Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb2

Orthogroup ID

OG0009469

Physical Location & Seq

Genomic Coordinates Reverse (-)

1822413 .. 1827188

Gene Structure 4776 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_2g02210.t2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1110 bp

ATGGAGAGGGAAACAAAGAAGGTTGACACTGCTAGTGGGGGAGAGGTTCTAGACGGTTCGAATATAATGGAGTTGGTTGAGAACAAAGAGATGTTCGGCCATTTTGTGGACCATAAGTTTCAGGAGCTGGATAGAGACAGAGATGGTCAGCTTTCTGTGAAGGAGCTTCAGCCTGCTGTTGCTGATATTGGTGCTGCTCTTGGCTTACCTGCTCAGGGCTCTTCCCCTGACTCTGACCACATCTACTCTGAGGTATTGAACGAATTCACTCATGGAAAACAAGAAAAAGTGAGCAAAGTTGAGTTCAAAGAAGTTCTTTCGGATATTCTACTAGGCATGGCTGCTGGTTTGAAGCGAGACCCTATTGTGATTCTCCGCATTGATGGAGAAGACCTCCTAGAATATATCAATGGACCAACTTATGAAGCAGAAATGGTGGCTACACATTCTCAGATAGAGTCAGCTGGTGGAACCCTCCGAGACTGTATTATCAAAGCTTTTGGAATGCTCACAGTTGAACAAGGGATGCCCCCTTCATCAGATCCTTGGGTTGTACGCAATATTGTGGAACCTGCTCTGCAATCATGTGCTGGCCCTGACTGGAACAAGCCTGTCTCCCAAGAAACATTCCTAGTGGAATTCAAGAAAGTAGCCGAGTATGTGGCTGAACTTCTTAGGGAGCAGCATGTGATTGTAGCCCACAGTGAAAATACCTTTGATGGAAGTGGCATTAGGAGATTATTATCCAACAAGTTTGAACTAGACAAGACATTGAATGCAGCTATTGAGACTGTGCCTAAAGATCGCACTGGGAAATTATCAAAGGAGTATTTGCGTGTTGCGCTGGATGTTGTGGCTCCATCAGCTGGTCTTCCGCCACTTGGTGCAGTTGAGCAGATGGACAAGCTTATTTTGGATGCGTTCAACCTGATGAATGCGGATGATGGAAAGCTGCTTAAAGAAGATGAGTTCAAGAAGATATTGACTGAAATCCTGGGAAGTATCATGTTGCAATTGGAGGGAAATCCAATCTCTGTTTATTCTAATTCAGTCGTGCATGAGCCAATTGCCTCTGCTTCGACACTGTTGCAGACACCGCCATCTTCCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

EF-hand_5 EF-hand_7

Protein Analysis

370

Amino Acids

40.44

Weight (kDa)

4.73

Isoelectric Point (pI)

43.13

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
EF-hand_7	PF13499	39 - 106	8.2e-08	EF-hand domain pair

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009469)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G38810 AT4G38810
fragaria_vesca	FvH4_2g02210 FvH4_2g02210
malus_domestica	MD05G1114400.v1.1 MD10G1116400.v1.1
prunus_persica	Prupe.8G158800_v2.0.a1 Prupe.8G158800_v2.0.a1
pyrus_communis	pycom05g10920 pycom10g10110
rosa_chinensis	RchiOBHm_Chr6g0245891
rosa_laevigata	RLG00000015292
rosa_multiflora	Rmu_sc0005570.1_g000011
rosa_roxburghii	Rroxscaffold_7G00215120
rosa_rugosa	Rorug05G0516400
rosa_samantha	Rh6AG031300 Rh6BG027800 Rh6CG027300 Rh6CG027600 Rh6DG026500 Rh6DG026700
rosa_wichuraiana	Rw6G002630

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	2 cut(s)	217, 580
AccB7I	CCANNNNNTGG	2 cut(s)	106, 866
AciI	CCGC	4 cut(s)	376, 875, 938, 1097
AclWI	GGATC	1 cut(s)	536
AcoI	YGGCCR	1 cut(s)	97
AcsI	RAATTY	2 cut(s)	263, 638
AcuI	CTGAAG	1 cut(s)	152
AdeI	CACNNNGTG	1 cut(s)	884
AfaI	GTAC	1 cut(s)	555
AfiI	CCNNNNNNNGG	4 cut(s)	106, 215, 866, 881
AgsI	TTSAA	9 cut(s)	259, 307, 352, 518, 643, 758, 775, 925, 973
AjnI	CCWGG	1 cut(s)	993
AluBI	AGCT	9 cut(s)	127, 151, 166, 464, 497, 782, 866, 907, 952
AluI	AGCT	9 cut(s)	127, 151, 166, 464, 497, 782, 866, 907, 952
Alw26I	GTCTC	5 cut(s)	129, 351, 474, 619, 782
AlwI	GGATC	1 cut(s)	536
AlwNI	CAGNNNCTG	1 cut(s)	127
AoxI	GGCC	2 cut(s)	97, 592
ApeKI	GCWGC	5 cut(s)	194, 341, 682, 779, 952
ApoI	RAATTY	2 cut(s)	263, 638
Asp700I	GAANNNNTTC	1 cut(s)	263
AspLEI	GCGC	1 cut(s)	844
AspS9I	GGNCC	3 cut(s)	109, 413, 593
AsuII	TTCGAA	1 cut(s)	59
AvaII	GGWCC	2 cut(s)	109, 413
BanII	GRGCYC	1 cut(s)	221
BbsI	GAAGAC	2 cut(s)	396, 863
BbvI	GCAGC	5 cut(s)	181, 328, 694, 791, 939
BccI	CCATC	7 cut(s)	137, 377, 713, 868, 892, 938, 1108
BcgI	CGANNNNNNTGC	2 cut(s)	1069, 1103
BciT130I	CCWGG	1 cut(s)	995
BcoDI	GTCTC	5 cut(s)	129, 351, 474, 619, 782
BfaI	CTAG	7 cut(s)	33, 50, 332, 398, 632, 761, 1108
BfuAI	ACCTGC	2 cut(s)	217, 580
BisI	GCNGC	5 cut(s)	195, 342, 683, 780, 953
BlsI	GCNGC	5 cut(s)	196, 343, 684, 781, 954
Bme1390I	CCNGG	1 cut(s)	995
Bme18I	GGWCC	2 cut(s)	109, 413
BmgT120I	GGNCC	3 cut(s)	109, 413, 593
BmiI	GGNNCC	3 cut(s)	472, 570, 858
BmrFI	CCNGG	1 cut(s)	995
BmrI	ACTGGG	1 cut(s)	819
BmsI	GCATC	2 cut(s)	516, 907
BmuI	ACTGGG	1 cut(s)	819
BpiI	GAAGAC	2 cut(s)	396, 863
BplI	GAGNNNNNCTC	2 cut(s)	378, 410
Bpu10I	CCTNAGC	1 cut(s)	213
Bpu14I	TTCGAA	1 cut(s)	59
BsaBI	GATNNNNATC	1 cut(s)	742
BsaI	GGTCTC	1 cut(s)	351
BsaJI	CCNNGG	2 cut(s)	545, 994
Bsc4I	CCNNNNNNNGG	4 cut(s)	106, 215, 866, 881
Bse1I	ACTGG	2 cut(s)	605, 814
Bse8I	GATNNNNATC	1 cut(s)	742
BseBI	CCWGG	1 cut(s)	995
BseDI	CCNNGG	2 cut(s)	545, 994
BseGI	GGATG	4 cut(s)	531, 853, 922, 946
BseJI	GATNNNNATC	1 cut(s)	742
BseLI	CCNNNNNNNGG	4 cut(s)	106, 215, 866, 881
BseMII	CTCAG	3 cut(s)	227, 240, 464
BseNI	ACTGG	2 cut(s)	605, 814
BseXI	GCAGC	5 cut(s)	181, 328, 694, 791, 939
BsgI	GTGCAG	1 cut(s)	906
BshFI	GGCC	2 cut(s)	99, 594
BslI	CCNNNNNNNGG	4 cut(s)	106, 215, 866, 881
BsmAI	GTCTC	5 cut(s)	129, 351, 474, 619, 782
BsmI	GAATGC	3 cut(s)	510, 781, 940
BsnI	GGCC	2 cut(s)	99, 594
Bso31I	GGTCTC	1 cut(s)	351
Bsp119I	TTCGAA	1 cut(s)	59
Bsp1286I	GDGCHC	1 cut(s)	221
Bsp143I	GATC	2 cut(s)	541, 802
BspACI	CCGC	4 cut(s)	376, 875, 938, 1097
BspANI	GGCC	2 cut(s)	99, 594
BspCNI	CTCAG	3 cut(s)	226, 241, 463
BspLI	GGNNCC	3 cut(s)	472, 570, 858
BspMI	ACCTGC	2 cut(s)	217, 580
BspPI	GGATC	1 cut(s)	536
BspQI	GCTCTTC	1 cut(s)	226
BspT104I	TTCGAA	1 cut(s)	59
BspTNI	GGTCTC	1 cut(s)	351
BsrI	ACTGG	2 cut(s)	605, 814
BssECI	CCNNGG	2 cut(s)	545, 994
BssMI	GATC	2 cut(s)	541, 802
BssT1I	CCWWGG	1 cut(s)	545
Bst2UI	CCWGG	1 cut(s)	995
Bst4CI	ACNGT	6 cut(s)	56, 485, 514, 704, 793, 1086
Bst6I	CTCTTC	1 cut(s)	226
BstBI	TTCGAA	1 cut(s)	59
BstC8I	GCNNGC	2 cut(s)	174, 592
BstDEI	CTNAG	4 cut(s)	213, 249, 450, 674
BstF5I	GGATG	4 cut(s)	531, 853, 922, 946
BstHHI	GCGC	1 cut(s)	844
BstKTI	GATC	2 cut(s)	544, 805
BstMAI	GTCTC	5 cut(s)	129, 351, 474, 619, 782
BstMBI	GATC	2 cut(s)	541, 802
BstMWI	GCNNNNNNNGC	3 cut(s)	841, 863, 1096
BstNI	CCWGG	1 cut(s)	995
BstNSI	RCATGY	1 cut(s)	689
BstSCI	CCNGG	1 cut(s)	993
BstV1I	GCAGC	5 cut(s)	181, 328, 694, 791, 939
BstV2I	GAAGAC	2 cut(s)	396, 863
BstX2I	RGATCY	1 cut(s)	541
BstYI	RGATCY	1 cut(s)	541
BsuRI	GGCC	2 cut(s)	99, 594
BtsCI	GGATG	4 cut(s)	531, 853, 922, 946
BtsI	GCAGTG	1 cut(s)	27
BtsIMutI	CAGTG	4 cut(s)	27, 709, 807, 1082
BveI	ACCTGC	2 cut(s)	217, 580
Cac8I	GCNNGC	2 cut(s)	174, 592
CaiI	CAGNNNCTG	1 cut(s)	127
CfoI	GCGC	1 cut(s)	844
Cfr13I	GGNCC	3 cut(s)	109, 413, 593
Csp6I	GTAC	1 cut(s)	554
CviAII	CATG	6 cut(s)	272, 337, 585, 686, 1006, 1058
CviQI	GTAC	1 cut(s)	554
DdeI	CTNAG	4 cut(s)	213, 249, 450, 674
DpnI	GATC	2 cut(s)	543, 804
DpnII	GATC	2 cut(s)	541, 802
DraIII	CACNNNGTG	1 cut(s)	884
EaeI	YGGCCR	1 cut(s)	97
Eam1104I	CTCTTC	1 cut(s)	226
EarI	CTCTTC	1 cut(s)	226
EciI	GGCGGA	1 cut(s)	864
Eco130I	CCWWGG	1 cut(s)	545
Eco24I	GRGCYC	1 cut(s)	221
Eco31I	GGTCTC	1 cut(s)	351
Eco47I	GGWCC	2 cut(s)	109, 413
Eco57I	CTGAAG	1 cut(s)	152
EcoRI	GAATTC	2 cut(s)	263, 638
EcoRII	CCWGG	1 cut(s)	993
EcoT14I	CCWWGG	1 cut(s)	545
EcoT38I	GRGCYC	1 cut(s)	221
ErhI	CCWWGG	1 cut(s)	545
FaeI	CATG	6 cut(s)	275, 340, 588, 689, 1009, 1061
FalI	AAGNNNNNCTT	2 cut(s)	300, 332
FatI	CATG	6 cut(s)	271, 336, 584, 685, 1005, 1057
Fnu4HI	GCNGC	5 cut(s)	195, 342, 683, 780, 953
FokI	GGATG	4 cut(s)	538, 860, 929, 953
FriOI	GRGCYC	1 cut(s)	221
Fsp4HI	GCNGC	5 cut(s)	195, 342, 683, 780, 953
FspBI	CTAG	7 cut(s)	33, 50, 332, 398, 632, 761, 1108
GlaI	GCGC	1 cut(s)	843
GluI	GCNGC	5 cut(s)	195, 342, 683, 780, 953
HaeIII	GGCC	2 cut(s)	99, 594
HhaI	GCGC	1 cut(s)	844
Hin1II	CATG	6 cut(s)	275, 340, 588, 689, 1009, 1061
Hin6I	GCGC	1 cut(s)	842
HinP1I	GCGC	1 cut(s)	842
HincII	GTYRAC	1 cut(s)	25
HindII	GTYRAC	1 cut(s)	25
HindIII	AAGCTT	2 cut(s)	495, 905
HinfI	GANTC	3 cut(s)	230, 370, 458
Hpy166II	GTNNAC	2 cut(s)	25, 109
Hpy188I	TCNGA	6 cut(s)	235, 250, 322, 453, 479, 541
Hpy188III	TCNNGA	4 cut(s)	50, 122, 643, 973
Hpy8I	GTNNAC	2 cut(s)	25, 109
HpyAV	CCTTC	3 cut(s)	13, 154, 543
HpyCH4III	ACNGT	6 cut(s)	56, 485, 514, 704, 793, 1086
HpyCH4V	TGCA	6 cut(s)	580, 779, 887, 1012, 1057, 1090
HpyF10VI	GCNNNNNNNGC	3 cut(s)	841, 863, 1096
HpyF3I	CTNAG	4 cut(s)	213, 249, 450, 674
Hsp92II	CATG	6 cut(s)	275, 340, 588, 689, 1009, 1061
HspAI	GCGC	1 cut(s)	842
Kzo9I	GATC	2 cut(s)	541, 802
LguI	GCTCTTC	1 cut(s)	226
LmnI	GCTCC	4 cut(s)	124, 163, 679, 862
Lsp1109I	GCAGC	5 cut(s)	181, 328, 694, 791, 939
LweI	GCATC	2 cut(s)	516, 907
MaeI	CTAG	7 cut(s)	33, 50, 332, 398, 632, 761, 1108
MalI	GATC	2 cut(s)	543, 804
MboI	GATC	2 cut(s)	541, 802
MboII	GAAGA	6 cut(s)	213, 401, 863, 974, 988, 1095
MfeI	CAATTG	2 cut(s)	1013, 1065
MflI	RGATCY	1 cut(s)	541
MhlI	GDGCHC	1 cut(s)	221
MluCI	AATT	6 cut(s)	263, 638, 815, 1013, 1045, 1065
MlyI	GAGTC	2 cut(s)	224, 467
MmeI	TCCRAC	1 cut(s)	771
MnlI	CCTC	6 cut(s)	37, 244, 404, 485, 1012, 1081
MroXI	GAANNNNTTC	1 cut(s)	263
MseI	TTAA	1 cut(s)	957
MspA1I	CMGCKG	2 cut(s)	464, 866
MspR9I	CCNGG	1 cut(s)	995
MunI	CAATTG	2 cut(s)	1013, 1065
Mva1269I	GAATGC	3 cut(s)	510, 781, 940
MvaI	CCWGG	1 cut(s)	995
MwoI	GCNNNNNNNGC	3 cut(s)	841, 863, 1096
NdeII	GATC	2 cut(s)	541, 802
NlaIII	CATG	6 cut(s)	275, 340, 588, 689, 1009, 1061
NlaIV	GGNNCC	3 cut(s)	472, 570, 858
NmeAIII	GCCGAG	1 cut(s)	679
NspI	RCATGY	1 cut(s)	689
NspV	TTCGAA	1 cut(s)	59
PciSI	GCTCTTC	1 cut(s)	226
PctI	GAATGC	3 cut(s)	510, 781, 940
PdmI	GAANNNNTTC	1 cut(s)	263
PfeI	GAWTC	1 cut(s)	370
PflMI	CCANNNNNTGG	2 cut(s)	106, 866
PkrI	GCNGC	5 cut(s)	196, 343, 684, 781, 954
PleI	GAGTC	2 cut(s)	224, 466
PpsI	GAGTC	2 cut(s)	224, 466
Psp6I	CCWGG	1 cut(s)	993
PspGI	CCWGG	1 cut(s)	993
PspN4I	GGNNCC	3 cut(s)	472, 570, 858
PspPI	GGNCC	3 cut(s)	109, 413, 593
PstNI	CAGNNNCTG	1 cut(s)	127
PsuI	RGATCY	1 cut(s)	541
PvuII	CAGCTG	2 cut(s)	464, 866
RsaI	GTAC	1 cut(s)	555
RsaNI	GTAC	1 cut(s)	554
SapI	GCTCTTC	1 cut(s)	226
SaqAI	TTAA	1 cut(s)	957
SatI	GCNGC	5 cut(s)	195, 342, 683, 780, 953
Sau3AI	GATC	2 cut(s)	541, 802
Sau96I	GGNCC	3 cut(s)	109, 413, 593
SchI	GAGTC	2 cut(s)	224, 467
ScrFI	CCNGG	1 cut(s)	995
SduI	GDGCHC	1 cut(s)	221
SfaNI	GCATC	2 cut(s)	516, 907
SfuI	TTCGAA	1 cut(s)	59
SinI	GGWCC	2 cut(s)	109, 413
Sse9I	AATT	6 cut(s)	263, 638, 815, 1013, 1045, 1065
SsiI	CCGC	4 cut(s)	376, 875, 938, 1097
SspI	AATATT	1 cut(s)	562
SspMI	CTAG	7 cut(s)	33, 50, 332, 398, 632, 761, 1108
StyD4I	CCNGG	1 cut(s)	993
StyI	CCWWGG	1 cut(s)	545
TaaI	ACNGT	6 cut(s)	56, 485, 514, 704, 793, 1086
TaqI	TCGA	2 cut(s)	59, 1079
TasI	AATT	6 cut(s)	263, 638, 815, 1013, 1045, 1065
TfiI	GAWTC	1 cut(s)	370
Tru1I	TTAA	1 cut(s)	957
Tru9I	TTAA	1 cut(s)	957
TscAI	CASTG	4 cut(s)	34, 709, 814, 1089
TseI	GCWGC	5 cut(s)	194, 341, 682, 779, 952
TspDTI	ATGAA	3 cut(s)	438, 525, 947
TspRI	CASTG	4 cut(s)	34, 709, 814, 1089
Van91I	CCANNNNNTGG	2 cut(s)	106, 866
VpaK11BI	GGWCC	2 cut(s)	109, 413
XapI	RAATTY	2 cut(s)	263, 638
XbaI	TCTAGA	1 cut(s)	49
XceI	RCATGY	1 cut(s)	689
XmnI	GAANNNNTTC	1 cut(s)	263
XspI	CTAG	7 cut(s)	33, 50, 332, 398, 632, 761, 1108

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.