoRI	GAATTC	2 cut(s)	260, 635
EcoRII	CCWGG	1 cut(s)	990
EcoT14I	CCWWGG	1 cut(s)	542
EcoT38I	GRGCYC	2 cut(s)	218, 1062
ErhI	CCWWGG	1 cut(s)	542
FaeI	CATG	6 cut(s)	272, 337, 585, 659, 686, 1006
FaiI	YATR	8 cut(s)	62, 111, 270, 335, 583, 657, 684, 1004
FalI	AAGNNNNNCTT	2 cut(s)	297, 329
FaqI	GGGAC	1 cut(s)	1008
FatI	CATG	6 cut(s)	268, 333, 581, 655, 682, 1002
Fnu4HI	GCNGC	9 cut(s)	192, 339, 438, 462, 680, 777, 950, 1068, 1071
FokI	GGATG	3 cut(s)	535, 857, 926
FriOI	GRGCYC	2 cut(s)	218, 1062
Fsp4HI	GCNGC	9 cut(s)	192, 339, 438, 462, 680, 777, 950, 1068, 1071
FspBI	CTAG	6 cut(s)	30, 47, 329, 395, 629, 1105
GlaI	GCGC	1 cut(s)	840
GluI	GCNGC	9 cut(s)	192, 339, 438, 462, 680, 777, 950, 1068, 1071
HaeIII	GGCC	2 cut(s)	591, 650
HhaI	GCGC	1 cut(s)	841
Hin1II	CATG	6 cut(s)	272, 337, 585, 659, 686, 1006
Hin6I	GCGC	1 cut(s)	839
HinP1I	GCGC	1 cut(s)	839
HindIII	AAGCTT	1 cut(s)	492
HinfI	GANTC	5 cut(s)	10, 227, 367, 455, 787
Hpy166II	GTNNAC	3 cut(s)	106, 157, 1054
Hpy188I	TCNGA	6 cut(s)	58, 232, 247, 319, 450, 538
Hpy188III	TCNNGA	4 cut(s)	47, 617, 640, 970
Hpy8I	GTNNAC	3 cut(s)	106, 157, 1054
HpyAV	CCTTC	2 cut(s)	540, 814
HpyCH4III	ACNGT	4 cut(s)	53, 482, 511, 701
HpyCH4V	TGCA	9 cut(s)	440, 577, 776, 884, 935, 944, 1009, 1054, 1087
HpyF10VI	GCNNNNNNNGC	5 cut(s)	838, 845, 860, 941, 1093
HpyF3I	CTNAG	2 cut(s)	246, 671
Hsp92II	CATG	6 cut(s)	272, 337, 585, 659, 686, 1006
HspAI	GCGC	1 cut(s)	839
Kzo9I	GATC	1 cut(s)	799
LguI	GCTCTTC	1 cut(s)	223
LmnI	GCTCC	3 cut(s)	121, 676, 859
Lsp1109I	GCAGC	8 cut(s)	178, 325, 424, 448, 691, 788, 936, 1057
LweI	GCATC	3 cut(s)	513, 835, 931
MaeI	CTAG	6 cut(s)	30, 47, 329, 395, 629, 1105
MalI	GATC	1 cut(s)	801
MboI	GATC	1 cut(s)	799
MboII	GAAGA	6 cut(s)	31, 210, 398, 860, 971, 985
MfeI	CAATTG	1 cut(s)	1010
MhlI	GDGCHC	3 cut(s)	218, 1056, 1062
MluCI	AATT	5 cut(s)	260, 635, 755, 1010, 1042
MlyI	GAGTC	3 cut(s)	221, 464, 781
MmeI	TCCRAC	1 cut(s)	768
MnlI	CCTC	8 cut(s)	34, 79, 112, 241, 401, 482, 885, 1009
MroXI	GAANNNNTTC	1 cut(s)	260
MseI	TTAA	3 cut(s)	729, 954, 980
MspA1I	CMGCKG	3 cut(s)	461, 863, 1070
MspR9I	CCNGG	1 cut(s)	992
MunI	CAATTG	1 cut(s)	1010
Mva1269I	GAATGC	2 cut(s)	778, 937
MvaI	CCWGG	1 cut(s)	992
MwoI	GCNNNNNNNGC	5 cut(s)	838, 845, 860, 941, 1093
NdeII	GATC	1 cut(s)	799
NlaIII	CATG	6 cut(s)	272, 337, 585, 659, 686, 1006
NlaIV	GGNNCC	3 cut(s)	469, 567, 855
NmeAIII	GCCGAG	1 cut(s)	676
NspI	RCATGY	2 cut(s)	659, 686
PciSI	GCTCTTC	1 cut(s)	223
PctI	GAATGC	2 cut(s)	778, 937
PdmI	GAANNNNTTC	1 cut(s)	260
PfeI	GAWTC	2 cut(s)	10, 367
PflMI	CCANNNNNTGG	2 cut(s)	103, 863
PkrI	GCNGC	9 cut(s)	193, 340, 439, 463, 681, 778, 951, 1069, 1072
PleI	GAGTC	3 cut(s)	221, 463, 781
PpsI	GAGTC	3 cut(s)	221, 463, 781
Psp6I	CCWGG	1 cut(s)	990
PspGI	CCWGG	1 cut(s)	990
PspN4I	GGNNCC	3 cut(s)	469, 567, 855
PspPI	GGNCC	3 cut(s)	106, 410, 590
PstNI	CAGNNNCTG	1 cut(s)	464
PvuII	CAGCTG	2 cut(s)	461, 863
RsaI	GTAC	1 cut(s)	1092
RsaNI	GTAC	1 cut(s)	1091
SapI	GCTCTTC	1 cut(s)	223
SaqAI	TTAA	3 cut(s)	729, 954, 980
SatI	GCNGC	9 cut(s)	192, 339, 438, 462, 680, 777, 950, 1068, 1071
Sau3AI	GATC	1 cut(s)	799
Sau96I	GGNCC	3 cut(s)	106, 410, 590
SchI	GAGTC	3 cut(s)	221, 464, 781
ScrFI	CCNGG	1 cut(s)	992
SduI	GDGCHC	3 cut(s)	218, 1056, 1062
SfaNI	GCATC	3 cut(s)	513, 835, 931
SinI	GGWCC	2 cut(s)	106, 410
SmlI	CTYRAG	1 cut(s)	615
SmoI	CTYRAG	1 cut(s)	615
SpeI	ACTAGT	1 cut(s)	29
Sse9I	AATT	5 cut(s)	260, 635, 755, 1010, 1042
SsiI	CCGC	3 cut(s)	373, 872, 1068
SspI	AATATT	1 cut(s)	559
SspMI	CTAG	6 cut(s)	30, 47, 329, 395, 629, 1105
StyD4I	CCNGG	1 cut(s)	990
StyI	CCWWGG	1 cut(s)	542
TaaI	ACNGT	4 cut(s)	53, 482, 511, 701
TaqI	TCGA	3 cut(s)	297, 818, 1076
TasI	AATT	5 cut(s)	260, 635, 755, 1010, 1042
TatI	WGTACW	1 cut(s)	1090
TauI	GCSGC	1 cut(s)	1070
TfiI	GAWTC	2 cut(s)	10, 367
Tru1I	TTAA	3 cut(s)	729, 954, 980
Tru9I	TTAA	3 cut(s)	729, 954, 980
TscAI	CASTG	2 cut(s)	706, 811
TseI	GCWGC	8 cut(s)	191, 338, 437, 461, 679, 776, 949, 1070
TspDTI	ATGAA	2 cut(s)	273, 522
TspRI	CASTG	2 cut(s)	706, 811
Van91I	CCANNNNNTGG	2 cut(s)	103, 863
VneI	GTGCAC	1 cut(s)	1052
VpaK11BI	GGWCC	2 cut(s)	106, 410
XapI	RAATTY	2 cut(s)	260, 635
XbaI	TCTAGA	1 cut(s)	46
XceI	RCATGY	2 cut(s)	659, 686
XmnI	GAANNNNTTC	1 cut(s)	260
XspI	CTAG	6 cut(s)	30, 47, 329, 395, 629, 1105

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.